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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud3182.t1.stop1 | Gcaud3182.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_80_length_55642_cov_4.475869 713..715 - |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud3182.t1.start1 | Gcaud3182.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_80_length_55642_cov_4.475869 2901..2903 - |
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud3182.t1 ID=Gcaud3182.t1|Name=Gcaud3182.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=179bp
MPLVNDDVRDPHFQLGFGKAYDSLGHALKFDAFVPDGESDLLTWFRDIQV
LCVYLREGLEVTRSVPPVSGARWREGVVGPVAQERVVRALEMGMFEEVLD
EMDDVMVSPSPMMETPTPEAEYMMVLDRTGESMYEVMPTPSMMVETMEPS
PEDYYTMWEMEPTPPEDDLPVTPSPEEL* back to topspliced messenger RNA >Gcaud3182.t1 ID=Gcaud3182.t1|Name=Gcaud3182.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=537bp|location=Sequence derived from alignment at NODE_80_length_55642_cov_4.475869:713..2903- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGCCGCTCGTCAATGACGACGTGCGTGATCCGCATTTCCAGTTGGGATT
TGGGAAGGCTTACGACTCGTTGGGACATGCGCTCAAATTCGACGCCTTCG
TCCCAGATGGTGAATCAGATCTACTGACGTGGTTTCGAGATATTCAAGTG
TTATGCGTGTACCTGCGAGAAGGTTTAGAAGTTACGCGATCGGTTCCGCC
CGTTTCCGGGGCACGGTGGAGAGAAGGCGTTGTCGGGCCTGTGGCTCAGG
AGCGGGTGGTGCGGGCGTTAGAGATGGGGATGTTTGAGGAAGTGCTCGAC
GAGATGGATGATGTGATGGTGAGCCCGTCGCCAATGATGGAGACGCCTAC
GCCCGAGGCGGAGTATATGATGGTGTTGGACAGGACCGGCGAATCGATGT
ACGAGGTGATGCCAACTCCGTCGATGATGGTGGAGACGATGGAGCCGTCG
CCCGAGGACTACTACACGATGTGGGAGATGGAGCCGACGCCACCAGAGGA
CGACCTGCCTGTGACGCCTTCGCCGGAAGAGCTGTGA back to topprotein sequence of Gcaud3182.t1 >Gcaud3182.t1 ID=Gcaud3182.t1|Name=Gcaud3182.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=179bp
MPLVNDDVRDPHFQLGFGKAYDSLGHALKFDAFVPDGESDLLTWFRDIQV
LCVYLREGLEVTRSVPPVSGARWREGVVGPVAQERVVRALEMGMFEEVLD
EMDDVMVSPSPMMETPTPEAEYMMVLDRTGESMYEVMPTPSMMVETMEPS
PEDYYTMWEMEPTPPEDDLPVTPSPEEL* back to topmRNA from alignment at NODE_80_length_55642_cov_4.475869:713..2903- Legend: polypeptideCDSexonstart_codonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud3182.t1 ID=Gcaud3182.t1|Name=Gcaud3182.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2191bp|location=Sequence derived from alignment at NODE_80_length_55642_cov_4.475869:713..2903- (Gracilaria caudata M_176_S67 male)
ATGCCGCTCGTCAATGACGACGTGCGTGATCCGCATTTCCAGTTGGGATT
TGGGAAGGCTTACGACTCGTTGGGACATGCGCGTAAGCGTAGGATGGGTG
TGTGGAGGCGGAAGTTCCAAGAACTCTCTGCTGTAACTACCACGTTACCC
TGGTACATTGTTGTTGAGTCAAATTCGACGCCTTCGGTAAGCATGAATAT
AACAACAGTTGTAAGCCTTACAGGGATCTGCAGTGCGTATCGAAGAAAAA
CAACTGTGTAGCGCAGCTGTGCGAACCCAATCAAAGGCAGCCCTTTATGC
GTTTATACTTACGGACAACCTGATGTTAGTCCCAGATGGTGAATCAGATC
TACTGACGTGGTTTCGAGATATTCAAGTGTTATGCGTGTACCTGCGAGAA
GGTTTAGAAGTTACGCGATGTGCAGATTGGTCAATGACAGATATAACGTG
