Gcaud7776.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud7776.t1
Unique NameGcaud7776.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length598
Homology
BLAST of Gcaud7776.t1 vs. uniprot
Match: A0A2V3IJ31_9FLOR (Pentatricopeptide repeat-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IJ31_9FLOR)

HSP 1 Score: 273 bits (699), Expect = 9.270e-80
Identity = 282/425 (66.35%), Postives = 321/425 (75.53%), Query Frame = 0
Query:    6 AQLVQREIATVSYGALLNAVEACVQSRRYVLCVSLIEAALTQPRLVQRFSAKMYSHLFMSLMRIGTKAAALRALELLTQTAAVAADADAELAHLLGPRAYNFVFVALSRVALIDEAREVARMCYQVGYYLNRYSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQMERESQPAGASIVHNGLGVAPDLVTYNTLLSALASFDRPQFDRALRVKRHMERRGIQCNEVSYNALMATAAKSDRVKEAFSIYEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGGMSGSSERALNMLETMRSSDTCEPDVITYSTVIDVLGRNERFEDMNRVFSEMKRDG 430
            A L   + A  +Y  LL AVE+CV SRRY   V LI+AA   P L  RF+A++YS  F+SLM++GT++ A RA   L            +++ +LGPRA+NFVFVALSRVA+IDEA++VARMCY  GYYLNRYS                                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   AQMERES+    SIV NGLGVAPDLVTYNTLLSALA+ D+P F+RA+RVK HME+RG+ CNEVSYNALMATAAKSDRV EAF IY  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRG   G+ +RAL++L+ MR++  C PDVITYST+IDVLGRNERF++M R+F EM+ DG
Sbjct:   74 ADLSDADAARTTYPNLLRAVESCVNSRRYAAAVRLIDAAAAHPPLYARFTARIYSFFFLSLMKLGTRSHAARAFSSLDHIVR-----HMDVSTMLGPRAFNFVFVALSRVAMIDEAQQVARMCYHAGYYLNRYSYNALLNACAKEQRLDVALATLREMAEHNVSPDVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELVAQMERESRSTEGSIVENGLGVAPDLVTYNTLLSALAALDKPNFERAIRVKNHMEQRGLNCNEVSYNALMATAAKSDRVAEAFEIYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGCEDGNIDRALDLLQIMRNTPRCAPDVITYSTIIDVLGRNERFDEMKRLFKEMQEDG 493          
BLAST of Gcaud7776.t1 vs. uniprot
Match: R7Q6H8_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q6H8_CHOCR)

