Gcaud1768.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1768.t1
Unique Name	Gcaud1768.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	396

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_837_length_17206_cov_4.413380	contig	NODE_837_length_17206_cov_4.413380:3099..4397 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2903.EOD07558
PFAMs	CpeT
Max annot lvl	2759\|Eukaryota
Evalue	3.14e-38
EggNOG OGs	2CBDP@1\|root,2SAUK@2759\|Eukaryota
Description	CpeT/CpcT family (DUF1001)
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1768	Gcaud1768	Gracilaria caudata M_176_S67 male	gene	NODE_837_length_17206_cov_4.413380 3099..4397 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1768.t1	Gcaud1768.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_837_length_17206_cov_4.413380 3099..4397 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1768.t1.start1	Gcaud1768.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_837_length_17206_cov_4.413380 3099..3101 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1768.t1.CDS1	Gcaud1768.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_837_length_17206_cov_4.413380 3099..4268 +
Gcaud1768.t1.CDS2	Gcaud1768.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_837_length_17206_cov_4.413380 4380..4397 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1768.t1.exon1	Gcaud1768.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_837_length_17206_cov_4.413380 3099..4268 +
Gcaud1768.t1.exon2	Gcaud1768.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_837_length_17206_cov_4.413380 4380..4397 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1768.t1.intron1	Gcaud1768.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_837_length_17206_cov_4.413380 4269..4379 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1768.t1.stop1	Gcaud1768.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_837_length_17206_cov_4.413380 4395..4397 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_837_length_17206_cov_4.413380:3099..4397+
coding sequence from alignment at NODE_837_length_17206_cov_4.413380:3099..4397+

mRNA sequence

>Gcaud1768.t1 ID=Gcaud1768.t1|Name=Gcaud1768.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=396bp
MSNLVVPPAFNVNTAFPHSQRRHQRGSHRCAIRHKRLRSYACATAANESL
SSGSPPPPQEFTRYGVLTDSVLEIKWRCEQRTPVASAAASTLPPFPTDEL
VCYLDETDLSASDPYKSFARFTRIAAPTATLGMSTAPRDVSYSSAAIVQR
LFQYAHSKDNLQRFLKWFTGEFDNYEQIYQERLQGIFPREGGGHEHIHCS
ITQIAPDLLYAKYYFNGNPQFVFRSRLYQVRARDDSERGVIEMRIFRFYE
ETERSLKAANYDIDAVQWDTNDVYDWMQGCEVFWERYVPPSDQRDEACEA
LGIEGGARFVGYMKGGGCEVYSREIGTRIKVMDDLLLTSEDLWVADRGFD
LDDEFIYGNRLGIPYKMRRVRPGSDCEWTVSKQYSPPDDYDRVCQ*

spliced messenger RNA

>Gcaud1768.t1 ID=Gcaud1768.t1|Name=Gcaud1768.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1188bp|location=Sequence derived from alignment at NODE_837_length_17206_cov_4.413380:3099..4397+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCAATCTGGTCGTTCCTCCTGCCTTCAACGTGAACACTGCGTTCCC
ACATTCACAGCGCCGTCATCAGCGCGGCTCACATCGCTGTGCGATTCGCC
ACAAACGGCTGCGTTCGTACGCATGTGCTACTGCCGCGAACGAGTCTTTG
TCGAGCGGAAGCCCTCCTCCACCACAAGAGTTTACTCGATATGGCGTTCT
TACCGACTCTGTTTTGGAGATTAAGTGGAGATGTGAACAGCGCACGCCCG
TTGCTTCTGCGGCTGCGTCCACGCTGCCTCCTTTTCCAACAGATGAACTG
GTGTGTTATTTGGATGAAACAGATCTTTCGGCGAGTGATCCATATAAATC
ATTTGCCAGATTTACCAGGATTGCAGCACCTACAGCCACGTTGGGAATGT
CTACTGCCCCACGTGATGTGTCATATTCTTCAGCTGCCATAGTGCAACGC
TTATTTCAATACGCGCATTCGAAGGATAACCTGCAACGTTTCTTAAAGTG
GTTCACTGGCGAGTTTGATAATTACGAACAAATATATCAAGAACGATTGC
AGGGCATATTCCCCAGAGAGGGTGGTGGTCATGAACATATACATTGCTCC
ATCACCCAAATCGCTCCAGATTTATTGTATGCAAAGTACTACTTCAATGG
AAATCCTCAGTTTGTATTTCGTTCACGTTTGTATCAAGTTCGAGCGAGAG
ATGATTCTGAAAGAGGTGTGATTGAAATGAGAATCTTTCGCTTCTATGAA
GAAACTGAACGCTCGTTGAAGGCTGCAAATTATGACATTGATGCTGTGCA
GTGGGATACAAACGATGTGTACGATTGGATGCAAGGCTGCGAAGTGTTTT
GGGAACGGTATGTTCCACCGAGTGATCAGCGTGACGAGGCTTGTGAGGCA
TTGGGTATTGAAGGTGGTGCTCGCTTTGTTGGGTACATGAAGGGCGGTGG
TTGTGAGGTTTATTCCAGAGAGATTGGTACACGGATAAAAGTTATGGATG
ACCTGTTGTTGACAAGTGAAGACTTGTGGGTGGCCGATCGCGGATTTGAT
CTTGATGATGAGTTCATCTATGGTAACCGACTTGGTATACCTTATAAAAT
GAGACGAGTGAGACCAGGAAGTGACTGTGAATGGACTGTTTCAAAACAGT
ATTCACCGCCTGACGATTATGATCGTGTATGCCAATAA

