Gcaud8877.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud8877.t1
Unique NameGcaud8877.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length381
Homology
BLAST of Gcaud8877.t1 vs. uniprot
Match: A0A2V3IL84_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IL84_9FLOR)

HSP 1 Score: 201 bits (510), Expect = 3.650e-58
Identity = 127/325 (39.08%), Postives = 175/325 (53.85%), Query Frame = 0
Query:   66 HFESGGSILRVGRTSRNADALIMEDNEFSLGPTLVVDEFRASVPMNISTVSGTVGAEFQDFSFLGSARS---GLSSRNSLIFDKRTYAENKVIIEGPMYMTYLFQRSRSPLHDTGQY---SFVRCDVPRLELTSGEPEEVSGNCEVANIERNVTLAGIWDTLAEHTEPLRQMEKTFPRLSISELGKRTVMVFDLAIALSLDSCGDSYVAYLPSSEISRTSVIIICALGGITFVSLVAAALSVLITRGTLNWNGSNQRVINLVARSDSIEQKSCWNIATASKVDVVIEPAYGDLESTTYYAHA-----IPRGATSNPVQKANVKLI 379
            HF +GG ILRVGRT +N DAL++ED E+S G   ++ E      +N+S+  G    +   + FL +       L++  S I    TY     I EGP+Y            H T  Y   +F +C VPR++L       V GNC VA +ER+   +GI+         LR ++  F  + +S LG+ ++M+ DLAI L    CGD+YVAYLP S ISRTSV+I+CALG     S VAA +S+ ITR T NWNGS QRV++L A S+ +      + A  +  DVVIE      E  T++        +P  ATSNPV KA+ KL+
Sbjct:    2 HFNTGGKILRVGRTGQNLDALLVEDEEYSHGHAHLLKESFIEAKINVSSPRGNYKVDINAWDFLENTTGYPEDLTAHYSTIVRNATYLPTIQITEGPLYFVICIFG-----HGTENYMKCAFGKCAVPRVDLPYSRFRLVRGNCSVAFLERSTAKSGIFRGFEPEASSLRYLDLAFGHVDVSFLGQGSIMINDLAITLQSKPCGDTYVAYLPPSNISRTSVVIVCALGITALASCVAAIMSLFITRHTFNWNGSYQRVVSLAASSEQMRVFGRNDFAAVATADVVIE------ERPTHHGKGLCVRIVPTDATSNPVPKASRKLL 315          
BLAST of Gcaud8877.t1 vs. uniprot
Match: A0A2V3J1R8_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1R8_9FLOR)

HSP 1 Score: 187 bits (476), Expect = 2.960e-52
Identity = 123/319 (38.56%), Postives = 172/319 (53.92%), Query Frame = 0
Query:    2 LLCFQAIFSVITMVLIIFAPIGVSESKDYRVDRNHTVQGDSLCRMNVQTFYDTRL-GEAAERVKKHFESGGSILRVGRTSRNADALIMEDNEFSLGPTLVVDEFRASVPMNISTVSGTVGAEFQDFS-FLGSARSGLSSRNSLIF---------DKRTYAENKVIIEGPMYMTYLFQRSRSPLHDTGQYSFVRCDVPRLELTSGEPEEVSGNCEVANIERNVTLAGIWDTLAEHTEPLRQMEKTFPRLSISELGKRTVMVFDLAIALSLDSCGDSYVAYLPSSEISRTSVIIICALGGITFVSLVAAALSVLITRGTLN 309
            LL  Q I       L+  APIG+SESK+  V R HT+ G++LC    +  Y++ + G A ERV KHF +GG ++ VG+T RN DA+++E+   SLG  +VVD++     +N+S   G +     + + FL +    L S  S  F         +      N  I++GP Y+           +   + +F RC VP +EL  GE   V GNC VA IER    AG + +      PL+ ++ +F  L +SELGKR+ MV DLA  L    CGD+YVAYLP SE+S  S+ IIC+LG I+ V  V A +S  ITR T N
Sbjct:   78 LLIIQTIILAFLRTLMSLAPIGISESKNLSVHRYHTIPGEALCYR--EGLYNSEMIGMATERVIKHFNAGGKVISVGKTGRNHDAILLENERSSLGHAVVVDKWDMEARINVS--DGNISTFTLNLTQFLRNTTGYLHSVYSNDFFLTHSVVPMNTTPLPNNGAIVDGPFYVIVCTHNPLVNENKMEKCAFSRCAVPHVELQPGEVVSVRGNCSVATIERQAFKAGAFRSYYGSASPLKYLDISFKGLDVSELGKRSQMVGDLAFILRSRPCGDTYVAYLPPSEVSWVSIAIICSLGTISLVVSVVAIMSFSITRNTFN 392          
BLAST of Gcaud8877.t1 vs. uniprot
Match: A0A2V3IYY8_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IYY8_9FLOR)

