Gcaud10235.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud10235.t1
Unique NameGcaud10235.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length150
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1210_length_12620_cov_4.526778contigNODE_1210_length_12620_cov_4.526778:2..451 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMO137CT
Preferred nameMCM9
PFAMsMCM,MCM_OB
Max annot lvl2759|Eukaryota
KEGG koko:K10738
Evalue2.34e-51
EggNOG OGsCOG1241@1|root,KOG0477@2759|Eukaryota
EC3.6.4.12
Descriptionnegative regulation of DNA helicase activity
COG categoryL
BRITEko00000,ko01000,ko03032
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud10235Gcaud10235Gracilaria caudata M_176_S67 malegeneNODE_1210_length_12620_cov_4.526778 2..451 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10235.t1.CDS1Gcaud10235.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1210_length_12620_cov_4.526778 2..451 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10235.t1.exon1Gcaud10235.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1210_length_12620_cov_4.526778 2..451 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10235.t1.stop1Gcaud10235.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1210_length_12620_cov_4.526778 449..451 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10235.t1Gcaud10235.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1210_length_12620_cov_4.526778 2..451 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud10235.t1 ID=Gcaud10235.t1|Name=Gcaud10235.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=150bp
IGTTSAGLTVTAVREPGTGEWMLDAGVLVLADAGVCCIDEFDGIKQHDRG
AIHEAMEQQTLSVAKAGLVCTLDTRATVIAAVNQKGGRISTEIGVSETEN
GDDDRETLPITVGIASPLLSRFDVVLTLLDQRNDDWDRELSGFILIKNN*
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spliced messenger RNA

>Gcaud10235.t1 ID=Gcaud10235.t1|Name=Gcaud10235.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=450bp|location=Sequence derived from alignment at NODE_1210_length_12620_cov_4.526778:2..451+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
attggtactacgtctgcggggctcacagttacagctgtgcgggaaccggg
gactggggaatggatgttggacgcaggggtgctcgtgcttgccgatgctg
gtgtttGTTGTATCGATGAATTTGACGGTATAAAGCAGCATGATCGTGGG
GCTATTCATGAAGCAATGGAGCAGCAAACGCTGTCGGTTGCGAAAGCAGG
TCTGGTCTGTACCCTGGACACGCGAGCTACTGTGATAGCGGCTGTAAACC
AGAAAGGGGGTCGGATAAGCACAGAGATTGGCGTTTCTGAGACAGAGAAT
GGTGATGATGATCGGGAAACACTGCCAATAACAGTGGGGATTGCATCTCC
ACTGCTGAGCCGCTTTGATGTAGTATTAACGCTGTTGGATCAGAGGAATG
ACGACTGGGATAGAGAGCTTTCGGGGTTCATTTTGATCAAGAATAACTGA
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protein sequence of Gcaud10235.t1

>Gcaud10235.t1 ID=Gcaud10235.t1|Name=Gcaud10235.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=150bp
IGTTSAGLTVTAVREPGTGEWMLDAGVLVLADAGVCCIDEFDGIKQHDRG
AIHEAMEQQTLSVAKAGLVCTLDTRATVIAAVNQKGGRISTEIGVSETEN
GDDDRETLPITVGIASPLLSRFDVVLTLLDQRNDDWDRELSGFILIKNN*
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mRNA from alignment at NODE_1210_length_12620_cov_4.526778:2..451+

Legend: CDSpolypeptideexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud10235.t1 ID=Gcaud10235.t1|Name=Gcaud10235.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=450bp|location=Sequence derived from alignment at NODE_1210_length_12620_cov_4.526778:2..451+ (Gracilaria caudata M_176_S67 male)
attggtactacgtctgcggggctcacagttacagctgtgcgggaaccggg
gactggggaatggatgttggacgcaggggtgctcgtgcttgccgatgctg
gtgtttGTTGTATCGATGAATTTGACGGTATAAAGCAGCATGATCGTGGG
GCTATTCATGAAGCAATGGAGCAGCAAACGCTGTCGGTTGCGAAAGCAGG
TCTGGTCTGTACCCTGGACACGCGAGCTACTGTGATAGCGGCTGTAAACC
AGAAAGGGGGTCGGATAAGCACAGAGATTGGCGTTTCTGAGACAGAGAAT
GGTGATGATGATCGGGAAACACTGCCAATAACAGTGGGGATTGCATCTCC
ACTGCTGAGCCGCTTTGATGTAGTATTAACGCTGTTGGATCAGAGGAATG
ACGACTGGGATAGAGAGCTTTCGGGGTTCATTTTGATCAAGAATAACTGA
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Coding sequence (CDS) from alignment at NODE_1210_length_12620_cov_4.526778:2..451+

>Gcaud10235.t1 ID=Gcaud10235.t1|Name=Gcaud10235.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=450bp|location=Sequence derived from alignment at NODE_1210_length_12620_cov_4.526778:2..451+ (Gracilaria caudata M_176_S67 male)
attggtactacgtctgcggggctcacagttacagctgtgcgggaaccggg
gactggggaatggatgttggacgcaggggtgctcgtgcttgccgatgctg
gtgtttGTTGTATCGATGAATTTGACGGTATAAAGCAGCATGATCGTGGG
GCTATTCATGAAGCAATGGAGCAGCAAACGCTGTCGGTTGCGAAAGCAGG
TCTGGTCTGTACCCTGGACACGCGAGCTACTGTGATAGCGGCTGTAAACC
AGAAAGGGGGTCGGATAAGCACAGAGATTGGCGTTTCTGAGACAGAGAAT
GGTGATGATGATCGGGAAACACTGCCAATAACAGTGGGGATTGCATCTCC
ACTGCTGAGCCGCTTTGATGTAGTATTAACGCTGTTGGATCAGAGGAATG
ACGACTGGGATAGAGAGCTTTCGGGGTTCATTTTGATCAAGAATAACTGA
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