Gcaud2312.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2312.t1
Unique Name	Gcaud2312.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	522

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_845_length_17097_cov_4.330472	contig	NODE_845_length_17097_cov_4.330472:2119..3684 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	13333.ERN16928
PFAMs	Kelch_1,Kelch_4,Kelch_5
Max annot lvl	35493\|Streptophyta
Evalue	2.45e-11
EggNOG OGs	KOG0379@1\|root,KOG0379@2759\|Eukaryota,37QGY@33090\|Viridiplantae,3GBRG@35493\|Streptophyta
Description	acyl-CoA-binding domain-containing protein
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2312	Gcaud2312	Gracilaria caudata M_176_S67 male	gene	NODE_845_length_17097_cov_4.330472 2119..3684 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2312.t1.start1	Gcaud2312.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_845_length_17097_cov_4.330472 2119..2121 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2312.t1.CDS1	Gcaud2312.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_845_length_17097_cov_4.330472 2119..3684 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2312.t1.exon1	Gcaud2312.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_845_length_17097_cov_4.330472 2119..3684 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2312.t1.stop1	Gcaud2312.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_845_length_17097_cov_4.330472 3682..3684 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2312.t1	Gcaud2312.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_845_length_17097_cov_4.330472 2119..3684 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_845_length_17097_cov_4.330472:2119..3684+
coding sequence from alignment at NODE_845_length_17097_cov_4.330472:2119..3684+

mRNA sequence

>Gcaud2312.t1 ID=Gcaud2312.t1|Name=Gcaud2312.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=522bp
MEWLGDFASSKHSPPPRKGHTMTNLLDTPIVLVFAGEDEAGQLLNDMYAL
HVERREWKQISYGPGPKPHPRLLHTAVAISSTLMVVIGGDTWDSSDSIEA
KAAPTTALNDIWVFDYSDKSWMEIKNTGSTELPFLSCSSAVFGRAKGQVP
GVYIFGGYSRDKTNYNVVYRLRISDWKLEVLAHVEKDADGNKKLIDSDGD
DYHLQGDDEYGKRVIPRDRESHGAIWLPGVGMLVVGGDGGVSILGDCWLF
CQHPDDPQSWRWKELRLVPAGNRPGNKLPRLAGHSLLALPTNTLKVMVWG
GILNTGQEVMASNVSYVIDLDKANIAQTIRVSNTGRAPKTGRILHGFVRS
RDMLFAFGGCDSEGNIQIGTQYGRLLPNFKAPNQAASFFGEEAMAMAMRG
THPEKSCVDNKRPAQGEANRESSTGAARTPLTGEVLEVMDMGLLVSITIE
GKPFKGVLVANEEGDDAVMIDVSDDKQKANGQKSKMRDRPSKRPKLDAAA
EALPDSPPKVRPKQTETIHLE*