HSP 1 Score: 125 bits (314), Expect = 1.990e-26
Identity = 243/537 (45.25%), Postives = 287/537 (53.45%), Query Frame = 0
Query:    7 QLVQREIATVSYGALLNAVEACVQSRRYVLCVSLIEAALTQPRLVQRFSAKMYSHLFMSLMRIGTKAAALRALELLTQTAAVAADADAELAHLLGPRAYNFVFVALSRVALIDEAREVARMCYQVGYYLNRYSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQMERES---------------------------------QPAGA-------------------------SIVHNG------------------------------------------------------LGVAPDLVTYNTLLSALASFDRPQFDRALRVKRHMERRGIQCNEVSYNALMATAAKSDRVKEAFSIYEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGGMS-GSSERALNMLETMRSSDTCEPDVITYSTVIDVLGRNERFEDMNRVFSEMKRDG 430
            +LV R++ T+SYGA+L  + A  ++  +   V + +AA     +  RF++++Y+ LF SLM++G    A RA E       V  D D  L   LGPRAYNF+FV LSR A +DEA  V   C + G+YLNRYS       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                   A ME E+                                 +PA                           ++ H G                                                       GV+PDLVTYNTL+S LA  + P F+RA+RVK+HME R + CNEVSYNALMA AA+S+RV+ AF IY+E               XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR      + E AL + + MR +  C PDVITYSTVID LGR  RF  +  V  EM R+G
Sbjct:   75 ELVARDVDTLSYGAILRVLSALTKAALWRPAVRVYDAAALNHGIKIRFTSRIYTDLFFSLMKLGGPRDADRAFE--EWQYLVDRDRDQTL---LGPRAYNFLFVLLSRNARVDEAMSVRNNCSENGFYLNRYSYNAFLNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSIVNGLRKNKMLEEAFQLVALMETEAANGKSIPLITDIPKCVEEPETGHARRQSPEAVDKPAHVVAAAPLIEALTTARRATTAKPGETLTVEHKGKKQGGETREEKGNPAAEQGKNEADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETGVSPDLVTYNTLISGLACEEFPDFERAMRVKQHMESRRVICNEVSYNALMAVAARSNRVQIAFEIYDEMIGKSLRPNCECFTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRCSAGRDAGEAALQVFQEMRETPGCTPDVITYSTVIDALGRGGRFGQVRDVLDEMSREG 606          
The following BLAST results are available for this feature:
BLAST of Gcaud7776.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IJ31_9FLOR9.270e-8066.35Pentatricopeptide repeat-containing protein n=1 Ta... [more]
R7Q6H8_CHOCR1.990e-2645.25Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 492..533
e-value: 5.6E-4
score: 19.9
coord: 313..372
e-value: 7.4E-13
score: 48.4
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 401..434
e-value: 1.8E-9
score: 35.2
coord: 173..207
e-value: 3.2E-7
score: 28.1
coord: 436..470
e-value: 3.0E-9
score: 34.5
coord: 471..501
e-value: 2.6E-6
score: 25.3
coord: 138..172
e-value: 5.1E-7
score: 27.5
coord: 208..236
e-value: 4.3E-5
score: 21.4
coord: 329..362
e-value: 3.7E-6
score: 24.8
coord: 293..327
e-value: 4.3E-8
score: 30.9
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 401..431
e-value: 5.1E-6
score: 26.4
coord: 138..166
e-value: 2.2E-4
score: 21.3
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 253..299
e-value: 2.2E-8
score: 34.1
coord: 433..480
e-value: 4.9E-17
score: 61.9
coord: 170..218
e-value: 1.4E-13
score: 50.8
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 136..170
score: 11.73961
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 399..433
score: 12.616514
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 326..360
score: 10.150222
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 171..205
score: 11.783455
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 469..503
score: 11.783455
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 291..325
score: 12.408249
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 254..290
score: 10.05157
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 206..240
score: 10.347525
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 434..468
score: 12.92343
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 95..246
e-value: 5.3E-34
score: 120.0
coord: 377..585
e-value: 2.1E-44
score: 154.1
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 247..376
e-value: 6.0E-36
score: 126.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 575..590
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 575..597
NoneNo IPR availablePANTHERPTHR47942TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATEDcoord: 377..533
coord: 272..445
coord: 13..373

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1202_length_12719_cov_3.417723contigNODE_1202_length_12719_cov_3.417723:5136..6929 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7776.t1Gcaud7776.t1Gracilaria caudata M_176_S67 malemRNANODE_1202_length_12719_cov_3.417723 5136..6929 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud7776.t1 ID=Gcaud7776.t1|Name=Gcaud7776.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=598bp
LARADAQLVQREIATVSYGALLNAVEACVQSRRYVLCVSLIEAALTQPRL
VQRFSAKMYSHLFMSLMRIGTKAAALRALELLTQTAAVAADADAELAHLL
GPRAYNFVFVALSRVALIDEAREVARMCYQVGYYLNRYSYNALLNACAKR
QRLDAAFETLREMAEHQVSPDVVSFNVLISCCVRTGSVDIALNILSRMKD
WDIKPDIYSYNSVINGLRKSNMLDQAFELVAQMERESQPAGASIVHNGLG
VAPDLVTYNTLLSALASFDRPQFDRALRVKRHMERRGIQCNEVSYNALMA
TAAKSDRVKEAFSIYEEMVSRGLRPNCECFTTLITLCGRANMLDRAFEVH
NHMLASNIRPNVITYNALLTACRGGMSGSSERALNMLETMRSSDTCEPDV
ITYSTVIDVLGRNERFEDMNRVFSEMKRDGIEPNLVTYTSMIAGMTRANK
MEEAMQILNDMERDGVQPNVYTFSSLINGASKRGDFESAMDLLQRMKEKH
IWPSCITYTMLLQLALKMANWRMVSQVLDEMRTDSRVFGAQVDRLEQYVL
RMDLGMPAKTRAAMRRVAELVEDCVGKDPQRGEGHRDMPTRDSLLQP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf