Gcaud2062.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2062.t1
Unique NameGcaud2062.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length273
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_856_length_16975_cov_4.345238contigNODE_856_length_16975_cov_4.345238:4215..5033 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2062Gcaud2062Gracilaria caudata M_176_S67 malegeneNODE_856_length_16975_cov_4.345238 4215..5033 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2062.t1.start1Gcaud2062.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_856_length_16975_cov_4.345238 4215..4217 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2062.t1.CDS1Gcaud2062.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_856_length_16975_cov_4.345238 4215..5033 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2062.t1.exon1Gcaud2062.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_856_length_16975_cov_4.345238 4215..5033 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2062.t1.stop1Gcaud2062.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_856_length_16975_cov_4.345238 5031..5033 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2062.t1Gcaud2062.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_856_length_16975_cov_4.345238 4215..5033 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2062.t1 ID=Gcaud2062.t1|Name=Gcaud2062.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=273bp
MTPDINLLVLPGSLFCTKVMCALHYLELPFSLTSVPPTKLKKQLPAPHLV
PVMKYNTQLIADSARILHFLHRHHAHPTRPLYPQVSAGAAKHWSSVAELE
QFAHDNLSMLYYYFGGISRHGIQHVTKPFITRVMPKPLVTVLPFVPGVAA
RAGASALRRRVAPLLGADTIASDAAAKSALFASLRKLDACFENEQQRYFF
GTAGPTAADFGVFAALKRLLHPIPEISAQLSGGYPHCLRDAGGLSRLQAF
FDRMDEQFYRGKIDWSSVPLKL*
back to top

spliced messenger RNA

>Gcaud2062.t1 ID=Gcaud2062.t1|Name=Gcaud2062.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=819bp|location=Sequence derived from alignment at NODE_856_length_16975_cov_4.345238:4215..5033+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
aTGACGCCTGATATCAATCTGCTGGTGCTCCCCGGCTCGCTGTTCTGCAC
CAAGGTCATGTGCGCGCTGCACTACCTCGAGCTGCCGTTCTCGCTCACCT
CCGTGCCGCCCACCAAGCTGAAGAAACAGCTGCCCGCGCCTCATCTCGTG
CCCGTCATGAAGTACAACACCCAGCTCATTGCCGACAGCGCGCGCATCCT
CCACTTCCTGCATCGCCATCACGCGCACCCCACGCGTCCGTTATACCCGC
AAGTGTCCGCCGGCGCCGCCAAGCACTGGTCGTCCGTCGCGGAGCTCGAG
CAGTTCGCGCACGACAATCTGTCCATGTTGTACTACTACTTTGGCGGCAT
CTCGCGCCACGGCATTCAGCACGTCACCAAACCGTTCATCACGCGCGTCA
TGCCCAAACCACTGGTCACCGTGTTGCCGTTTGTGCCCGGCGTGGCCGCC
AGAGCGGGTGCAAGCGCGCTGCGTCGACGCGTCGCGCCGTTATTAGGCGC
CGATACCATTGCGAGCGACGCCGCCGCGAAGAGCGCGTTGTTCGCGTCGC
TGCGCAAGTTGGACGCGTGCTTTGAAAATGAGCAGCAGCGCTACTTTTTC
GGCACCGCCGGTCCCACCGCCGCTGACTTTGGCGTGTTTGCGGCGCTCAA
GCGACTGTTGCACCCCATTCCGGAGATCTCTGCGCAATTGAGTGGCGGCT
ATCCCCACTGTTTGCGTGACGCCGGTGGGTTAAGTCGATTGCAGGCGTTT
TTCGATCGCATGGACGAGCAGTTTTATCGCGGCAAGATTGATTGGTCTTC
GGTTCCGCTCAAGTTGTGA
back to top

protein sequence of Gcaud2062.t1

>Gcaud2062.t1 ID=Gcaud2062.t1|Name=Gcaud2062.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=273bp
MTPDINLLVLPGSLFCTKVMCALHYLELPFSLTSVPPTKLKKQLPAPHLV
PVMKYNTQLIADSARILHFLHRHHAHPTRPLYPQVSAGAAKHWSSVAELE
QFAHDNLSMLYYYFGGISRHGIQHVTKPFITRVMPKPLVTVLPFVPGVAA
RAGASALRRRVAPLLGADTIASDAAAKSALFASLRKLDACFENEQQRYFF
GTAGPTAADFGVFAALKRLLHPIPEISAQLSGGYPHCLRDAGGLSRLQAF
FDRMDEQFYRGKIDWSSVPLKL*
back to top