spliced messenger RNA

>Gcaud2312.t1 ID=Gcaud2312.t1|Name=Gcaud2312.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1566bp|location=Sequence derived from alignment at NODE_845_length_17097_cov_4.330472:2119..3684+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGTGGCTTGGTGATTTTGCTTCAAGCAAGCATTCTCCGCCTCCTCG
AAAAGGTCATACAATGACAAATCTGCTCGACACTCCAATTGTTCTAGTAT
TTGCTGGAGAGGACGAGGCAGGTCAACTCCTTAATGATATGTATGCTCTC
CATGTCGAACGACGCGAATGGAAACAAATTAGTTATGGACCAGGCCCCAA
ACCGCATCCAAGATTGTTGCACACCGCAGTAGCCATATCTTCCACTTTGA
TGGTCGTCATCGGAGGTGATACATGGGATTCTTCTGATTCTATCGAGGCA
AAGGCAGCTCCCACGACCGCGCTGAATGACATATGGGTCTTCGATTATAG
CGATAAGTCATGGATGGAAATCAAAAACACAGGCTCCACAGAACTACCGT
TTCTTAGCTGTTCTTCGGCCGTTTTTGGACGGGCAAAGGGTCAAGTTCCA
GGGGTATACATTTTCGGCGGTTATAGCCGTGACAAAACGAACTACAACGT
AGTGTACCGTTTAAGAATTAGTGATTGGAAGCTGGAAGTTCTTGCACATG
TGGAGAAGGATGCAGACGGAAATAAAAAGTTAATTGACAGTGATGGCGAT
GATTACCACTTGCAAGGAGATGATGAGTATGGTAAACGAGTAATACCGAG
GGATCGAGAGTCACACGGTGCAATATGGCTCCCTGGAGTTGGTATGTTGG
TCGTCGGAGGAGATGGGGGAGTATCAATTCTTGGAGACTGTTGGTTGTTT
TGTCAACATCCAGATGACCCCCAATCTTGGAGATGGAAAGAGTTGCGTCT
TGTCCCCGCCGGGAATCGTCCCGGAAACAAACTCCCTCGGTTGGCGGGAC
ATTCTCTGCTCGCCCTACCAACGAACACGTTGAAAGTGATGGTGTGGGGA
GGAATTCTAAACACGGGGCAAGAGGTTATGGCTTCTAATGTGTCGTATGT
CATTGACCTTGACAAAGCAAACATTGCGCAGACCATTCGAGTCTCAAATA
CTGGGAGGGCGCCAAAGACAGGGAGAATACTACATGGATTTGTACGGTCA
AGGGACATGCTGTTTGCATTTGGCGGCTGTGATTCTGAGGGAAACATACA
GATTGGAACACAATATGGTCGACTGCTGCCCAACTTCAAGGCGCCAAATC
AAGCCGCGAGCTTTTTTGGGGAAGAGGCCATGGCAATGGCAATGCGTGGC
ACACACCCTGAGAAGAGCTGTGTTGATAACAAGAGACCGGCACAAGGCGA
AGCAAACAGAGAGTCATCAACTGGCGCCGCTCGTACTCCTCTAACAGGAG
AGGTGTTGGAAGTTATGGACATGGGACTGCTGGTGTCCATTACAATCGAG
GGAAAGCCATTTAAGGGAGTGCTGGTCGCCAACGAGGAAGGCGATGATGC
TGTGATGATCGACGTTTCTGACGATAAGCAAAAAGCAAACGGACAAAAGA
GCAAGATGAGGGACAGGCCGAGCAAGCGACCTAAACTAGATGCCGCCGCA
GAAGCTCTTCCTGACTCACCGCCTAAGGTGCGACCTAAACAAACGGAAAC
GATTCATCTGGAGTAA

protein sequence of Gcaud2312.t1

>Gcaud2312.t1 ID=Gcaud2312.t1|Name=Gcaud2312.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=522bp
MEWLGDFASSKHSPPPRKGHTMTNLLDTPIVLVFAGEDEAGQLLNDMYAL
HVERREWKQISYGPGPKPHPRLLHTAVAISSTLMVVIGGDTWDSSDSIEA
KAAPTTALNDIWVFDYSDKSWMEIKNTGSTELPFLSCSSAVFGRAKGQVP
GVYIFGGYSRDKTNYNVVYRLRISDWKLEVLAHVEKDADGNKKLIDSDGD
DYHLQGDDEYGKRVIPRDRESHGAIWLPGVGMLVVGGDGGVSILGDCWLF
CQHPDDPQSWRWKELRLVPAGNRPGNKLPRLAGHSLLALPTNTLKVMVWG
GILNTGQEVMASNVSYVIDLDKANIAQTIRVSNTGRAPKTGRILHGFVRS
RDMLFAFGGCDSEGNIQIGTQYGRLLPNFKAPNQAASFFGEEAMAMAMRG
THPEKSCVDNKRPAQGEANRESSTGAARTPLTGEVLEVMDMGLLVSITIE
GKPFKGVLVANEEGDDAVMIDVSDDKQKANGQKSKMRDRPSKRPKLDAAA
EALPDSPPKVRPKQTETIHLE*

