Gcaud1961.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1961.t1
Unique NameGcaud1961.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length163
Homology
BLAST of Gcaud1961.t1 vs. uniprot
Match: A0A2V3IWB5_9FLOR (SKP1-like protein 11 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IWB5_9FLOR)

HSP 1 Score: 302 bits (773), Expect = 1.840e-103
Identity = 151/163 (92.64%), Postives = 158/163 (96.93%), Query Frame = 0
Query:    1 MAETP-QPNTITLKLRSKDGEIFEVEKPVAMQINFVKGMLEDVDEVDGMEIPMGEVEAAILAKVVEYCRFHYQQELNQTSADEVDRWERSFVQVDKSTLFQMILAANFLDVQSLLDLTCKTVADMIKGKTPEQIRAEFDIHNDFTPEQLEEVRRDNAWCAEDR 162
            MA+ P Q N ITLKL+SKDGEIFEVEKPVAMQINFVKGMLEDVDE+DGMEIPMGEVEAAILAKVVEYC+FHYQQELNQT+ADEVDRWER+FVQVDKSTLFQ+ILAANFLDVQSLLDLTCKTVADMIKGKTPEQIRAEFDI NDFTPEQLEEVRRDNAWCAEDR
Sbjct:    1 MADVPNQINNITLKLKSKDGEIFEVEKPVAMQINFVKGMLEDVDEIDGMEIPMGEVEAAILAKVVEYCKFHYQQELNQTNADEVDRWERAFVQVDKSTLFQLILAANFLDVQSLLDLTCKTVADMIKGKTPEQIRAEFDIDNDFTPEQLEEVRRDNAWCAEDR 163          
BLAST of Gcaud1961.t1 vs. uniprot
Match: R7QD44_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QD44_CHOCR)

HSP 1 Score: 274 bits (700), Expect = 2.560e-92
Identity = 137/164 (83.54%), Postives = 150/164 (91.46%), Query Frame = 0
Query:    1 MAETP--QPNTITLKLRSKDGEIFEVEKPVAMQINFVKGMLEDVDEVDGMEIPMGEVEAAILAKVVEYCRFHYQQELNQTSADEVDRWERSFVQVDKSTLFQMILAANFLDVQSLLDLTCKTVADMIKGKTPEQIRAEFDIHNDFTPEQLEEVRRDNAWCAEDR 162
            MA+ P  Q + I LKL+SKDGE FEVEK VA QINFVKGMLEDVDEVDGMEIPMGEVEA+ILAKVVE+C+F +QQELNQTS DEVDRWE++FVQV+K TLFQ+ILAANFLDVQSLLDLTCKTVADMIKGKTPEQIRAEFDI NDFTPEQL EVRRDNAWC++DR
Sbjct:    1 MADVPPSQQSNIMLKLKSKDGETFEVEKAVATQINFVKGMLEDVDEVDGMEIPMGEVEASILAKVVEFCKFRHQQELNQTSPDEVDRWEKAFVQVEKPTLFQLILAANFLDVQSLLDLTCKTVADMIKGKTPEQIRAEFDIENDFTPEQLAEVRRDNAWCSDDR 164          
BLAST of Gcaud1961.t1 vs. uniprot
Match: A0A7S0ZFH6_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZFH6_9RHOD)

HSP 1 Score: 181 bits (458), Expect = 3.030e-55
Identity = 89/149 (59.73%), Postives = 116/149 (77.85%), Query Frame = 0
Query:   12 LKLRSKDGEIFEVEKPVAMQINFVKGMLEDVDEVDGMEIPMGEVEAAILAKVVEYCRFHYQQELNQTSADEVDRWERSFVQVDKSTLFQMILAANFLDVQSLLDLTCKTVADMIKGKTPEQIRAEFDIHNDFTPEQLEEVRRDNAWCAE 160
            +KL S D E FEVE+ VA   N V  +LEDV E D   IP+  VEA ILAKV+EYCR+H+Q + N  + ++V++W++ FV+VDK TLF +ILAAN+LD+Q+LLDLTCKT+ADMIKGK+ EQIR+EF I NDFTPE+ EE++R+NAW  E
Sbjct:   33 VKLVSSDQETFEVERGVATISNLVSHVLEDVGE-DEKLIPIPNVEARILAKVIEYCRYHHQLQTNPQADEDVEKWDKEFVRVDKPTLFSLILAANYLDIQALLDLTCKTIADMIKGKSAEQIRSEFGIENDFTPEEEEEIKRENAWVEE 180          
BLAST of Gcaud1961.t1 vs. uniprot
Match: M2W233_GALSU (E3 ubiquitin ligase SCF complex SKP1 subunit n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2W233_GALSU)