CCTGGCTCTTGGTGCTCGACGTTTGGCAAAGTCGACAGTGCACACGCGTG
CGACTTCTGGTGTCGAATTGGCAAACGTCAATGCGTCCATCCCCCAATTC
CCAGCGAAGAAGCGAGTGCATCAAGATCGCTCAGGTCGGTCGGGAAACAA
ACTACGAAGGTACCCATCGACGATGATGGGCCATCGTATTTGCAGCTGTA
CTGGCGACAGTTGTGGTGCACTGCGACCAGTAGCAGGGCGCGGGGGCAGC
CAAATACAGCGGTCTAAGCTTATTAATCAGCCAAACAGGGCTGGACGACA
GTGGGTTTTGCGGATAATCAGCAACGATTATAGGCGCAATATTGTGCTGC
TGCAATGGTTGCTGCCAGTCCGATTGCGTGTAATTGCGCTCAGCGTGGAG
CCCTGAGAGCGTGAAGCTGAAGAGGCGCATGTGGTTGGTGCTCGAGCGAA
TCGTACATGGCATGGCGGCCCTTTCAAGAAAGAAGAAATCGCATTAACAT
GTTCCAGTTTATAGCCAACAAGCCGGCAACCAGATAAGTTGGGCTGCACA
CGTCTCAGTTTGAATGTGGCCGCACATGAGGTTGAACGTGGATGGCGGTG
CTTGCGATGGCAGAAGCTGCTAAGCAGACTGCGCAGACAGCATGCGCAAG
GACGTAATGCGGTGAAAACTAATGTAGGACAAGACTAGGTTTACAGCTAC
GCTGTAGGCGGATGCGAGCGCATTGCGGAATATATCCTTGCTGTACAACG
CATTTTGGGGTGAAATCGCAGGAGCTGTAGAATGTATGATGACGCGGGAG
GCACGCAAGACAGGGACACGGCGGCTCTCGCAAGCGTTCCTGGCGTCGAA
ACAGGGCGTTGATCTGGGTGGGGTTATCTGTAACCAACAATTGAGCAACG
GATGCTTGCTGGAAGGTGTATGGGTTGACGAAAGTGAAGCCTCCTTACTT
ACCTGAACGGTGATGGGTGGTCATATTGTAGTTGACAGGTACAGCTACGC
AGCTGGTGAGGACTGATGTGCTCGACAAGATGTGGTTTGAAAGGCGAGTA
AGGTTGTGGCTTACTTTCTGTTGCGCTGGCACTATAAGCACTGCGTGCGC
GCGGCAGCACTGAATTGAATTTGGCAGCGTGTGGAGCGCGAGGTGAGGGT
GCGATGAGTACTAAAGCTGCCTCGAGCGTTCAGCCGAATGTTGCGCGCTT
GTCAGGGCCCCAACGCATTCCCAGACTCAGGCGACTTGCGACAAACCGCG
ACCGGCGCTTTGGTGGACAAGCATTGACCGGAAGCACGTAAGCAAGCAGG
GTGTGAAAGATGTTGGGAAGCAGTACGTTTTGGATGGCGCTTTTGGCGAC
GTGCGCGTCGTTGAGCAGCACTTTTGCGGCGGTATTCCCGCAAGCGGTTC
CGCCCGTTTCCGGGGCACGGTGGAGAGAAGGCGTTGTCGGGCCTGTGGCT
CAGGAGCGGGTGGTGCGGGCGTTAGAGATGGGGATGTTTGAGGAAGTGCT
CGACGAGATGGATGATGTGATGGTGAGCCCGTCGCCAATGATGGAGACGC
CTACGCCCGAGGCGGAGTATATGATGGTGTTGGACAGGACCGGCGAATCG
ATGTACGAGGTGATGCCAACTCCGTCGATGATGGTGGAGACGATGGAGCC
GTCGCCCGAGGACTACTACACGATGTGGGAGATGGAGCCGACGCCACCAG
AGGACGACCTGCCTGTGACGCCTTCGCCGGAAGAGCTGTGA back to topCoding sequence (CDS) from alignment at NODE_80_length_55642_cov_4.475869:713..2903- >Gcaud3182.t1 ID=Gcaud3182.t1|Name=Gcaud3182.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=537bp|location=Sequence derived from alignment at NODE_80_length_55642_cov_4.475869:713..2903- (Gracilaria caudata M_176_S67 male)
ATGCCGCTCGTCAATGACGACGTGCGTGATCCGCATTTCCAGTTGGGATT
TGGGAAGGCTTACGACTCGTTGGGACATGCGCTCAAATTCGACGCCTTCG
TCCCAGATGGTGAATCAGATCTACTGACGTGGTTTCGAGATATTCAAGTG
TTATGCGTGTACCTGCGAGAAGGTTTAGAAGTTACGCGATCGGTTCCGCC
CGTTTCCGGGGCACGGTGGAGAGAAGGCGTTGTCGGGCCTGTGGCTCAGG
AGCGGGTGGTGCGGGCGTTAGAGATGGGGATGTTTGAGGAAGTGCTCGAC
GAGATGGATGATGTGATGGTGAGCCCGTCGCCAATGATGGAGACGCCTAC
GCCCGAGGCGGAGTATATGATGGTGTTGGACAGGACCGGCGAATCGATGT
ACGAGGTGATGCCAACTCCGTCGATGATGGTGGAGACGATGGAGCCGTCG
CCCGAGGACTACTACACGATGTGGGAGATGGAGCCGACGCCACCAGAGGA
CGACCTGCCTGTGACGCCTTCGCCGGAAGAGCTGTGA back to top
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