Gcaud1869.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1869.t1
Unique NameGcaud1869.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length73
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1195_length_12786_cov_4.314848contigNODE_1195_length_12786_cov_4.314848:1286..1754 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1869Gcaud1869Gracilaria caudata M_176_S67 malegeneNODE_1195_length_12786_cov_4.314848 1286..1754 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1869.t1Gcaud1869.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1195_length_12786_cov_4.314848 1286..1754 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1869.t1.start1Gcaud1869.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1195_length_12786_cov_4.314848 1286..1288 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1869.t1.CDS1Gcaud1869.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1195_length_12786_cov_4.314848 1286..1303 +
Gcaud1869.t1.CDS2Gcaud1869.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_1195_length_12786_cov_4.314848 1554..1754 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1869.t1.exon1Gcaud1869.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1195_length_12786_cov_4.314848 1286..1303 +
Gcaud1869.t1.exon2Gcaud1869.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_1195_length_12786_cov_4.314848 1554..1754 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1869.t1.intron1Gcaud1869.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_1195_length_12786_cov_4.314848 1304..1553 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1869.t1.stop1Gcaud1869.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1195_length_12786_cov_4.314848 1752..1754 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1869.t1 ID=Gcaud1869.t1|Name=Gcaud1869.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=73bp
MFLAWKLAVTQTIQPIMVVAMRASLVRTAELLTFNNYCGTMLFITSDVRC
FGRNPSPQRSCYQVAFPSYPPA*
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spliced messenger RNA

>Gcaud1869.t1 ID=Gcaud1869.t1|Name=Gcaud1869.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=219bp|location=Sequence derived from alignment at NODE_1195_length_12786_cov_4.314848:1286..1754+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTCTCGCTTGGAAGCTGGCCGTCACACAAACCATACAGCCAATCAT
GGTCGTGGCTATGCGCGCTTCCCTTGTCAGAACTGCCGAGTTATTAACAT
TTAACAACTATTGTGGTACCATGCTCTTCATCACAAGCGACGTCAGGTGC
TTCGGAAGAAATCCTTCTCCACAGCGTTCTTGTTATCAAGTAGCGTTCCC
CTCTTACCCGCCAGCCTAG
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protein sequence of Gcaud1869.t1

>Gcaud1869.t1 ID=Gcaud1869.t1|Name=Gcaud1869.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=73bp
MFLAWKLAVTQTIQPIMVVAMRASLVRTAELLTFNNYCGTMLFITSDVRC
FGRNPSPQRSCYQVAFPSYPPA*
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mRNA from alignment at NODE_1195_length_12786_cov_4.314848:1286..1754+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1869.t1 ID=Gcaud1869.t1|Name=Gcaud1869.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=469bp|location=Sequence derived from alignment at NODE_1195_length_12786_cov_4.314848:1286..1754+ (Gracilaria caudata M_176_S67 male)
ATGTTTCTCGCTTGGAAGGTGAGCCACATAAATCTGTTTTCCGTCACTTT
TGTTGTGTAGTATAATACTGCTTGTCCTCACATTTGTTGTCTTGCTGCTC
ACTTCTATCAACACACAATTTATTGCGTCCACTGGAACCTTGCTCAATAT
TGTTTCGCTGATTAACGAGTCGAATGAAAAAACGAACACCTGATGTGTTT
CCAAACATTCCACCTCCTCCTCGCCCACGCCGTGCCACACAACAATTTCG
AAACACGAGACTATTCAGCTGGCCGTCACACAAACCATACAGCCAATCAT
GGTCGTGGCTATGCGCGCTTCCCTTGTCAGAACTGCCGAGTTATTAACAT
TTAACAACTATTGTGGTACCATGCTCTTCATCACAAGCGACGTCAGGTGC
TTCGGAAGAAATCCTTCTCCACAGCGTTCTTGTTATCAAGTAGCGTTCCC
CTCTTACCCGCCAGCCTAG
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Coding sequence (CDS) from alignment at NODE_1195_length_12786_cov_4.314848:1286..1754+

>Gcaud1869.t1 ID=Gcaud1869.t1|Name=Gcaud1869.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=219bp|location=Sequence derived from alignment at NODE_1195_length_12786_cov_4.314848:1286..1754+ (Gracilaria caudata M_176_S67 male)
ATGTTTCTCGCTTGGAAGCTGGCCGTCACACAAACCATACAGCCAATCAT
GGTCGTGGCTATGCGCGCTTCCCTTGTCAGAACTGCCGAGTTATTAACAT
TTAACAACTATTGTGGTACCATGCTCTTCATCACAAGCGACGTCAGGTGC
TTCGGAAGAAATCCTTCTCCACAGCGTTCTTGTTATCAAGTAGCGTTCCC
CTCTTACCCGCCAGCCTAG
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