Gcaud3649.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3649.t1
Unique Name	Gcaud3649.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	266

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_120_length_47600_cov_4.363763	contig	NODE_120_length_47600_cov_4.363763:41208..42194 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	272134.KB731324_gene988
PFAMs	Methyltransf_21
Max annot lvl	1117\|Cyanobacteria
Evalue	1.09e-23
EggNOG OGs	2B73M@1\|root,3204M@2\|Bacteria,1GIC7@1117\|Cyanobacteria,1HGBG@1150\|Oscillatoriales
Description	Methyltransferase domain
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3649	Gcaud3649	Gracilaria caudata M_176_S67 male	gene	NODE_120_length_47600_cov_4.363763 41208..42194 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3649.t1	Gcaud3649.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_120_length_47600_cov_4.363763 41208..42194 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3649.t1.stop1	Gcaud3649.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_120_length_47600_cov_4.363763 41208..41210 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3649.t1.CDS1	Gcaud3649.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_120_length_47600_cov_4.363763 41208..41213 -
Gcaud3649.t1.CDS2	Gcaud3649.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_120_length_47600_cov_4.363763 41268..41362 -
Gcaud3649.t1.CDS3	Gcaud3649.t1.CDS3	Gracilaria caudata M_176_S67 male	CDS	NODE_120_length_47600_cov_4.363763 41445..41454 -
Gcaud3649.t1.CDS4	Gcaud3649.t1.CDS4	Gracilaria caudata M_176_S67 male	CDS	NODE_120_length_47600_cov_4.363763 41508..42194 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3649.t1.exon1	Gcaud3649.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_120_length_47600_cov_4.363763 41208..41213 -
Gcaud3649.t1.exon2	Gcaud3649.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_120_length_47600_cov_4.363763 41268..41362 -
Gcaud3649.t1.exon3	Gcaud3649.t1.exon3	Gracilaria caudata M_176_S67 male	exon	NODE_120_length_47600_cov_4.363763 41445..41454 -
Gcaud3649.t1.exon4	Gcaud3649.t1.exon4	Gracilaria caudata M_176_S67 male	exon	NODE_120_length_47600_cov_4.363763 41508..42194 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3649.t1.intron1	Gcaud3649.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_120_length_47600_cov_4.363763 41214..41267 -
Gcaud3649.t1.intron2	Gcaud3649.t1.intron2	Gracilaria caudata M_176_S67 male	intron	NODE_120_length_47600_cov_4.363763 41363..41444 -
Gcaud3649.t1.intron3	Gcaud3649.t1.intron3	Gracilaria caudata M_176_S67 male	intron	NODE_120_length_47600_cov_4.363763 41455..41507 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3649.t1.start1	Gcaud3649.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_120_length_47600_cov_4.363763 42192..42194 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_120_length_47600_cov_4.363763:41208..42194-
coding sequence from alignment at NODE_120_length_47600_cov_4.363763:41208..42194-

mRNA sequence

>Gcaud3649.t1 ID=Gcaud3649.t1|Name=Gcaud3649.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=266bp
MSLTVKPPAAKPSRSRLRLLLAVVMLTVLVVLLIALSETGSHQLDEARRL
DCARMMRRGDAYGGWTMCSPLYSLKDKIVYTVGVGRNIKWDEAMMKQFNT
VHHGWDPTPTAHDFFSKRPIPDRFVFHRVGLAAYDGELKLKLPEGNADSY
TVMEQKGVAQEGRVGVYPVLKLQSMMRESGHSHLAVLKIDVEGAEFDVIK
EWRENSADIAADQVLIEFHARYFDNGESMNQVGVHICQEATDCEKGHQSW
CVSGVTETVEVHCKT*

spliced messenger RNA

>Gcaud3649.t1 ID=Gcaud3649.t1|Name=Gcaud3649.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=798bp|location=Sequence derived from alignment at NODE_120_length_47600_cov_4.363763:41208..42194- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGTTGACAGTGAAGCCGCCGGCCGCCAAGCCTTCGCGCAGTCGCCT
TCGTTTGCTGTTGGCCGTCGTCATGCTCACGGTCTTGGTTGTGCTGTTGA
TCGCCCTCTCCGAGACTGGCTCCCACCAGCTTGACGAAGCTAGAAGGCTG
GACTGTGCGCGCATGATGCGAAGGGGAGACGCCTACGGCGGCTGGACCAT
GTGCAGTCCGCTGTATTCTCTCAAGGATAAGATCGTTTACACAGTCGGCG
TTGGACGCAACATAAAATGGGACGAAGCCATGATGAAACAGTTTAACACT
GTTCACCACGGCTGGGACCCTACTCCCACTGCTCATGACTTCTTCTCCAA
GCGTCCTATCCCGGACCGCTTCGTGTTCCACAGGGTCGGTTTGGCCGCGT
ATGACGGCGAACTCAAGCTTAAGTTGCCGGAGGGTAACGCTGACAGCTAT
ACTGTGATGGAACAGAAGGGCGTTGCACAGGAGGGCAGGGTGGGCGTGTA
TCCCGTGCTCAAGTTGCAGAGTATGATGCGTGAGAGCGGTCATTCACATT
TGGCTGTGCTCAAGATTGATGTAGAGGGCGCTGAGTTTGATGTCATCAAG
GAGTGGCGCGAAAATTCGGCCGATATCGCTGCCGATCAAGTGCTCATCGA
GTTCCATGCCAGGTATTTCGATAATGGAGAGAGCATGAACCAAGTTGGAG
TACACATTTGCCAAGAAGCGACTGATTGCGAAAAAGGGCACCAGAGCTGG
TGTGTCTCTGGTGTGACTGAGACCGTAGAAGTGCACTGTAAAACGTAA

