Gcaud2012.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2012.t1
Unique Name	Gcaud2012.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	601

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_801_length_17760_cov_4.605977	contig	NODE_801_length_17760_cov_4.605977:479..2281 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	15368.BRADI1G29760.1
PFAMs	Glyco_transf_92
Max annot lvl	35493\|Streptophyta
Evalue	1.65e-15
EggNOG OGs	COG0463@1\|root,2QTF9@2759\|Eukaryota,37N9S@33090\|Viridiplantae,3GBHN@35493\|Streptophyta,3KVVU@4447\|Liliopsida,3I4Q3@38820\|Poales
Description	Glycosyltransferase family 92
COG category	M

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2012	Gcaud2012	Gracilaria caudata M_176_S67 male	gene	NODE_801_length_17760_cov_4.605977 479..2281 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2012.t1.stop1	Gcaud2012.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_801_length_17760_cov_4.605977 479..481 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2012.t1.CDS1	Gcaud2012.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_801_length_17760_cov_4.605977 479..2281 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2012.t1.exon1	Gcaud2012.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_801_length_17760_cov_4.605977 479..2281 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2012.t1.start1	Gcaud2012.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_801_length_17760_cov_4.605977 2279..2281 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2012.t1	Gcaud2012.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_801_length_17760_cov_4.605977 479..2281 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_801_length_17760_cov_4.605977:479..2281-
coding sequence from alignment at NODE_801_length_17760_cov_4.605977:479..2281-

mRNA sequence

>Gcaud2012.t1 ID=Gcaud2012.t1|Name=Gcaud2012.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=601bp
MSSRPCKRDVGIRLDEPLLGSFNRLSALLARIRVSVNSTSVTRIVLVVAV
LILVAAVLVPPLVIQEELLTHKTWLRSYREFAAKVISARSQSLFSTIAST
ERSEQWRLPPHIATTYTLHRNTPEAEQLTPTHWTRPYVFLHYARPFPTNR
SQTELFIYATGVTMGSFDRGFVVYGCLVGNDVYPSETYKGDVFSCTVPRH
IEEEEFISLVLPRNEYVDEQLQNTVQIHDSINVTLLHGDLVPLPNDTRLH
FQDSDLEQIISQPLMYVKSQQKFEALGDDIDPEAVDSEPRYEVCLATQIK
PFTNYLHDWISYYKHIGVDMVYVIDNGAEQDLSKKYKHRDDVQVLYWPWR
RSQTQAFSYMLVAARPRCEWIMMADVDEFAMLGIGKDHQLAGKQVLRAYL
RRRLNSMYKQFMFWFLVMGNSGHLTAPNGPMPEVYIHRFGRQTNNGKSVA
YTDHWWKSSGVHHVVGVPSSQAPVKRNSSNFFEPVDEDDQPIMVHYHHRA
FEDFVTKERYGSASTTDGKSDPTTAVSMPQAAPKWMTKVDDQLQYTYFRD
IYRAIMKTPFEFKQSLVRKSMGRRCVAKRRNTGKQQTTHAAVEEEQCDVP
*

