Gcaud2837.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2837.t1
Unique Name	Gcaud2837.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	369

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_7_length_102599_cov_4.541909	contig	NODE_7_length_102599_cov_4.541909:38213..39319 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2837	Gcaud2837	Gracilaria caudata M_176_S67 male	gene	NODE_7_length_102599_cov_4.541909 38213..39319 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2837.t1.stop1	Gcaud2837.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_7_length_102599_cov_4.541909 38213..38215 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2837.t1.CDS1	Gcaud2837.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_7_length_102599_cov_4.541909 38213..39319 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2837.t1.exon1	Gcaud2837.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_7_length_102599_cov_4.541909 38213..39319 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2837.t1.start1	Gcaud2837.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_7_length_102599_cov_4.541909 39317..39319 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2837.t1	Gcaud2837.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_7_length_102599_cov_4.541909 38213..39319 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_7_length_102599_cov_4.541909:38213..39319-
coding sequence from alignment at NODE_7_length_102599_cov_4.541909:38213..39319-

mRNA sequence

>Gcaud2837.t1 ID=Gcaud2837.t1|Name=Gcaud2837.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=369bp
MRVHTTSTTRAFSHAALRRPTQALLSSRKKSSKLLRPLTVSILLILVLVL
LLVHSPTHSKPFRFLFDPESSDSEGDHIYDDQFARAARHARPFPECTTAS
ERAKSFLIVFMGHSGSSAVLSELRSHSQVYMEIGELVDHQPVLNSSEALE
TTASFFERGISEGKLPGFKIRPTHILNKPEEFRKLAGKYQTRILWNYRRN
LFKASVGEYSHRYLNDTAVVEGLRENVTQEQRCNQGAGCRFRIDDFQFLH
DTIRNKVRSHHAIIDAVHIISGGNGCVREVPYEDYLYDREDVMRDIQAFL
GLPHEKTRPSRFKATGDNLCEVVDNWDQLCHNFYGCFVWQKMLEDARNGC
FCKYASGPTKYCSTEPVE*

spliced messenger RNA

>Gcaud2837.t1 ID=Gcaud2837.t1|Name=Gcaud2837.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1107bp|location=Sequence derived from alignment at NODE_7_length_102599_cov_4.541909:38213..39319- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGGTGCATACCACCTCCACCACCAGAGCCTTCTCACATGCCGCTTT
GCGTCGTCCTACCCAGGCTCTTCTCTCAAGTCGAAAGAAATCTTCCAAGT
TGCTCCGTCCGCTTACTGTATCGATCCTTCTAATTCTGGTTTTGGTCCTA
CTTCTTGTTCATTCTCCCACTCATTCGAAACCATTCAGGTTTCTTTTTGA
CCCGGAATCATCCGACTCAGAAGGGGATCATATCTACGATGATCAATTTG
CCAGAGCTGCCCGTCACGCACGACCTTTTCCCGAATGTACTACCGCCTCC
GAACGAGCAAAATCTTTCCTCATTGTGTTTATGGGACATTCTGGTTCATC
CGCGGTGCTTTCTGAATTGCGCTCTCATTCACAAGTTTATATGGAAATTG
GTGAGTTAGTCGATCACCAACCAGTCCTTAATTCTAGCGAAGCTCTGGAA
ACGACGGCTTCATTTTTCGAACGCGGCATAAGTGAAGGTAAACTGCCGGG
CTTCAAAATCAGGCCTACGCATATCCTCAACAAACCAGAGGAGTTCCGTA
AACTTGCTGGAAAGTATCAAACACGGATACTTTGGAACTATAGAAGAAAC
CTTTTCAAGGCGAGTGTCGGAGAGTACTCACACCGATACTTAAACGACAC
CGCGGTTGTAGAAGGCTTACGAGAGAATGTCACCCAGGAGCAACGATGCA
ATCAAGGGGCTGGCTGTCGTTTCCGAATCGATGACTTCCAGTTTCTTCAC
GATACTATTCGTAACAAAGTGCGAAGTCATCACGCGATTATTGATGCTGT
TCACATCATAAGTGGTGGAAATGGATGTGTTCGTGAGGTTCCATATGAAG
ATTACTTGTATGATCGAGAAGATGTTATGAGAGACATTCAAGCATTTCTT
GGATTGCCTCATGAAAAAACCCGACCTTCCCGCTTTAAGGCCACCGGTGA
CAATCTATGCGAAGTGGTTGACAATTGGGATCAACTTTGCCACAACTTTT
ACGGGTGTTTCGTGTGGCAGAAAATGCTTGAGGATGCTCGAAATGGTTGT
TTCTGCAAATATGCCAGTGGTCCTACAAAGTATTGCAGCACTGAACCGGT
GGAATAG

protein sequence of Gcaud2837.t1

>Gcaud2837.t1 ID=Gcaud2837.t1|Name=Gcaud2837.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=369bp
MRVHTTSTTRAFSHAALRRPTQALLSSRKKSSKLLRPLTVSILLILVLVL
LLVHSPTHSKPFRFLFDPESSDSEGDHIYDDQFARAARHARPFPECTTAS
ERAKSFLIVFMGHSGSSAVLSELRSHSQVYMEIGELVDHQPVLNSSEALE
TTASFFERGISEGKLPGFKIRPTHILNKPEEFRKLAGKYQTRILWNYRRN
LFKASVGEYSHRYLNDTAVVEGLRENVTQEQRCNQGAGCRFRIDDFQFLH
DTIRNKVRSHHAIIDAVHIISGGNGCVREVPYEDYLYDREDVMRDIQAFL
GLPHEKTRPSRFKATGDNLCEVVDNWDQLCHNFYGCFVWQKMLEDARNGC
FCKYASGPTKYCSTEPVE*

