Gcaud1872.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1872.t1
Unique NameGcaud1872.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length272
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_823_length_17514_cov_4.507834contigNODE_823_length_17514_cov_4.507834:1845..2660 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog946362.XP_004995570.1
Preferred nameECHS1
PFAMsECH_1
Max annot lvl33154|Opisthokonta
KEGG rclassRC00770,RC00831,RC00834,RC01086,RC01095,RC01098,RC01103
KEGG koko:K07511
KEGG ReactionR02685,R03026,R03045,R04137,R04170,R04204,R04224,R04738,R04740,R04744,R04746,R04749,R05595,R06942
KEGG Pathwayko00062,ko00071,ko00280,ko00310,ko00380,ko00410,ko00627,ko00640,ko00650,ko00930,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00062,map00071,map00280,map00310,map00380,map00410,map00627,map00640,map00650,map00930,map01100,map01110,map01120,map01130,map01200,map01212
KEGG ModuleM00013,M00032,M00085,M00087
GOsGO:0003674,GO:0003824,GO:0004300,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006082,GO:0006629,GO:0006631,GO:0006635,GO:0008150,GO:0008152,GO:0009056,GO:0009062,GO:0009987,GO:0016042,GO:0016054,GO:0016829,GO:0016835,GO:0016836,GO:0019395,GO:0019752,GO:0030258,GO:0031974,GO:0032787,GO:0034440,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046395,GO:0055114,GO:0070013,GO:0071704,GO:0072329,GO:1901575
Evalue4.64e-52
EggNOG OGsCOG1024@1|root,KOG1680@2759|Eukaryota,38F58@33154|Opisthokonta
EC4.2.1.17
Descriptionenoyl-CoA hydratase activity
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1872Gcaud1872Gracilaria caudata M_176_S67 malegeneNODE_823_length_17514_cov_4.507834 1845..2660 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1872.t1.stop1Gcaud1872.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_823_length_17514_cov_4.507834 1845..1847 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1872.t1.CDS1Gcaud1872.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_823_length_17514_cov_4.507834 1845..2660 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1872.t1.exon1Gcaud1872.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_823_length_17514_cov_4.507834 1845..2660 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1872.t1.start1Gcaud1872.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_823_length_17514_cov_4.507834 2658..2660 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1872.t1Gcaud1872.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_823_length_17514_cov_4.507834 1845..2660 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1872.t1 ID=Gcaud1872.t1|Name=Gcaud1872.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=272bp
MDLTNENEMHPVEAKQTVLLESSTQAGVRVLTLNRPKARNAINRFLSNKL
CDALRRAEADNSVHVVIISATFPVFCAGVDISELQKLTPTSAYEQQWLTD
WPRVMHEMKKPIVVAVDGPALGGGFELVLLADVVFASKRAQFGLPEILLG
TIPGAGGTVKLVESVGKGRALSMIWTGERMGADEAFTRGIVARICDDVDQ
ESMEFAEIVAAQSSNCVRMTKELVKERESEWQNRISLEKMMYYLSFGTTE
FREGCDRFVRRKERRKQNGRD*
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spliced messenger RNA

>Gcaud1872.t1 ID=Gcaud1872.t1|Name=Gcaud1872.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=816bp|location=Sequence derived from alignment at NODE_823_length_17514_cov_4.507834:1845..2660- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACCTTACCAACGAAAACGAAATGCACCCTGTGGAAGCAAAACAGAC
AGTTCTTTTGGAAAGCAGTACTCAGGCCGGGGTTCGGGTTCTCACTCTGA
ACCGCCCCAAAGCGCGCAACGCCATTAACCGTTTTTTGTCAAACAAGCTG
TGTGATGCCCTACGTCGCGCTGAAGCGGACAATTCTGTCCATGTTGTAAT
AATTTCAGCGACATTCCCCGTCTTCTGTGCAGGTGTTGATATAAGTGAAT
TGCAAAAGTTGACACCAACTTCTGCTTATGAGCAGCAATGGTTAACGGAT
TGGCCGCGTGTGATGCATGAAATGAAGAAACCGATTGTAGTTGCTGTGGA
TGGACCTGCTCTTGGTGGCGGGTTCGAATTGGTTTTGTTGGCCGATGTGG
TCTTCGCTTCAAAGAGAGCGCAGTTCGGACTCCCCGAGATTCTACTGGGA
ACAATTCCTGGTGCTGGCGGTACGGTAAAACTTGTCGAGAGCGTTGGAAA
GGGACGGGCTTTGAGTATGATATGGACTGGTGAACGTATGGGTGCTGATG
AGGCGTTTACGAGAGGGATAGTAGCAAGAATTTGTGATGATGTTGATCAG
GAGAGCATGGAATTTGCGGAGATTGTAGCGGCACAGAGTTCCAATTGTGT
GAGAATGACGAAGGAGCTAGTGAAGGAGAGGGAGAGTGAATGGCAGAATC
GAATTTCTCTGGAAAAGATGATGTATTATTTAAGCTTTGGAACGACAGAA
TTTCGAGAGGGATGTGATCGTTTTGTTCGAAGAAAGGAAAGGCGTAAGCA
AAATGGGCGAGATTGA
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protein sequence of Gcaud1872.t1