spliced messenger RNA

>Gcaud2012.t1 ID=Gcaud2012.t1|Name=Gcaud2012.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1803bp|location=Sequence derived from alignment at NODE_801_length_17760_cov_4.605977:479..2281- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTTCACGGCCGTGCAAACGCGATGTGGGCATTCGGCTCGATGAACC
GCTTCTCGGATCGTTCAATCGACTTTCTGCTTTGCTAGCGCGAATTCGAG
TCTCGGTGAACAGCACGTCCGTAACTCGCATTGTGCTCGTCGTCGCCGTT
TTGATATTGGTGGCAGCTGTCTTGGTACCTCCGTTGGTAATCCAAGAAGA
GCTTCTGACTCATAAAACGTGGTTACGTAGCTACAGAGAGTTTGCTGCAA
AAGTCATTTCAGCCCGCTCGCAATCGTTATTCTCGACTATCGCGTCAACT
GAACGTTCCGAACAATGGCGTCTTCCACCTCACATAGCAACTACGTACAC
ATTACATCGAAACACTCCCGAAGCTGAGCAGCTCACCCCCACGCATTGGA
CTCGTCCCTATGTATTCTTGCATTATGCCAGACCGTTTCCCACAAATCGT
TCGCAAACAGAGCTCTTCATCTATGCTACTGGGGTCACAATGGGGTCCTT
CGATCGTGGTTTTGTGGTTTACGGTTGCCTAGTCGGTAATGACGTATATC
CATCCGAAACATACAAGGGAGACGTATTTTCGTGCACTGTTCCTCGTCAT
ATTGAAGAAGAAGAGTTCATATCCCTGGTTTTGCCTCGCAATGAGTATGT
CGACGAACAGTTACAAAACACTGTTCAAATTCATGATTCCATCAATGTTA
CTCTTCTTCACGGTGATCTTGTCCCACTGCCTAATGATACTCGGCTTCAT
TTCCAGGATTCAGACTTGGAACAAATTATTTCTCAACCGTTGATGTACGT
CAAATCACAGCAGAAATTTGAAGCACTTGGAGATGACATTGATCCAGAAG
CTGTTGATTCAGAACCGCGGTATGAAGTCTGTCTCGCTACCCAAATCAAA
CCATTTACGAATTATCTACATGATTGGATCTCGTATTACAAGCATATCGG
CGTTGACATGGTGTATGTCATAGACAACGGTGCGGAACAAGATCTTTCTA
AAAAGTATAAACATCGCGATGATGTTCAAGTTCTTTACTGGCCTTGGCGT
CGATCTCAAACCCAAGCCTTCAGTTATATGCTAGTTGCGGCGCGACCTCG
GTGTGAATGGATTATGATGGCCGATGTAGATGAATTTGCAATGCTCGGTA
TCGGAAAAGATCATCAACTTGCGGGTAAACAAGTTTTGAGAGCATATTTG
AGACGACGTTTGAACAGCATGTATAAACAGTTCATGTTTTGGTTCTTGGT
TATGGGAAATTCTGGGCATCTTACAGCTCCGAATGGGCCGATGCCAGAAG
TATATATTCATAGATTTGGAAGACAAACAAATAATGGAAAGTCCGTGGCA
TACACAGACCACTGGTGGAAGAGTTCTGGTGTGCATCATGTTGTGGGAGT
ACCTTCATCACAGGCTCCCGTGAAGCGAAACTCTTCCAACTTTTTTGAAC
CGGTTGATGAAGATGATCAGCCGATCATGGTTCATTATCATCATCGTGCG
TTTGAGGATTTTGTAACGAAGGAAAGATATGGATCTGCGTCTACGACGGA
TGGAAAGAGCGATCCTACAACGGCTGTCTCAATGCCTCAAGCTGCGCCGA
AGTGGATGACAAAGGTCGATGATCAGTTACAATACACTTACTTTCGTGAT
ATCTATCGTGCAATCATGAAAACTCCTTTTGAGTTTAAACAGAGCCTTGT
TAGAAAGTCGATGGGAAGAAGATGTGTGGCTAAGCGACGGAATACTGGAA
AACAACAAACGACACACGCGGCCGTTGAAGAAGAGCAATGTGACGTTCCA
TAA

protein sequence of Gcaud2012.t1

>Gcaud2012.t1 ID=Gcaud2012.t1|Name=Gcaud2012.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=601bp
MSSRPCKRDVGIRLDEPLLGSFNRLSALLARIRVSVNSTSVTRIVLVVAV
LILVAAVLVPPLVIQEELLTHKTWLRSYREFAAKVISARSQSLFSTIAST
ERSEQWRLPPHIATTYTLHRNTPEAEQLTPTHWTRPYVFLHYARPFPTNR
SQTELFIYATGVTMGSFDRGFVVYGCLVGNDVYPSETYKGDVFSCTVPRH
IEEEEFISLVLPRNEYVDEQLQNTVQIHDSINVTLLHGDLVPLPNDTRLH
FQDSDLEQIISQPLMYVKSQQKFEALGDDIDPEAVDSEPRYEVCLATQIK
PFTNYLHDWISYYKHIGVDMVYVIDNGAEQDLSKKYKHRDDVQVLYWPWR
RSQTQAFSYMLVAARPRCEWIMMADVDEFAMLGIGKDHQLAGKQVLRAYL
RRRLNSMYKQFMFWFLVMGNSGHLTAPNGPMPEVYIHRFGRQTNNGKSVA
YTDHWWKSSGVHHVVGVPSSQAPVKRNSSNFFEPVDEDDQPIMVHYHHRA
FEDFVTKERYGSASTTDGKSDPTTAVSMPQAAPKWMTKVDDQLQYTYFRD
IYRAIMKTPFEFKQSLVRKSMGRRCVAKRRNTGKQQTTHAAVEEEQCDVP
*