protein sequence of Gcaud1768.t1

>Gcaud1768.t1 ID=Gcaud1768.t1|Name=Gcaud1768.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=396bp
MSNLVVPPAFNVNTAFPHSQRRHQRGSHRCAIRHKRLRSYACATAANESL
SSGSPPPPQEFTRYGVLTDSVLEIKWRCEQRTPVASAAASTLPPFPTDEL
VCYLDETDLSASDPYKSFARFTRIAAPTATLGMSTAPRDVSYSSAAIVQR
LFQYAHSKDNLQRFLKWFTGEFDNYEQIYQERLQGIFPREGGGHEHIHCS
ITQIAPDLLYAKYYFNGNPQFVFRSRLYQVRARDDSERGVIEMRIFRFYE
ETERSLKAANYDIDAVQWDTNDVYDWMQGCEVFWERYVPPSDQRDEACEA
LGIEGGARFVGYMKGGGCEVYSREIGTRIKVMDDLLLTSEDLWVADRGFD
LDDEFIYGNRLGIPYKMRRVRPGSDCEWTVSKQYSPPDDYDRVCQ*

mRNA from alignment at NODE_837_length_17206_cov_4.413380:3099..4397+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1768.t1 ID=Gcaud1768.t1|Name=Gcaud1768.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1299bp|location=Sequence derived from alignment at NODE_837_length_17206_cov_4.413380:3099..4397+ (Gracilaria caudata M_176_S67 male)
ATGAGCAATCTGGTCGTTCCTCCTGCCTTCAACGTGAACACTGCGTTCCC
ACATTCACAGCGCCGTCATCAGCGCGGCTCACATCGCTGTGCGATTCGCC
ACAAACGGCTGCGTTCGTACGCATGTGCTACTGCCGCGAACGAGTCTTTG
TCGAGCGGAAGCCCTCCTCCACCACAAGAGTTTACTCGATATGGCGTTCT
TACCGACTCTGTTTTGGAGATTAAGTGGAGATGTGAACAGCGCACGCCCG
TTGCTTCTGCGGCTGCGTCCACGCTGCCTCCTTTTCCAACAGATGAACTG
GTGTGTTATTTGGATGAAACAGATCTTTCGGCGAGTGATCCATATAAATC
ATTTGCCAGATTTACCAGGATTGCAGCACCTACAGCCACGTTGGGAATGT
CTACTGCCCCACGTGATGTGTCATATTCTTCAGCTGCCATAGTGCAACGC
TTATTTCAATACGCGCATTCGAAGGATAACCTGCAACGTTTCTTAAAGTG
GTTCACTGGCGAGTTTGATAATTACGAACAAATATATCAAGAACGATTGC
AGGGCATATTCCCCAGAGAGGGTGGTGGTCATGAACATATACATTGCTCC
ATCACCCAAATCGCTCCAGATTTATTGTATGCAAAGTACTACTTCAATGG
AAATCCTCAGTTTGTATTTCGTTCACGTTTGTATCAAGTTCGAGCGAGAG
ATGATTCTGAAAGAGGTGTGATTGAAATGAGAATCTTTCGCTTCTATGAA
GAAACTGAACGCTCGTTGAAGGCTGCAAATTATGACATTGATGCTGTGCA
GTGGGATACAAACGATGTGTACGATTGGATGCAAGGCTGCGAAGTGTTTT
GGGAACGGTATGTTCCACCGAGTGATCAGCGTGACGAGGCTTGTGAGGCA
TTGGGTATTGAAGGTGGTGCTCGCTTTGTTGGGTACATGAAGGGCGGTGG
TTGTGAGGTTTATTCCAGAGAGATTGGTACACGGATAAAAGTTATGGATG
ACCTGTTGTTGACAAGTGAAGACTTGTGGGTGGCCGATCGCGGATTTGAT
CTTGATGATGAGTTCATCTATGGTAACCGACTTGGTATACCTTATAAAAT
GAGACGAGTGAGACCAGGAAGTGACTGTGAATGGACTGTTTCAAAACAGT
ATTCACCGCCTGACGATTATGTAAGTTAAAAGTGAGTTAATGCGACTAGA
AATTCATTGCAATCAAGGTTTCGGCCAGTTGAAATACGGCCACTTTTGCG
CGACCAAAAGACTGACCCTCACTATAAACAGGATCGTGTATGCCAATAA