protein sequence of Gcaud3649.t1

>Gcaud3649.t1 ID=Gcaud3649.t1|Name=Gcaud3649.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=266bp
MSLTVKPPAAKPSRSRLRLLLAVVMLTVLVVLLIALSETGSHQLDEARRL
DCARMMRRGDAYGGWTMCSPLYSLKDKIVYTVGVGRNIKWDEAMMKQFNT
VHHGWDPTPTAHDFFSKRPIPDRFVFHRVGLAAYDGELKLKLPEGNADSY
TVMEQKGVAQEGRVGVYPVLKLQSMMRESGHSHLAVLKIDVEGAEFDVIK
EWRENSADIAADQVLIEFHARYFDNGESMNQVGVHICQEATDCEKGHQSW
CVSGVTETVEVHCKT*

mRNA from alignment at NODE_120_length_47600_cov_4.363763:41208..42194-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3649.t1 ID=Gcaud3649.t1|Name=Gcaud3649.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=987bp|location=Sequence derived from alignment at NODE_120_length_47600_cov_4.363763:41208..42194- (Gracilaria caudata M_176_S67 male)
ATGTCGTTGACAGTGAAGCCGCCGGCCGCCAAGCCTTCGCGCAGTCGCCT
TCGTTTGCTGTTGGCCGTCGTCATGCTCACGGTCTTGGTTGTGCTGTTGA
TCGCCCTCTCCGAGACTGGCTCCCACCAGCTTGACGAAGCTAGAAGGCTG
GACTGTGCGCGCATGATGCGAAGGGGAGACGCCTACGGCGGCTGGACCAT
GTGCAGTCCGCTGTATTCTCTCAAGGATAAGATCGTTTACACAGTCGGCG
TTGGACGCAACATAAAATGGGACGAAGCCATGATGAAACAGTTTAACACT
GTTCACCACGGCTGGGACCCTACTCCCACTGCTCATGACTTCTTCTCCAA
GCGTCCTATCCCGGACCGCTTCGTGTTCCACAGGGTCGGTTTGGCCGCGT
ATGACGGCGAACTCAAGCTTAAGTTGCCGGAGGGTAACGCTGACAGCTAT
ACTGTGATGGAACAGAAGGGCGTTGCACAGGAGGGCAGGGTGGGCGTGTA
TCCCGTGCTCAAGTTGCAGAGTATGATGCGTGAGAGCGGTCATTCACATT
TGGCTGTGCTCAAGATTGATGTAGAGGGCGCTGAGTTTGATGTCATCAAG
GAGTGGCGCGAAAATTCGGCCGATATCGCTGCCGATCAAGTGCTCATCGA
GTTCCATGCCAGGTATTTCGATAATGGAGAGAGCATGGTTCGTCGTGCCG
TGTCGGATATGGATGAGTTGGGCTTCTTACTGGTTCATAGAACCAAGTTG
GTACGTTCACTTACATTGTGGCTGTTTAAGTTGGTTCCCATCCTCGGCCT
ATTCTAACGCTCACTTTCCTTGTTTATGCTAGGAGTACACATTTGCCAAG
AAGCGACTGATTGCGAAAAAGGGCACCAGAGCTGGTGTGTCTCTGGTGTG
ACTGAGACCGTAGAAGTGCACTGTAAAGTAGGTACAAGACTTAATCTAAC
ATCTCAACGCAAGCTAACTTGACAATTACAGACGTAA

Coding sequence (CDS) from alignment at NODE_120_length_47600_cov_4.363763:41208..42194-

>Gcaud3649.t1 ID=Gcaud3649.t1|Name=Gcaud3649.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=798bp|location=Sequence derived from alignment at NODE_120_length_47600_cov_4.363763:41208..42194- (Gracilaria caudata M_176_S67 male)
ATGTCGTTGACAGTGAAGCCGCCGGCCGCCAAGCCTTCGCGCAGTCGCCT
TCGTTTGCTGTTGGCCGTCGTCATGCTCACGGTCTTGGTTGTGCTGTTGA
TCGCCCTCTCCGAGACTGGCTCCCACCAGCTTGACGAAGCTAGAAGGCTG
GACTGTGCGCGCATGATGCGAAGGGGAGACGCCTACGGCGGCTGGACCAT
GTGCAGTCCGCTGTATTCTCTCAAGGATAAGATCGTTTACACAGTCGGCG
TTGGACGCAACATAAAATGGGACGAAGCCATGATGAAACAGTTTAACACT
GTTCACCACGGCTGGGACCCTACTCCCACTGCTCATGACTTCTTCTCCAA
GCGTCCTATCCCGGACCGCTTCGTGTTCCACAGGGTCGGTTTGGCCGCGT
ATGACGGCGAACTCAAGCTTAAGTTGCCGGAGGGTAACGCTGACAGCTAT
ACTGTGATGGAACAGAAGGGCGTTGCACAGGAGGGCAGGGTGGGCGTGTA
TCCCGTGCTCAAGTTGCAGAGTATGATGCGTGAGAGCGGTCATTCACATT
TGGCTGTGCTCAAGATTGATGTAGAGGGCGCTGAGTTTGATGTCATCAAG
GAGTGGCGCGAAAATTCGGCCGATATCGCTGCCGATCAAGTGCTCATCGA
GTTCCATGCCAGGTATTTCGATAATGGAGAGAGCATGAACCAAGTTGGAG
TACACATTTGCCAAGAAGCGACTGATTGCGAAAAAGGGCACCAGAGCTGG
TGTGTCTCTGGTGTGACTGAGACCGTAGAAGTGCACTGTAAAACGTAA