mRNA from alignment at NODE_856_length_16975_cov_4.345238:4215..5033+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2062.t1 ID=Gcaud2062.t1|Name=Gcaud2062.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=819bp|location=Sequence derived from alignment at NODE_856_length_16975_cov_4.345238:4215..5033+ (Gracilaria caudata M_176_S67 male)
aTGACGCCTGATATCAATCTGCTGGTGCTCCCCGGCTCGCTGTTCTGCAC
CAAGGTCATGTGCGCGCTGCACTACCTCGAGCTGCCGTTCTCGCTCACCT
CCGTGCCGCCCACCAAGCTGAAGAAACAGCTGCCCGCGCCTCATCTCGTG
CCCGTCATGAAGTACAACACCCAGCTCATTGCCGACAGCGCGCGCATCCT
CCACTTCCTGCATCGCCATCACGCGCACCCCACGCGTCCGTTATACCCGC
AAGTGTCCGCCGGCGCCGCCAAGCACTGGTCGTCCGTCGCGGAGCTCGAG
CAGTTCGCGCACGACAATCTGTCCATGTTGTACTACTACTTTGGCGGCAT
CTCGCGCCACGGCATTCAGCACGTCACCAAACCGTTCATCACGCGCGTCA
TGCCCAAACCACTGGTCACCGTGTTGCCGTTTGTGCCCGGCGTGGCCGCC
AGAGCGGGTGCAAGCGCGCTGCGTCGACGCGTCGCGCCGTTATTAGGCGC
CGATACCATTGCGAGCGACGCCGCCGCGAAGAGCGCGTTGTTCGCGTCGC
TGCGCAAGTTGGACGCGTGCTTTGAAAATGAGCAGCAGCGCTACTTTTTC
GGCACCGCCGGTCCCACCGCCGCTGACTTTGGCGTGTTTGCGGCGCTCAA
GCGACTGTTGCACCCCATTCCGGAGATCTCTGCGCAATTGAGTGGCGGCT
ATCCCCACTGTTTGCGTGACGCCGGTGGGTTAAGTCGATTGCAGGCGTTT
TTCGATCGCATGGACGAGCAGTTTTATCGCGGCAAGATTGATTGGTCTTC
GGTTCCGCTCAAGTTGTGA
back to top

Coding sequence (CDS) from alignment at NODE_856_length_16975_cov_4.345238:4215..5033+

>Gcaud2062.t1 ID=Gcaud2062.t1|Name=Gcaud2062.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=819bp|location=Sequence derived from alignment at NODE_856_length_16975_cov_4.345238:4215..5033+ (Gracilaria caudata M_176_S67 male)
aTGACGCCTGATATCAATCTGCTGGTGCTCCCCGGCTCGCTGTTCTGCAC
CAAGGTCATGTGCGCGCTGCACTACCTCGAGCTGCCGTTCTCGCTCACCT
CCGTGCCGCCCACCAAGCTGAAGAAACAGCTGCCCGCGCCTCATCTCGTG
CCCGTCATGAAGTACAACACCCAGCTCATTGCCGACAGCGCGCGCATCCT
CCACTTCCTGCATCGCCATCACGCGCACCCCACGCGTCCGTTATACCCGC
AAGTGTCCGCCGGCGCCGCCAAGCACTGGTCGTCCGTCGCGGAGCTCGAG
CAGTTCGCGCACGACAATCTGTCCATGTTGTACTACTACTTTGGCGGCAT
CTCGCGCCACGGCATTCAGCACGTCACCAAACCGTTCATCACGCGCGTCA
TGCCCAAACCACTGGTCACCGTGTTGCCGTTTGTGCCCGGCGTGGCCGCC
AGAGCGGGTGCAAGCGCGCTGCGTCGACGCGTCGCGCCGTTATTAGGCGC
CGATACCATTGCGAGCGACGCCGCCGCGAAGAGCGCGTTGTTCGCGTCGC
TGCGCAAGTTGGACGCGTGCTTTGAAAATGAGCAGCAGCGCTACTTTTTC
GGCACCGCCGGTCCCACCGCCGCTGACTTTGGCGTGTTTGCGGCGCTCAA
GCGACTGTTGCACCCCATTCCGGAGATCTCTGCGCAATTGAGTGGCGGCT
ATCCCCACTGTTTGCGTGACGCCGGTGGGTTAAGTCGATTGCAGGCGTTT
TTCGATCGCATGGACGAGCAGTTTTATCGCGGCAAGATTGATTGGTCTTC
GGTTCCGCTCAAGTTGTGA
back to top