HSP 1 Score: 98.2 bits (243), Expect = 5.530e-21
Identity = 59/154 (38.31%), Postives = 86/154 (55.84%), Query Frame = 0
Query:  231 MEKTFPRLSISELGKRTVMVFDLAIALSLDSCGDSYVAYLPSSEISRTSVIIICALGGITFVSLVAAALSVLITRGTLNWNGSNQRVINLVARSDSIEQKSCWNIATASKVDVVIEPAYGDLESTTY-----YAHAIPRGATSNPVQKANVKLI 379
            +++ F  L ++ELG+R++MV DL+  L    C ++YVAYLP S++S  S+ I+C+LG I+    VAA +S  +T+ T+NWNGS  RVINL A SD I      +       DVV+E      E  TY     + H +    +S  V   + KLI
Sbjct:    3 LDEAFNALDVAELGQRSIMVSDLSEILRSPKCSNTYVAYLPLSKVSWVSIAILCSLGSISVFWCVAAIISFFVTKDTINWNGSCDRVINLAASSDPIGLCDHKDFTAVGSTDVVME------ERETYGGPIQHVHIVSASVSSQTVLGTSSKLI 150          
BLAST of Gcaud8877.t1 vs. uniprot
Match: A0A2V3IYW1_9FLOR (FHA domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IYW1_9FLOR)

HSP 1 Score: 98.2 bits (243), Expect = 1.680e-20
Identity = 51/112 (45.54%), Postives = 75/112 (66.96%), Query Frame = 0
Query:    2 LLCFQAIFSVITMVLIIFAPIGVSESKDYRVDRNHTVQGDSLCRMNVQTFYDTRLGEAAERVKKHFESGGSILRVGRTSRNADALIMEDNEFSLGPTLVVDEFRASVPMNIS 113
            LL  Q IF+V+ + L I APIG+SESK+  V RN T+ G++LC        +  +G A ER+ KHF +GG+ILR+GRT R+ DA++MED + SLG  ++VD++     +N+S
Sbjct:   78 LLAIQTIFTVLVLALEILAPIGISESKELSVRRNQTLPGETLCLEYDVNQDNEMIGFALERIVKHFRAGGNILRLGRTGRSHDAILMEDEKKSLGHAVLVDKWDMQAKLNLS 189          
The following BLAST results are available for this feature:
BLAST of Gcaud8877.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3IL84_9FLOR3.650e-5839.08Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3J1R8_9FLOR2.960e-5238.56Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IYY8_9FLOR5.530e-2138.31Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IYW1_9FLOR1.680e-2045.54FHA domain-containing protein n=1 Tax=Gracilariops... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 25..246
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 269..279
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..24
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 304..380
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 280..303
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 247..268
NoneNo IPR availableTMHMMTMhelixcoord: 2..24
NoneNo IPR availableTMHMMTMhelixcoord: 279..301

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_79_length_55646_cov_4.454091contigNODE_79_length_55646_cov_4.454091:5341..6483 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8877.t1Gcaud8877.t1Gracilaria caudata M_176_S67 malemRNANODE_79_length_55646_cov_4.454091 5341..6483 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud8877.t1 ID=Gcaud8877.t1|Name=Gcaud8877.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=381bp
MLLCFQAIFSVITMVLIIFAPIGVSESKDYRVDRNHTVQGDSLCRMNVQT
FYDTRLGEAAERVKKHFESGGSILRVGRTSRNADALIMEDNEFSLGPTLV
VDEFRASVPMNISTVSGTVGAEFQDFSFLGSARSGLSSRNSLIFDKRTYA
ENKVIIEGPMYMTYLFQRSRSPLHDTGQYSFVRCDVPRLELTSGEPEEVS
GNCEVANIERNVTLAGIWDTLAEHTEPLRQMEKTFPRLSISELGKRTVMV
FDLAIALSLDSCGDSYVAYLPSSEISRTSVIIICALGGITFVSLVAAALS
VLITRGTLNWNGSNQRVINLVARSDSIEQKSCWNIATASKVDVVIEPAYG
DLESTTYYAHAIPRGATSNPVQKANVKLIH*
back to top