Gcaud2044.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2044.t1
Unique NameGcaud2044.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length208
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_795_length_17855_cov_4.297850contigNODE_795_length_17855_cov_4.297850:3205..3828 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog248742.XP_005645810.1
Preferred nameMRPS6
PFAMsRibosomal_S6
Max annot lvl3041|Chlorophyta
KEGG koko:K02990
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
Evalue1.3e-10
EggNOG OGsCOG0360@1|root,KOG4708@2759|Eukaryota,37XEN@33090|Viridiplantae,34IFX@3041|Chlorophyta
Descriptionribosomal protein S6
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2044Gcaud2044Gracilaria caudata M_176_S67 malegeneNODE_795_length_17855_cov_4.297850 3205..3828 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2044.t1.stop1Gcaud2044.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_795_length_17855_cov_4.297850 3205..3207 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2044.t1.CDS1Gcaud2044.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_795_length_17855_cov_4.297850 3205..3828 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2044.t1.exon1Gcaud2044.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_795_length_17855_cov_4.297850 3205..3828 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2044.t1.start1Gcaud2044.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_795_length_17855_cov_4.297850 3826..3828 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2044.t1Gcaud2044.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_795_length_17855_cov_4.297850 3205..3828 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2044.t1 ID=Gcaud2044.t1|Name=Gcaud2044.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=208bp
MPYYELLCLAKGNLPRKELGSLLHKTCRAFMDNGAIVTRIRPLGATGNGP
RDLAYRIRINQVSYHKGFFVNFCAFASPQTLAEVSRQLKVDERVLRHLAI
RKPITDAVKPIPDIDQPPPRGGRLDPNDPEYALQKFLEEYERDFGKKEED
EGDKELLDIDDVSSVPQTQASGEVNEVVAGLKAWSKSEKPKKDHSLSWLS
GLKGQPS*
back to top

spliced messenger RNA

>Gcaud2044.t1 ID=Gcaud2044.t1|Name=Gcaud2044.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=624bp|location=Sequence derived from alignment at NODE_795_length_17855_cov_4.297850:3205..3828- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGTACTACGAACTTCTTTGTCTTGCAAAGGGCAATTTACCACGTAA
GGAGTTAGGCAGTCTTCTTCACAAGACTTGCCGTGCATTTATGGACAACG
GAGCTATCGTCACAAGGATTAGACCGCTAGGCGCGACTGGAAACGGACCG
CGAGATCTAGCCTACAGAATAAGAATCAATCAGGTTTCATACCACAAGGG
ATTCTTCGTCAATTTCTGCGCTTTCGCTTCACCGCAGACATTGGCTGAGG
TTAGCCGCCAGCTCAAAGTTGACGAGAGAGTTCTGCGACACCTTGCAATA
CGCAAACCCATCACGGATGCTGTCAAGCCAATCCCAGACATAGACCAACC
GCCACCAAGAGGAGGAAGACTCGATCCCAATGACCCAGAATACGCGTTGC
AGAAATTCCTGGAAGAGTATGAGAGAGATTTTGGAAAGAAGGAAGAAGAC
GAAGGTGACAAGGAGCTTCTTGACATTGATGACGTTTCTTCAGTACCACA
AACACAAGCATCTGGAGAAGTAAATGAGGTAGTAGCAGGCCTCAAAGCCT
GGTCGAAATCTGAGAAGCCAAAGAAAGATCACAGCTTGAGCTGGCTCTCA
GGCCTTAAAGGGCAGCCATCATAG
back to top

protein sequence of Gcaud2044.t1

>Gcaud2044.t1 ID=Gcaud2044.t1|Name=Gcaud2044.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=208bp
MPYYELLCLAKGNLPRKELGSLLHKTCRAFMDNGAIVTRIRPLGATGNGP
RDLAYRIRINQVSYHKGFFVNFCAFASPQTLAEVSRQLKVDERVLRHLAI
RKPITDAVKPIPDIDQPPPRGGRLDPNDPEYALQKFLEEYERDFGKKEED
EGDKELLDIDDVSSVPQTQASGEVNEVVAGLKAWSKSEKPKKDHSLSWLS
GLKGQPS*
back to top