HSP 1 Score: 175 bits (444), Expect = 1.780e-53
Identity = 86/153 (56.21%), Postives = 113/153 (73.86%), Query Frame = 0
Query:    8 NTITLKLRSKDGEIFEVEKPVAMQINFVKGMLEDVDEVDGMEIPMGEVEAAILAKVVEYCRFHYQQELNQTSADEVDRWERSFVQVDKSTLFQMILAANFLDVQSLLDLTCKTVADMIKGKTPEQIRAEFDIHNDFTPEQLEEVRRDNAWCAE 160
            N+ T+KL S D EIFEVE  +      +K +LED ++ +   IP+  VE  ILAKVVEYCR+H   +    S ++++RW+R F+ VD+ TLF +ILAAN+LD++SLLDLTCK VADMIKGK PE+IR EF+I NDFTPE+ EEVRR+NAWC +
Sbjct:    4 NSKTVKLVSSDNEIFEVETSIISLSETIKNVLEDTEDTES--IPLPNVEGRILAKVVEYCRYHSLLKTIPQSEEDIERWDREFLNVDQPTLFHLILAANYLDIKSLLDLTCKRVADMIKGKKPEEIRKEFNIVNDFTPEEEEEVRRENAWCED 154          
BLAST of Gcaud1961.t1 vs. uniprot
Match: A0A5J4YW41_PORPP (SCF ubiquitin ligase complex protein SKP1a n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YW41_PORPP)

HSP 1 Score: 175 bits (444), Expect = 1.900e-53
Identity = 89/149 (59.73%), Postives = 112/149 (75.17%), Query Frame = 0
Query:   14 LRSKDGEIFEVEKPVAMQINFVKGMLEDVDEVDGMEIPMGEVEAAILAKVVEYCRFHYQQELNQTSADEVDRWERSFVQVDKSTLFQMILAANFLDVQSLLDLTCKTVADMIKGKTPEQIRAEFDIHNDFTPEQLEEVRRDNAWCAEDR 162
            L S D E F VE+ VA     V  +LEDV E +   IP+  VE+AILAKV+EYCR+HY  + N  S +++D+W + FV+VDK TLF +ILAAN++D+QSLLDLTCK+VADMIKGK+ EQIR EF I NDFTPE+ EE+RR+NAW  EDR
Sbjct:   11 LVSSDNETFNVERGVANVSGLVANVLEDVSE-EETTIPIPNVESAILAKVIEYCRYHYHLQSNPQSDEDIDKWNKEFVRVDKPTLFHLILAANYMDIQSLLDLTCKSVADMIKGKSAEQIRGEFGIVNDFTPEEEEEIRRENAW-VEDR 157          
BLAST of Gcaud1961.t1 vs. uniprot
Match: R1ERE6_EMIHU (Uncharacterized protein n=3 Tax=Eukaryota TaxID=2759 RepID=R1ERE6_EMIHU)

HSP 1 Score: 171 bits (432), Expect = 1.260e-51
Identity = 85/149 (57.05%), Postives = 111/149 (74.50%), Query Frame = 0
Query:   12 LKLRSKDGEIFEVEKPVAMQINFVKGMLEDVDEVDGMEIPMGEVEAAILAKVVEYCRFHYQQELNQTSADEVDRWERSFVQVDKSTLFQMILAANFLDVQSLLDLTCKTVADMIKGKTPEQIRAEFDIHNDFTPEQLEEVRRDNAWCAE 160
            +KL+SK  EIFEVEK VA +   VK M+ED      + +PM  V++ IL KV+EYC++H++ E      DE + W++ FV+VD  TLF +ILAAN+LD++SLLDLTCKTVAD IKGKTPE+IR  F+I NDFTPE+ EEV+R+NAWC E
Sbjct:   10 VKLKSKQEEIFEVEKEVACRSVTVKNMVEDTGLDTPVPLPM--VDSKILIKVIEYCKYHHRAEQESLPEDEKNVWDKDFVKVDDETLFNLILAANYLDIKSLLDLTCKTVADEIKGKTPEEIRIRFNIKNDFTPEEEEEVKRENAWCEE 156          
BLAST of Gcaud1961.t1 vs. uniprot
Match: A0A8J5XJL0_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XJL0_DIALT)