mRNA from alignment at NODE_801_length_17760_cov_4.605977:479..2281-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2012.t1 ID=Gcaud2012.t1|Name=Gcaud2012.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1803bp|location=Sequence derived from alignment at NODE_801_length_17760_cov_4.605977:479..2281- (Gracilaria caudata M_176_S67 male)
ATGTCTTCACGGCCGTGCAAACGCGATGTGGGCATTCGGCTCGATGAACC
GCTTCTCGGATCGTTCAATCGACTTTCTGCTTTGCTAGCGCGAATTCGAG
TCTCGGTGAACAGCACGTCCGTAACTCGCATTGTGCTCGTCGTCGCCGTT
TTGATATTGGTGGCAGCTGTCTTGGTACCTCCGTTGGTAATCCAAGAAGA
GCTTCTGACTCATAAAACGTGGTTACGTAGCTACAGAGAGTTTGCTGCAA
AAGTCATTTCAGCCCGCTCGCAATCGTTATTCTCGACTATCGCGTCAACT
GAACGTTCCGAACAATGGCGTCTTCCACCTCACATAGCAACTACGTACAC
ATTACATCGAAACACTCCCGAAGCTGAGCAGCTCACCCCCACGCATTGGA
CTCGTCCCTATGTATTCTTGCATTATGCCAGACCGTTTCCCACAAATCGT
TCGCAAACAGAGCTCTTCATCTATGCTACTGGGGTCACAATGGGGTCCTT
CGATCGTGGTTTTGTGGTTTACGGTTGCCTAGTCGGTAATGACGTATATC
CATCCGAAACATACAAGGGAGACGTATTTTCGTGCACTGTTCCTCGTCAT
ATTGAAGAAGAAGAGTTCATATCCCTGGTTTTGCCTCGCAATGAGTATGT
CGACGAACAGTTACAAAACACTGTTCAAATTCATGATTCCATCAATGTTA
CTCTTCTTCACGGTGATCTTGTCCCACTGCCTAATGATACTCGGCTTCAT
TTCCAGGATTCAGACTTGGAACAAATTATTTCTCAACCGTTGATGTACGT
CAAATCACAGCAGAAATTTGAAGCACTTGGAGATGACATTGATCCAGAAG
CTGTTGATTCAGAACCGCGGTATGAAGTCTGTCTCGCTACCCAAATCAAA
CCATTTACGAATTATCTACATGATTGGATCTCGTATTACAAGCATATCGG
CGTTGACATGGTGTATGTCATAGACAACGGTGCGGAACAAGATCTTTCTA
AAAAGTATAAACATCGCGATGATGTTCAAGTTCTTTACTGGCCTTGGCGT
CGATCTCAAACCCAAGCCTTCAGTTATATGCTAGTTGCGGCGCGACCTCG
GTGTGAATGGATTATGATGGCCGATGTAGATGAATTTGCAATGCTCGGTA
TCGGAAAAGATCATCAACTTGCGGGTAAACAAGTTTTGAGAGCATATTTG
AGACGACGTTTGAACAGCATGTATAAACAGTTCATGTTTTGGTTCTTGGT
TATGGGAAATTCTGGGCATCTTACAGCTCCGAATGGGCCGATGCCAGAAG
TATATATTCATAGATTTGGAAGACAAACAAATAATGGAAAGTCCGTGGCA
TACACAGACCACTGGTGGAAGAGTTCTGGTGTGCATCATGTTGTGGGAGT
ACCTTCATCACAGGCTCCCGTGAAGCGAAACTCTTCCAACTTTTTTGAAC
CGGTTGATGAAGATGATCAGCCGATCATGGTTCATTATCATCATCGTGCG
TTTGAGGATTTTGTAACGAAGGAAAGATATGGATCTGCGTCTACGACGGA
TGGAAAGAGCGATCCTACAACGGCTGTCTCAATGCCTCAAGCTGCGCCGA
AGTGGATGACAAAGGTCGATGATCAGTTACAATACACTTACTTTCGTGAT
ATCTATCGTGCAATCATGAAAACTCCTTTTGAGTTTAAACAGAGCCTTGT
TAGAAAGTCGATGGGAAGAAGATGTGTGGCTAAGCGACGGAATACTGGAA
AACAACAAACGACACACGCGGCCGTTGAAGAAGAGCAATGTGACGTTCCA
TAA