mRNA from alignment at NODE_795_length_17855_cov_4.297850:3205..3828-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2044.t1 ID=Gcaud2044.t1|Name=Gcaud2044.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=624bp|location=Sequence derived from alignment at NODE_795_length_17855_cov_4.297850:3205..3828- (Gracilaria caudata M_176_S67 male)
ATGCCGTACTACGAACTTCTTTGTCTTGCAAAGGGCAATTTACCACGTAA
GGAGTTAGGCAGTCTTCTTCACAAGACTTGCCGTGCATTTATGGACAACG
GAGCTATCGTCACAAGGATTAGACCGCTAGGCGCGACTGGAAACGGACCG
CGAGATCTAGCCTACAGAATAAGAATCAATCAGGTTTCATACCACAAGGG
ATTCTTCGTCAATTTCTGCGCTTTCGCTTCACCGCAGACATTGGCTGAGG
TTAGCCGCCAGCTCAAAGTTGACGAGAGAGTTCTGCGACACCTTGCAATA
CGCAAACCCATCACGGATGCTGTCAAGCCAATCCCAGACATAGACCAACC
GCCACCAAGAGGAGGAAGACTCGATCCCAATGACCCAGAATACGCGTTGC
AGAAATTCCTGGAAGAGTATGAGAGAGATTTTGGAAAGAAGGAAGAAGAC
GAAGGTGACAAGGAGCTTCTTGACATTGATGACGTTTCTTCAGTACCACA
AACACAAGCATCTGGAGAAGTAAATGAGGTAGTAGCAGGCCTCAAAGCCT
GGTCGAAATCTGAGAAGCCAAAGAAAGATCACAGCTTGAGCTGGCTCTCA
GGCCTTAAAGGGCAGCCATCATAG
back to top

Coding sequence (CDS) from alignment at NODE_795_length_17855_cov_4.297850:3205..3828-

>Gcaud2044.t1 ID=Gcaud2044.t1|Name=Gcaud2044.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=624bp|location=Sequence derived from alignment at NODE_795_length_17855_cov_4.297850:3205..3828- (Gracilaria caudata M_176_S67 male)
ATGCCGTACTACGAACTTCTTTGTCTTGCAAAGGGCAATTTACCACGTAA
GGAGTTAGGCAGTCTTCTTCACAAGACTTGCCGTGCATTTATGGACAACG
GAGCTATCGTCACAAGGATTAGACCGCTAGGCGCGACTGGAAACGGACCG
CGAGATCTAGCCTACAGAATAAGAATCAATCAGGTTTCATACCACAAGGG
ATTCTTCGTCAATTTCTGCGCTTTCGCTTCACCGCAGACATTGGCTGAGG
TTAGCCGCCAGCTCAAAGTTGACGAGAGAGTTCTGCGACACCTTGCAATA
CGCAAACCCATCACGGATGCTGTCAAGCCAATCCCAGACATAGACCAACC
GCCACCAAGAGGAGGAAGACTCGATCCCAATGACCCAGAATACGCGTTGC
AGAAATTCCTGGAAGAGTATGAGAGAGATTTTGGAAAGAAGGAAGAAGAC
GAAGGTGACAAGGAGCTTCTTGACATTGATGACGTTTCTTCAGTACCACA
AACACAAGCATCTGGAGAAGTAAATGAGGTAGTAGCAGGCCTCAAAGCCT
GGTCGAAATCTGAGAAGCCAAAGAAAGATCACAGCTTGAGCTGGCTCTCA
GGCCTTAAAGGGCAGCCATCATAG
back to top