Gcaud2858.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2858.t1
Unique Name	Gcaud2858.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	285

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_7_length_102599_cov_4.541909	contig	NODE_7_length_102599_cov_4.541909:89875..90729 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	159749.K0R3M1
PFAMs	Sulfotransfer_1
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K01025,ko:K18273,ko:K22312
Evalue	0.000124
EggNOG OGs	KOG1584@1\|root,KOG1584@2759\|Eukaryota
EC	2.8.2.39
Description	sulfotransferase activity
COG category	S
BRITE	ko00000,ko01000,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2858	Gcaud2858	Gracilaria caudata M_176_S67 male	gene	NODE_7_length_102599_cov_4.541909 89875..90729 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2858.t1.stop1	Gcaud2858.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_7_length_102599_cov_4.541909 89875..89877 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2858.t1.CDS1	Gcaud2858.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_7_length_102599_cov_4.541909 89875..90729 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2858.t1.exon1	Gcaud2858.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_7_length_102599_cov_4.541909 89875..90729 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2858.t1.start1	Gcaud2858.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_7_length_102599_cov_4.541909 90727..90729 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2858.t1	Gcaud2858.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_7_length_102599_cov_4.541909 89875..90729 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_7_length_102599_cov_4.541909:89875..90729-
coding sequence from alignment at NODE_7_length_102599_cov_4.541909:89875..90729-

mRNA sequence

>Gcaud2858.t1 ID=Gcaud2858.t1|Name=Gcaud2858.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=285bp
MVCENACQSFEPKNQRSEMAFVPSMAFSTQSIHIRGGSLCVWRGDRHIVG
RWSSFRGKTLPLQPRSRQTLAQPVKERSRVAPTAMLGGGGFLGVGTSEVA
VILLVGWLLLGPEKLFALAKDTGKILGELRRTADKAKEQFNEAVELDLMA
AEMKDKKFIEASEGSENGTASMNTFEDYNEPEPLKTTELVNELNSPSSQP
MKAIDLEEQSKEEVNDAFLDQLRRVSDPGQRAPSEIPDLEIDEEEEVRRL
EQQYLEAKRRLERRKFEEQDRPEQNENKSVVGER*

spliced messenger RNA

>Gcaud2858.t1 ID=Gcaud2858.t1|Name=Gcaud2858.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=855bp|location=Sequence derived from alignment at NODE_7_length_102599_cov_4.541909:89875..90729- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGTGTGAAAACGCTTGTCAGAGCTTTGAACCGAAGAATCAACGGAG
CGAGATGGCATTTGTTCCGTCGATGGCATTTTCGACGCAAAGTATTCATA
TTCGAGGGGGTAGTCTGTGCGTCTGGCGTGGGGATCGACATATCGTTGGG
AGGTGGTCTTCCTTCCGCGGCAAGACATTGCCCTTGCAACCTCGCTCGCG
TCAAACGTTGGCACAACCGGTTAAAGAGAGATCCCGGGTGGCTCCGACTG
CTATGCTTGGTGGGGGTGGGTTTTTAGGAGTAGGGACTTCTGAAGTCGCT
GTCATTCTTCTCGTCGGATGGCTGTTGCTCGGACCCGAGAAATTGTTTGC
TCTCGCGAAGGACACAGGAAAAATACTTGGTGAACTGCGAAGGACTGCGG
ACAAGGCCAAAGAACAGTTTAACGAAGCAGTCGAACTAGATTTAATGGCG
GCGGAAATGAAGGACAAGAAATTCATTGAAGCTTCCGAAGGAAGTGAGAA
CGGGACCGCGTCAATGAACACATTCGAGGACTACAACGAACCAGAACCAC
TGAAGACAACAGAGCTGGTGAACGAATTGAACTCACCTAGTAGCCAACCG
ATGAAAGCAATTGATCTGGAGGAGCAAAGTAAGGAGGAGGTGAACGATGC
ATTTCTTGACCAACTAAGACGGGTTTCCGACCCGGGCCAAAGAGCTCCCA
GCGAGATTCCTGACCTCGAAATTGATGAGGAAGAGGAAGTGAGGAGACTT
GAGCAACAGTATTTGGAGGCAAAGCGACGACTGGAAAGGCGGAAATTCGA
AGAACAGGATCGCCCCGAACAAAATGAAAACAAGTCGGTTGTTGGGGAGA
GATAA

protein sequence of Gcaud2858.t1

>Gcaud2858.t1 ID=Gcaud2858.t1|Name=Gcaud2858.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=285bp
MVCENACQSFEPKNQRSEMAFVPSMAFSTQSIHIRGGSLCVWRGDRHIVG
RWSSFRGKTLPLQPRSRQTLAQPVKERSRVAPTAMLGGGGFLGVGTSEVA
VILLVGWLLLGPEKLFALAKDTGKILGELRRTADKAKEQFNEAVELDLMA
AEMKDKKFIEASEGSENGTASMNTFEDYNEPEPLKTTELVNELNSPSSQP
MKAIDLEEQSKEEVNDAFLDQLRRVSDPGQRAPSEIPDLEIDEEEEVRRL
EQQYLEAKRRLERRKFEEQDRPEQNENKSVVGER*