>Gcaud1872.t1 ID=Gcaud1872.t1|Name=Gcaud1872.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=272bp
MDLTNENEMHPVEAKQTVLLESSTQAGVRVLTLNRPKARNAINRFLSNKL
CDALRRAEADNSVHVVIISATFPVFCAGVDISELQKLTPTSAYEQQWLTD
WPRVMHEMKKPIVVAVDGPALGGGFELVLLADVVFASKRAQFGLPEILLG
TIPGAGGTVKLVESVGKGRALSMIWTGERMGADEAFTRGIVARICDDVDQ
ESMEFAEIVAAQSSNCVRMTKELVKERESEWQNRISLEKMMYYLSFGTTE
FREGCDRFVRRKERRKQNGRD*
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mRNA from alignment at NODE_823_length_17514_cov_4.507834:1845..2660-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1872.t1 ID=Gcaud1872.t1|Name=Gcaud1872.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=816bp|location=Sequence derived from alignment at NODE_823_length_17514_cov_4.507834:1845..2660- (Gracilaria caudata M_176_S67 male)
ATGGACCTTACCAACGAAAACGAAATGCACCCTGTGGAAGCAAAACAGAC
AGTTCTTTTGGAAAGCAGTACTCAGGCCGGGGTTCGGGTTCTCACTCTGA
ACCGCCCCAAAGCGCGCAACGCCATTAACCGTTTTTTGTCAAACAAGCTG
TGTGATGCCCTACGTCGCGCTGAAGCGGACAATTCTGTCCATGTTGTAAT
AATTTCAGCGACATTCCCCGTCTTCTGTGCAGGTGTTGATATAAGTGAAT
TGCAAAAGTTGACACCAACTTCTGCTTATGAGCAGCAATGGTTAACGGAT
TGGCCGCGTGTGATGCATGAAATGAAGAAACCGATTGTAGTTGCTGTGGA
TGGACCTGCTCTTGGTGGCGGGTTCGAATTGGTTTTGTTGGCCGATGTGG
TCTTCGCTTCAAAGAGAGCGCAGTTCGGACTCCCCGAGATTCTACTGGGA
ACAATTCCTGGTGCTGGCGGTACGGTAAAACTTGTCGAGAGCGTTGGAAA
GGGACGGGCTTTGAGTATGATATGGACTGGTGAACGTATGGGTGCTGATG
AGGCGTTTACGAGAGGGATAGTAGCAAGAATTTGTGATGATGTTGATCAG
GAGAGCATGGAATTTGCGGAGATTGTAGCGGCACAGAGTTCCAATTGTGT
GAGAATGACGAAGGAGCTAGTGAAGGAGAGGGAGAGTGAATGGCAGAATC
GAATTTCTCTGGAAAAGATGATGTATTATTTAAGCTTTGGAACGACAGAA
TTTCGAGAGGGATGTGATCGTTTTGTTCGAAGAAAGGAAAGGCGTAAGCA
AAATGGGCGAGATTGA
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Coding sequence (CDS) from alignment at NODE_823_length_17514_cov_4.507834:1845..2660-

>Gcaud1872.t1 ID=Gcaud1872.t1|Name=Gcaud1872.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=816bp|location=Sequence derived from alignment at NODE_823_length_17514_cov_4.507834:1845..2660- (Gracilaria caudata M_176_S67 male)
ATGGACCTTACCAACGAAAACGAAATGCACCCTGTGGAAGCAAAACAGAC
AGTTCTTTTGGAAAGCAGTACTCAGGCCGGGGTTCGGGTTCTCACTCTGA
ACCGCCCCAAAGCGCGCAACGCCATTAACCGTTTTTTGTCAAACAAGCTG
TGTGATGCCCTACGTCGCGCTGAAGCGGACAATTCTGTCCATGTTGTAAT
AATTTCAGCGACATTCCCCGTCTTCTGTGCAGGTGTTGATATAAGTGAAT
TGCAAAAGTTGACACCAACTTCTGCTTATGAGCAGCAATGGTTAACGGAT
TGGCCGCGTGTGATGCATGAAATGAAGAAACCGATTGTAGTTGCTGTGGA
TGGACCTGCTCTTGGTGGCGGGTTCGAATTGGTTTTGTTGGCCGATGTGG
TCTTCGCTTCAAAGAGAGCGCAGTTCGGACTCCCCGAGATTCTACTGGGA
ACAATTCCTGGTGCTGGCGGTACGGTAAAACTTGTCGAGAGCGTTGGAAA
GGGACGGGCTTTGAGTATGATATGGACTGGTGAACGTATGGGTGCTGATG
AGGCGTTTACGAGAGGGATAGTAGCAAGAATTTGTGATGATGTTGATCAG
GAGAGCATGGAATTTGCGGAGATTGTAGCGGCACAGAGTTCCAATTGTGT
GAGAATGACGAAGGAGCTAGTGAAGGAGAGGGAGAGTGAATGGCAGAATC
GAATTTCTCTGGAAAAGATGATGTATTATTTAAGCTTTGGAACGACAGAA
TTTCGAGAGGGATGTGATCGTTTTGTTCGAAGAAAGGAAAGGCGTAAGCA
AAATGGGCGAGATTGA
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