mRNA from alignment at NODE_7_length_102599_cov_4.541909:38213..39319-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2837.t1 ID=Gcaud2837.t1|Name=Gcaud2837.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1107bp|location=Sequence derived from alignment at NODE_7_length_102599_cov_4.541909:38213..39319- (Gracilaria caudata M_176_S67 male)
ATGAGGGTGCATACCACCTCCACCACCAGAGCCTTCTCACATGCCGCTTT
GCGTCGTCCTACCCAGGCTCTTCTCTCAAGTCGAAAGAAATCTTCCAAGT
TGCTCCGTCCGCTTACTGTATCGATCCTTCTAATTCTGGTTTTGGTCCTA
CTTCTTGTTCATTCTCCCACTCATTCGAAACCATTCAGGTTTCTTTTTGA
CCCGGAATCATCCGACTCAGAAGGGGATCATATCTACGATGATCAATTTG
CCAGAGCTGCCCGTCACGCACGACCTTTTCCCGAATGTACTACCGCCTCC
GAACGAGCAAAATCTTTCCTCATTGTGTTTATGGGACATTCTGGTTCATC
CGCGGTGCTTTCTGAATTGCGCTCTCATTCACAAGTTTATATGGAAATTG
GTGAGTTAGTCGATCACCAACCAGTCCTTAATTCTAGCGAAGCTCTGGAA
ACGACGGCTTCATTTTTCGAACGCGGCATAAGTGAAGGTAAACTGCCGGG
CTTCAAAATCAGGCCTACGCATATCCTCAACAAACCAGAGGAGTTCCGTA
AACTTGCTGGAAAGTATCAAACACGGATACTTTGGAACTATAGAAGAAAC
CTTTTCAAGGCGAGTGTCGGAGAGTACTCACACCGATACTTAAACGACAC
CGCGGTTGTAGAAGGCTTACGAGAGAATGTCACCCAGGAGCAACGATGCA
ATCAAGGGGCTGGCTGTCGTTTCCGAATCGATGACTTCCAGTTTCTTCAC
GATACTATTCGTAACAAAGTGCGAAGTCATCACGCGATTATTGATGCTGT
TCACATCATAAGTGGTGGAAATGGATGTGTTCGTGAGGTTCCATATGAAG
ATTACTTGTATGATCGAGAAGATGTTATGAGAGACATTCAAGCATTTCTT
GGATTGCCTCATGAAAAAACCCGACCTTCCCGCTTTAAGGCCACCGGTGA
CAATCTATGCGAAGTGGTTGACAATTGGGATCAACTTTGCCACAACTTTT
ACGGGTGTTTCGTGTGGCAGAAAATGCTTGAGGATGCTCGAAATGGTTGT
TTCTGCAAATATGCCAGTGGTCCTACAAAGTATTGCAGCACTGAACCGGT
GGAATAG

Coding sequence (CDS) from alignment at NODE_7_length_102599_cov_4.541909:38213..39319-

>Gcaud2837.t1 ID=Gcaud2837.t1|Name=Gcaud2837.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1107bp|location=Sequence derived from alignment at NODE_7_length_102599_cov_4.541909:38213..39319- (Gracilaria caudata M_176_S67 male)
ATGAGGGTGCATACCACCTCCACCACCAGAGCCTTCTCACATGCCGCTTT
GCGTCGTCCTACCCAGGCTCTTCTCTCAAGTCGAAAGAAATCTTCCAAGT
TGCTCCGTCCGCTTACTGTATCGATCCTTCTAATTCTGGTTTTGGTCCTA
CTTCTTGTTCATTCTCCCACTCATTCGAAACCATTCAGGTTTCTTTTTGA
CCCGGAATCATCCGACTCAGAAGGGGATCATATCTACGATGATCAATTTG
CCAGAGCTGCCCGTCACGCACGACCTTTTCCCGAATGTACTACCGCCTCC
GAACGAGCAAAATCTTTCCTCATTGTGTTTATGGGACATTCTGGTTCATC
CGCGGTGCTTTCTGAATTGCGCTCTCATTCACAAGTTTATATGGAAATTG
GTGAGTTAGTCGATCACCAACCAGTCCTTAATTCTAGCGAAGCTCTGGAA
ACGACGGCTTCATTTTTCGAACGCGGCATAAGTGAAGGTAAACTGCCGGG
CTTCAAAATCAGGCCTACGCATATCCTCAACAAACCAGAGGAGTTCCGTA
AACTTGCTGGAAAGTATCAAACACGGATACTTTGGAACTATAGAAGAAAC
CTTTTCAAGGCGAGTGTCGGAGAGTACTCACACCGATACTTAAACGACAC
CGCGGTTGTAGAAGGCTTACGAGAGAATGTCACCCAGGAGCAACGATGCA
ATCAAGGGGCTGGCTGTCGTTTCCGAATCGATGACTTCCAGTTTCTTCAC
GATACTATTCGTAACAAAGTGCGAAGTCATCACGCGATTATTGATGCTGT
TCACATCATAAGTGGTGGAAATGGATGTGTTCGTGAGGTTCCATATGAAG
ATTACTTGTATGATCGAGAAGATGTTATGAGAGACATTCAAGCATTTCTT
GGATTGCCTCATGAAAAAACCCGACCTTCCCGCTTTAAGGCCACCGGTGA
CAATCTATGCGAAGTGGTTGACAATTGGGATCAACTTTGCCACAACTTTT
ACGGGTGTTTCGTGTGGCAGAAAATGCTTGAGGATGCTCGAAATGGTTGT
TTCTGCAAATATGCCAGTGGTCCTACAAAGTATTGCAGCACTGAACCGGT
GGAATAG