Coding sequence (CDS) from alignment at NODE_837_length_17206_cov_4.413380:3099..4397+

>Gcaud1768.t1 ID=Gcaud1768.t1|Name=Gcaud1768.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1188bp|location=Sequence derived from alignment at NODE_837_length_17206_cov_4.413380:3099..4397+ (Gracilaria caudata M_176_S67 male)
ATGAGCAATCTGGTCGTTCCTCCTGCCTTCAACGTGAACACTGCGTTCCC
ACATTCACAGCGCCGTCATCAGCGCGGCTCACATCGCTGTGCGATTCGCC
ACAAACGGCTGCGTTCGTACGCATGTGCTACTGCCGCGAACGAGTCTTTG
TCGAGCGGAAGCCCTCCTCCACCACAAGAGTTTACTCGATATGGCGTTCT
TACCGACTCTGTTTTGGAGATTAAGTGGAGATGTGAACAGCGCACGCCCG
TTGCTTCTGCGGCTGCGTCCACGCTGCCTCCTTTTCCAACAGATGAACTG
GTGTGTTATTTGGATGAAACAGATCTTTCGGCGAGTGATCCATATAAATC
ATTTGCCAGATTTACCAGGATTGCAGCACCTACAGCCACGTTGGGAATGT
CTACTGCCCCACGTGATGTGTCATATTCTTCAGCTGCCATAGTGCAACGC
TTATTTCAATACGCGCATTCGAAGGATAACCTGCAACGTTTCTTAAAGTG
GTTCACTGGCGAGTTTGATAATTACGAACAAATATATCAAGAACGATTGC
AGGGCATATTCCCCAGAGAGGGTGGTGGTCATGAACATATACATTGCTCC
ATCACCCAAATCGCTCCAGATTTATTGTATGCAAAGTACTACTTCAATGG
AAATCCTCAGTTTGTATTTCGTTCACGTTTGTATCAAGTTCGAGCGAGAG
ATGATTCTGAAAGAGGTGTGATTGAAATGAGAATCTTTCGCTTCTATGAA
GAAACTGAACGCTCGTTGAAGGCTGCAAATTATGACATTGATGCTGTGCA
GTGGGATACAAACGATGTGTACGATTGGATGCAAGGCTGCGAAGTGTTTT
GGGAACGGTATGTTCCACCGAGTGATCAGCGTGACGAGGCTTGTGAGGCA
TTGGGTATTGAAGGTGGTGCTCGCTTTGTTGGGTACATGAAGGGCGGTGG
TTGTGAGGTTTATTCCAGAGAGATTGGTACACGGATAAAAGTTATGGATG
ACCTGTTGTTGACAAGTGAAGACTTGTGGGTGGCCGATCGCGGATTTGAT
CTTGATGATGAGTTCATCTATGGTAACCGACTTGGTATACCTTATAAAAT
GAGACGAGTGAGACCAGGAAGTGACTGTGAATGGACTGTTTCAAAACAGT
ATTCACCGCCTGACGATTATGATCGTGTATGCCAATAA