Coding sequence (CDS) from alignment at NODE_801_length_17760_cov_4.605977:479..2281-

>Gcaud2012.t1 ID=Gcaud2012.t1|Name=Gcaud2012.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1803bp|location=Sequence derived from alignment at NODE_801_length_17760_cov_4.605977:479..2281- (Gracilaria caudata M_176_S67 male)
ATGTCTTCACGGCCGTGCAAACGCGATGTGGGCATTCGGCTCGATGAACC
GCTTCTCGGATCGTTCAATCGACTTTCTGCTTTGCTAGCGCGAATTCGAG
TCTCGGTGAACAGCACGTCCGTAACTCGCATTGTGCTCGTCGTCGCCGTT
TTGATATTGGTGGCAGCTGTCTTGGTACCTCCGTTGGTAATCCAAGAAGA
GCTTCTGACTCATAAAACGTGGTTACGTAGCTACAGAGAGTTTGCTGCAA
AAGTCATTTCAGCCCGCTCGCAATCGTTATTCTCGACTATCGCGTCAACT
GAACGTTCCGAACAATGGCGTCTTCCACCTCACATAGCAACTACGTACAC
ATTACATCGAAACACTCCCGAAGCTGAGCAGCTCACCCCCACGCATTGGA
CTCGTCCCTATGTATTCTTGCATTATGCCAGACCGTTTCCCACAAATCGT
TCGCAAACAGAGCTCTTCATCTATGCTACTGGGGTCACAATGGGGTCCTT
CGATCGTGGTTTTGTGGTTTACGGTTGCCTAGTCGGTAATGACGTATATC
CATCCGAAACATACAAGGGAGACGTATTTTCGTGCACTGTTCCTCGTCAT
ATTGAAGAAGAAGAGTTCATATCCCTGGTTTTGCCTCGCAATGAGTATGT
CGACGAACAGTTACAAAACACTGTTCAAATTCATGATTCCATCAATGTTA
CTCTTCTTCACGGTGATCTTGTCCCACTGCCTAATGATACTCGGCTTCAT
TTCCAGGATTCAGACTTGGAACAAATTATTTCTCAACCGTTGATGTACGT
CAAATCACAGCAGAAATTTGAAGCACTTGGAGATGACATTGATCCAGAAG
CTGTTGATTCAGAACCGCGGTATGAAGTCTGTCTCGCTACCCAAATCAAA
CCATTTACGAATTATCTACATGATTGGATCTCGTATTACAAGCATATCGG
CGTTGACATGGTGTATGTCATAGACAACGGTGCGGAACAAGATCTTTCTA
AAAAGTATAAACATCGCGATGATGTTCAAGTTCTTTACTGGCCTTGGCGT
CGATCTCAAACCCAAGCCTTCAGTTATATGCTAGTTGCGGCGCGACCTCG
GTGTGAATGGATTATGATGGCCGATGTAGATGAATTTGCAATGCTCGGTA
TCGGAAAAGATCATCAACTTGCGGGTAAACAAGTTTTGAGAGCATATTTG
AGACGACGTTTGAACAGCATGTATAAACAGTTCATGTTTTGGTTCTTGGT
TATGGGAAATTCTGGGCATCTTACAGCTCCGAATGGGCCGATGCCAGAAG
TATATATTCATAGATTTGGAAGACAAACAAATAATGGAAAGTCCGTGGCA
TACACAGACCACTGGTGGAAGAGTTCTGGTGTGCATCATGTTGTGGGAGT
ACCTTCATCACAGGCTCCCGTGAAGCGAAACTCTTCCAACTTTTTTGAAC
CGGTTGATGAAGATGATCAGCCGATCATGGTTCATTATCATCATCGTGCG
TTTGAGGATTTTGTAACGAAGGAAAGATATGGATCTGCGTCTACGACGGA
TGGAAAGAGCGATCCTACAACGGCTGTCTCAATGCCTCAAGCTGCGCCGA
AGTGGATGACAAAGGTCGATGATCAGTTACAATACACTTACTTTCGTGAT
ATCTATCGTGCAATCATGAAAACTCCTTTTGAGTTTAAACAGAGCCTTGT
TAGAAAGTCGATGGGAAGAAGATGTGTGGCTAAGCGACGGAATACTGGAA
AACAACAAACGACACACGCGGCCGTTGAAGAAGAGCAATGTGACGTTCCA
TAA