mRNA from alignment at NODE_845_length_17097_cov_4.330472:2119..3684+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2312.t1 ID=Gcaud2312.t1|Name=Gcaud2312.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1566bp|location=Sequence derived from alignment at NODE_845_length_17097_cov_4.330472:2119..3684+ (Gracilaria caudata M_176_S67 male)
ATGGAGTGGCTTGGTGATTTTGCTTCAAGCAAGCATTCTCCGCCTCCTCG
AAAAGGTCATACAATGACAAATCTGCTCGACACTCCAATTGTTCTAGTAT
TTGCTGGAGAGGACGAGGCAGGTCAACTCCTTAATGATATGTATGCTCTC
CATGTCGAACGACGCGAATGGAAACAAATTAGTTATGGACCAGGCCCCAA
ACCGCATCCAAGATTGTTGCACACCGCAGTAGCCATATCTTCCACTTTGA
TGGTCGTCATCGGAGGTGATACATGGGATTCTTCTGATTCTATCGAGGCA
AAGGCAGCTCCCACGACCGCGCTGAATGACATATGGGTCTTCGATTATAG
CGATAAGTCATGGATGGAAATCAAAAACACAGGCTCCACAGAACTACCGT
TTCTTAGCTGTTCTTCGGCCGTTTTTGGACGGGCAAAGGGTCAAGTTCCA
GGGGTATACATTTTCGGCGGTTATAGCCGTGACAAAACGAACTACAACGT
AGTGTACCGTTTAAGAATTAGTGATTGGAAGCTGGAAGTTCTTGCACATG
TGGAGAAGGATGCAGACGGAAATAAAAAGTTAATTGACAGTGATGGCGAT
GATTACCACTTGCAAGGAGATGATGAGTATGGTAAACGAGTAATACCGAG
GGATCGAGAGTCACACGGTGCAATATGGCTCCCTGGAGTTGGTATGTTGG
TCGTCGGAGGAGATGGGGGAGTATCAATTCTTGGAGACTGTTGGTTGTTT
TGTCAACATCCAGATGACCCCCAATCTTGGAGATGGAAAGAGTTGCGTCT
TGTCCCCGCCGGGAATCGTCCCGGAAACAAACTCCCTCGGTTGGCGGGAC
ATTCTCTGCTCGCCCTACCAACGAACACGTTGAAAGTGATGGTGTGGGGA
GGAATTCTAAACACGGGGCAAGAGGTTATGGCTTCTAATGTGTCGTATGT
CATTGACCTTGACAAAGCAAACATTGCGCAGACCATTCGAGTCTCAAATA
CTGGGAGGGCGCCAAAGACAGGGAGAATACTACATGGATTTGTACGGTCA
AGGGACATGCTGTTTGCATTTGGCGGCTGTGATTCTGAGGGAAACATACA
GATTGGAACACAATATGGTCGACTGCTGCCCAACTTCAAGGCGCCAAATC
AAGCCGCGAGCTTTTTTGGGGAAGAGGCCATGGCAATGGCAATGCGTGGC
ACACACCCTGAGAAGAGCTGTGTTGATAACAAGAGACCGGCACAAGGCGA
AGCAAACAGAGAGTCATCAACTGGCGCCGCTCGTACTCCTCTAACAGGAG
AGGTGTTGGAAGTTATGGACATGGGACTGCTGGTGTCCATTACAATCGAG
GGAAAGCCATTTAAGGGAGTGCTGGTCGCCAACGAGGAAGGCGATGATGC
TGTGATGATCGACGTTTCTGACGATAAGCAAAAAGCAAACGGACAAAAGA
GCAAGATGAGGGACAGGCCGAGCAAGCGACCTAAACTAGATGCCGCCGCA
GAAGCTCTTCCTGACTCACCGCCTAAGGTGCGACCTAAACAAACGGAAAC
GATTCATCTGGAGTAA