HSP 1 Score: 170 bits (430), Expect = 2.620e-51
Identity = 83/149 (55.70%), Postives = 110/149 (73.83%), Query Frame = 0
Query:   12 LKLRSKDGEIFEVEKPVAMQINFVKGMLEDVDEVDGMEIPMGEVEAAILAKVVEYCRFHYQQELNQTSADEVDRWERSFVQVDKSTLFQMILAANFLDVQSLLDLTCKTVADMIKGKTPEQIRAEFDIHNDFTPEQLEEVRRDNAWCAE 160
            +KL+SK  E+FEVE+ VA +   VK M+ED      + +PM  V++ IL KV+EYC++H+  E  +   +E   WE+ FV+VD  TLF +ILAAN+LD++SLLDLTCKTVAD IKGKTPE+IR  F+I NDFTPE+ EEV+R+NAWC E
Sbjct:   11 IKLKSKQEELFEVEREVACRSVTVKNMVEDTGSDTPVPLPM--VDSRILTKVIEYCKYHHGSETARVPEEEKANWEKDFVKVDDETLFNLILAANYLDIKSLLDLTCKTVADEIKGKTPEEIRVRFNITNDFTPEEEEEVKRENAWCEE 157          
BLAST of Gcaud1961.t1 vs. uniprot
Match: A0A7S0QBC9_9EUKA (Hypothetical protein n=2 Tax=Prymnesiophyceae TaxID=2608131 RepID=A0A7S0QBC9_9EUKA)

HSP 1 Score: 167 bits (423), Expect = 2.940e-50
Identity = 82/151 (54.30%), Postives = 113/151 (74.83%), Query Frame = 0
Query:   12 LKLRSKDGEIFEVEKPVAMQINFVKGMLEDVDEVDGME--IPMGEVEAAILAKVVEYCRFHYQQELNQTSADEVDRWERSFVQVDKSTLFQMILAANFLDVQSLLDLTCKTVADMIKGKTPEQIRAEFDIHNDFTPEQLEEVRRDNAWCAE 160
            +KL+SK  EIFEV+K VA +   V+ M+ED     G++  +P+  V++ IL KV+EYC++H++ E      D+ + W++ FV+VD  TLF +ILAAN+LD++SLLDLTCKTVAD IKGKTPE+IR  F+I NDFTPE+ EEV+R+NAWC E
Sbjct:   10 VKLKSKQEEIFEVDKEVACRSVTVRNMVEDT----GLDAPVPLPMVDSKILIKVIEYCKYHHRAEAEALPEDDKNVWDKDFVKVDDETLFNLILAANYLDIKSLLDLTCKTVADEIKGKTPEEIRIRFNIKNDFTPEEEEEVKRENAWCEE 156          
BLAST of Gcaud1961.t1 vs. uniprot
Match: A0A0D6QSJ7_ARACU (SKP1-like protein n=2 Tax=Araucariaceae TaxID=25664 RepID=A0A0D6QSJ7_ARACU)

HSP 1 Score: 167 bits (422), Expect = 3.680e-50
Identity = 83/154 (53.90%), Postives = 113/154 (73.38%), Query Frame = 0
Query:   11 TLKLRSKDGEIFEVEKPVAMQINFVKGMLEDVDEVDGME--IPMGEVEAAILAKVVEYCRFHYQQELNQTSADEVD--RWERSFVQVDKSTLFQMILAANFLDVQSLLDLTCKTVADMIKGKTPEQIRAEFDIHNDFTPEQLEEVRRDNAWCAE 160
            TL+L+S D +IFEVE+ VA +   +K M+ED+    G++  +P+  V   ILA+VVEYCR+H +   N +S  E D  RW   FV VD++TLF +ILAAN+L+++SLLDLTC+TVADMIKGKTPE+IR  F+I NDFTPE+ EE++ +NAW  E
Sbjct:    4 TLRLKSSDDQIFEVEEAVAFESQTIKNMIEDI----GIDTTVPLFNVSGKILARVVEYCRYHVEANRNNSSLSEEDFKRWNEEFVNVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEIKHENAWAFE 153          
BLAST of Gcaud1961.t1 vs. uniprot
Match: S5U247_NEOYE (S-phase kinase-associated protein 1 n=2 Tax=Bangiaceae TaxID=31345 RepID=S5U247_NEOYE)