mRNA from alignment at NODE_7_length_102599_cov_4.541909:89875..90729-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2858.t1 ID=Gcaud2858.t1|Name=Gcaud2858.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=855bp|location=Sequence derived from alignment at NODE_7_length_102599_cov_4.541909:89875..90729- (Gracilaria caudata M_176_S67 male)
ATGGTGTGTGAAAACGCTTGTCAGAGCTTTGAACCGAAGAATCAACGGAG
CGAGATGGCATTTGTTCCGTCGATGGCATTTTCGACGCAAAGTATTCATA
TTCGAGGGGGTAGTCTGTGCGTCTGGCGTGGGGATCGACATATCGTTGGG
AGGTGGTCTTCCTTCCGCGGCAAGACATTGCCCTTGCAACCTCGCTCGCG
TCAAACGTTGGCACAACCGGTTAAAGAGAGATCCCGGGTGGCTCCGACTG
CTATGCTTGGTGGGGGTGGGTTTTTAGGAGTAGGGACTTCTGAAGTCGCT
GTCATTCTTCTCGTCGGATGGCTGTTGCTCGGACCCGAGAAATTGTTTGC
TCTCGCGAAGGACACAGGAAAAATACTTGGTGAACTGCGAAGGACTGCGG
ACAAGGCCAAAGAACAGTTTAACGAAGCAGTCGAACTAGATTTAATGGCG
GCGGAAATGAAGGACAAGAAATTCATTGAAGCTTCCGAAGGAAGTGAGAA
CGGGACCGCGTCAATGAACACATTCGAGGACTACAACGAACCAGAACCAC
TGAAGACAACAGAGCTGGTGAACGAATTGAACTCACCTAGTAGCCAACCG
ATGAAAGCAATTGATCTGGAGGAGCAAAGTAAGGAGGAGGTGAACGATGC
ATTTCTTGACCAACTAAGACGGGTTTCCGACCCGGGCCAAAGAGCTCCCA
GCGAGATTCCTGACCTCGAAATTGATGAGGAAGAGGAAGTGAGGAGACTT
GAGCAACAGTATTTGGAGGCAAAGCGACGACTGGAAAGGCGGAAATTCGA
AGAACAGGATCGCCCCGAACAAAATGAAAACAAGTCGGTTGTTGGGGAGA
GATAA

Coding sequence (CDS) from alignment at NODE_7_length_102599_cov_4.541909:89875..90729-

>Gcaud2858.t1 ID=Gcaud2858.t1|Name=Gcaud2858.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=855bp|location=Sequence derived from alignment at NODE_7_length_102599_cov_4.541909:89875..90729- (Gracilaria caudata M_176_S67 male)
ATGGTGTGTGAAAACGCTTGTCAGAGCTTTGAACCGAAGAATCAACGGAG
CGAGATGGCATTTGTTCCGTCGATGGCATTTTCGACGCAAAGTATTCATA
TTCGAGGGGGTAGTCTGTGCGTCTGGCGTGGGGATCGACATATCGTTGGG
AGGTGGTCTTCCTTCCGCGGCAAGACATTGCCCTTGCAACCTCGCTCGCG
TCAAACGTTGGCACAACCGGTTAAAGAGAGATCCCGGGTGGCTCCGACTG
CTATGCTTGGTGGGGGTGGGTTTTTAGGAGTAGGGACTTCTGAAGTCGCT
GTCATTCTTCTCGTCGGATGGCTGTTGCTCGGACCCGAGAAATTGTTTGC
TCTCGCGAAGGACACAGGAAAAATACTTGGTGAACTGCGAAGGACTGCGG
ACAAGGCCAAAGAACAGTTTAACGAAGCAGTCGAACTAGATTTAATGGCG
GCGGAAATGAAGGACAAGAAATTCATTGAAGCTTCCGAAGGAAGTGAGAA
CGGGACCGCGTCAATGAACACATTCGAGGACTACAACGAACCAGAACCAC
TGAAGACAACAGAGCTGGTGAACGAATTGAACTCACCTAGTAGCCAACCG
ATGAAAGCAATTGATCTGGAGGAGCAAAGTAAGGAGGAGGTGAACGATGC
ATTTCTTGACCAACTAAGACGGGTTTCCGACCCGGGCCAAAGAGCTCCCA
GCGAGATTCCTGACCTCGAAATTGATGAGGAAGAGGAAGTGAGGAGACTT
GAGCAACAGTATTTGGAGGCAAAGCGACGACTGGAAAGGCGGAAATTCGA
AGAACAGGATCGCCCCGAACAAAATGAAAACAAGTCGGTTGTTGGGGAGA
GATAA