Coding sequence (CDS) from alignment at NODE_845_length_17097_cov_4.330472:2119..3684+

>Gcaud2312.t1 ID=Gcaud2312.t1|Name=Gcaud2312.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1566bp|location=Sequence derived from alignment at NODE_845_length_17097_cov_4.330472:2119..3684+ (Gracilaria caudata M_176_S67 male)
ATGGAGTGGCTTGGTGATTTTGCTTCAAGCAAGCATTCTCCGCCTCCTCG
AAAAGGTCATACAATGACAAATCTGCTCGACACTCCAATTGTTCTAGTAT
TTGCTGGAGAGGACGAGGCAGGTCAACTCCTTAATGATATGTATGCTCTC
CATGTCGAACGACGCGAATGGAAACAAATTAGTTATGGACCAGGCCCCAA
ACCGCATCCAAGATTGTTGCACACCGCAGTAGCCATATCTTCCACTTTGA
TGGTCGTCATCGGAGGTGATACATGGGATTCTTCTGATTCTATCGAGGCA
AAGGCAGCTCCCACGACCGCGCTGAATGACATATGGGTCTTCGATTATAG
CGATAAGTCATGGATGGAAATCAAAAACACAGGCTCCACAGAACTACCGT
TTCTTAGCTGTTCTTCGGCCGTTTTTGGACGGGCAAAGGGTCAAGTTCCA
GGGGTATACATTTTCGGCGGTTATAGCCGTGACAAAACGAACTACAACGT
AGTGTACCGTTTAAGAATTAGTGATTGGAAGCTGGAAGTTCTTGCACATG
TGGAGAAGGATGCAGACGGAAATAAAAAGTTAATTGACAGTGATGGCGAT
GATTACCACTTGCAAGGAGATGATGAGTATGGTAAACGAGTAATACCGAG
GGATCGAGAGTCACACGGTGCAATATGGCTCCCTGGAGTTGGTATGTTGG
TCGTCGGAGGAGATGGGGGAGTATCAATTCTTGGAGACTGTTGGTTGTTT
TGTCAACATCCAGATGACCCCCAATCTTGGAGATGGAAAGAGTTGCGTCT
TGTCCCCGCCGGGAATCGTCCCGGAAACAAACTCCCTCGGTTGGCGGGAC
ATTCTCTGCTCGCCCTACCAACGAACACGTTGAAAGTGATGGTGTGGGGA
GGAATTCTAAACACGGGGCAAGAGGTTATGGCTTCTAATGTGTCGTATGT
CATTGACCTTGACAAAGCAAACATTGCGCAGACCATTCGAGTCTCAAATA
CTGGGAGGGCGCCAAAGACAGGGAGAATACTACATGGATTTGTACGGTCA
AGGGACATGCTGTTTGCATTTGGCGGCTGTGATTCTGAGGGAAACATACA
GATTGGAACACAATATGGTCGACTGCTGCCCAACTTCAAGGCGCCAAATC
AAGCCGCGAGCTTTTTTGGGGAAGAGGCCATGGCAATGGCAATGCGTGGC
ACACACCCTGAGAAGAGCTGTGTTGATAACAAGAGACCGGCACAAGGCGA
AGCAAACAGAGAGTCATCAACTGGCGCCGCTCGTACTCCTCTAACAGGAG
AGGTGTTGGAAGTTATGGACATGGGACTGCTGGTGTCCATTACAATCGAG
GGAAAGCCATTTAAGGGAGTGCTGGTCGCCAACGAGGAAGGCGATGATGC
TGTGATGATCGACGTTTCTGACGATAAGCAAAAAGCAAACGGACAAAAGA
GCAAGATGAGGGACAGGCCGAGCAAGCGACCTAAACTAGATGCCGCCGCA
GAAGCTCTTCCTGACTCACCGCCTAAGGTGCGACCTAAACAAACGGAAAC
GATTCATCTGGAGTAA