HSP 1 Score: 166 bits (421), Expect = 1.010e-49
Identity = 89/160 (55.62%), Postives = 117/160 (73.12%), Query Frame = 0
Query:    3 ETPQPNTITLKLRSKDGEIFEVEKPVAMQINFVKGMLEDVDEVDGMEIPMGEVEAAILAKVVEYCRFHYQQELNQTSADEVDRWERSFVQVDKSTLFQMILAANFLDVQSLLDLTCKTVADMIKGKTPEQIRAEFDIHNDFTPEQLEEVRRDNAWCAEDR 162
            E P    IT+   S+D E F VEK VA     ++ +L DV E +  +IP+  V+A ILAKV+EY ++H++        DEV RW+R FV+VDKSTLF ++LAAN+L++QSLLDLT +TVA++IKGKTPEQIRAEF I NDFTPE+ EE++RDNAW +EDR
Sbjct:   19 EAPSKRMITIL--SQDKEKFVVEKGVATMATLIEDLLADVGEGED-KIPLQNVDARILAKVIEYMKYHFKLTETPQPEDEVRRWDREFVRVDKSTLFHLVLAANYLNIQSLLDLTTQTVAELIKGKTPEQIRAEFGIVNDFTPEEEEEIKRDNAW-SEDR 174          
The following BLAST results are available for this feature:
BLAST of Gcaud1961.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IWB5_9FLOR1.840e-10392.64SKP1-like protein 11 n=1 Tax=Gracilariopsis chorda... [more]
R7QD44_CHOCR2.560e-9283.54Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A7S0ZFH6_9RHOD3.030e-5559.73Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
M2W233_GALSU1.780e-5356.21E3 ubiquitin ligase SCF complex SKP1 subunit n=1 T... [more]
A0A5J4YW41_PORPP1.900e-5359.73SCF ubiquitin ligase complex protein SKP1a n=1 Tax... [more]
R1ERE6_EMIHU1.260e-5157.05Uncharacterized protein n=3 Tax=Eukaryota TaxID=27... [more]
A0A8J5XJL0_DIALT2.620e-5155.70Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A7S0QBC9_9EUKA2.940e-5054.30Hypothetical protein n=2 Tax=Prymnesiophyceae TaxI... [more]
A0A0D6QSJ7_ARACU3.680e-5053.90SKP1-like protein n=2 Tax=Araucariaceae TaxID=2566... [more]
S5U247_NEOYE1.010e-4955.63S-phase kinase-associated protein 1 n=2 Tax=Bangia... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001232S-phase kinase-associated protein 1-likeSMARTSM00512skp1_3coord: 9..110
e-value: 1.3E-26
score: 104.4
IPR016897S-phase kinase-associated protein 1PIRSFPIRSF028729SCF_Skpcoord: 1..161
e-value: 4.1E-53
score: 177.4
IPR016897S-phase kinase-associated protein 1PANTHERPTHR11165SKP1coord: 12..159
IPR016072SKP1 component, dimerisationPFAMPF01466Skp1coord: 111..158
e-value: 6.0E-25
score: 87.0
IPR011333SKP1/BTB/POZ domain superfamilyGENE3D3.30.710.10Potassium Channel Kv1.1; Chain Acoord: 7..161
e-value: 9.3E-57
score: 193.6
IPR011333SKP1/BTB/POZ domain superfamilySUPERFAMILY54695POZ domaincoord: 12..73
IPR016073SKP1 component, POZ domainPFAMPF03931Skp1_POZcoord: 12..71
e-value: 5.3E-19
score: 68.2
NoneNo IPR availablePANTHERPTHR11165:SF122SUBFAMILY NOT NAMEDcoord: 12..159
NoneNo IPR availableCDDcd18322BTB_POZ_SKP1coord: 11..125
e-value: 1.21575E-44
score: 141.19
IPR036296SKP1-like, dimerisation domain superfamilySUPERFAMILY81382Skp1 dimerisation domain-likecoord: 84..158

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_802_length_17758_cov_4.100526contigNODE_802_length_17758_cov_4.100526:8041..8749 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1961.t1Gcaud1961.t1Gracilaria caudata M_176_S67 malemRNANODE_802_length_17758_cov_4.100526 8041..8749 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1961.t1 ID=Gcaud1961.t1|Name=Gcaud1961.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=163bp
MAETPQPNTITLKLRSKDGEIFEVEKPVAMQINFVKGMLEDVDEVDGMEI
PMGEVEAAILAKVVEYCRFHYQQELNQTSADEVDRWERSFVQVDKSTLFQ
MILAANFLDVQSLLDLTCKTVADMIKGKTPEQIRAEFDIHNDFTPEQLEE
VRRDNAWCAEDR*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001232SKP1-like
IPR016897SKP1
IPR016072Skp1_comp_dimer
IPR011333SKP1/BTB/POZ_sf
IPR016073Skp1_comp_POZ
IPR036296SKP1-like_dim_sf