Gcaud2050.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2050.t1
Unique Name	Gcaud2050.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	282

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_795_length_17855_cov_4.297850	contig	NODE_795_length_17855_cov_4.297850:13770..14615 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3702.AT1G69526.2
PFAMs	Methyltransf_11
Max annot lvl	35493\|Streptophyta
Evalue	9.29e-39
EggNOG OGs	COG0500@1\|root,KOG4300@2759\|Eukaryota,37NZW@33090\|Viridiplantae,3G9DE@35493\|Streptophyta,3HYC1@3699\|Brassicales
Description	Hypothetical methyltransferase
COG category	Q

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2050	Gcaud2050	Gracilaria caudata M_176_S67 male	gene	NODE_795_length_17855_cov_4.297850 13770..14615 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2050.t1.stop1	Gcaud2050.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_795_length_17855_cov_4.297850 13770..13772 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2050.t1.CDS1	Gcaud2050.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_795_length_17855_cov_4.297850 13770..14615 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2050.t1.exon1	Gcaud2050.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_795_length_17855_cov_4.297850 13770..14615 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2050.t1.start1	Gcaud2050.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_795_length_17855_cov_4.297850 14613..14615 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2050.t1	Gcaud2050.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_795_length_17855_cov_4.297850 13770..14615 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_795_length_17855_cov_4.297850:13770..14615-
coding sequence from alignment at NODE_795_length_17855_cov_4.297850:13770..14615-

mRNA sequence

>Gcaud2050.t1 ID=Gcaud2050.t1|Name=Gcaud2050.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=282bp
MTLREAFVVVACGFGGSQSSETHHAKPHRVSRRSLCKLGISTVVCTAVNA
CAVRAQLLEDASNALDKYMKESFAREMEYGMRSYEALIAEKKKKLFRMID
DGSTVVDVGIGTGPNIRYMPKNVKLIGIEPNKFMWQYAQEKARLSGIDLT
MMQDECENLPLRDQSCDVVITTLTLCSVRSPTRAVEEMFRVLKRGGKLLF
IEHVIAPRRRWLLRAVQKVVNPLQVALADGCHVNRDTLAYLKDVNKGVYE
GIEYEEFDALFGGIEDWVSVIKPHVGGFVVK*

spliced messenger RNA

>Gcaud2050.t1 ID=Gcaud2050.t1|Name=Gcaud2050.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=846bp|location=Sequence derived from alignment at NODE_795_length_17855_cov_4.297850:13770..14615- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTCTTCGCGAAGCATTCGTCGTGGTCGCTTGTGGTTTTGGCGGGAG
CCAATCTTCCGAGACTCACCACGCGAAGCCACACAGAGTTTCCCGTCGCT
CGTTGTGCAAACTGGGCATATCAACTGTGGTTTGCACTGCTGTTAATGCT
TGTGCGGTGCGAGCGCAGTTATTAGAGGATGCGAGCAATGCGTTGGACAA
ATACATGAAGGAGAGTTTTGCACGCGAGATGGAGTACGGAATGAGGTCTT
ACGAAGCGCTCATTGCCGAGAAGAAGAAGAAGCTGTTCCGCATGATCGAC
GATGGCAGTACGGTGGTGGATGTTGGAATAGGAACGGGTCCTAATATTCG
GTACATGCCGAAGAATGTGAAACTGATTGGAATCGAACCTAACAAGTTCA
TGTGGCAGTATGCTCAGGAAAAGGCACGTTTATCGGGGATTGATTTGACG
ATGATGCAGGACGAGTGCGAGAATTTACCGCTGCGTGATCAGAGTTGTGA
TGTGGTGATCACGACACTGACGTTGTGTTCGGTACGATCGCCAACTCGGG
CAGTGGAAGAAATGTTTCGCGTGCTGAAACGTGGCGGGAAGTTGTTATTC
ATTGAACACGTGATCGCGCCACGAAGACGATGGCTGCTGCGTGCAGTGCA
AAAGGTTGTGAATCCTCTGCAAGTAGCTCTTGCGGATGGGTGTCATGTGA
ACAGAGACACGTTGGCGTACTTGAAGGACGTGAACAAGGGTGTATATGAA
GGGATTGAATACGAAGAATTTGATGCGTTGTTTGGTGGGATTGAGGACTG
GGTGAGCGTGATTAAGCCGCATGTTGGTGGTTTTGTGGTGAAGTAG

protein sequence of Gcaud2050.t1

>Gcaud2050.t1 ID=Gcaud2050.t1|Name=Gcaud2050.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=282bp
MTLREAFVVVACGFGGSQSSETHHAKPHRVSRRSLCKLGISTVVCTAVNA
CAVRAQLLEDASNALDKYMKESFAREMEYGMRSYEALIAEKKKKLFRMID
DGSTVVDVGIGTGPNIRYMPKNVKLIGIEPNKFMWQYAQEKARLSGIDLT
MMQDECENLPLRDQSCDVVITTLTLCSVRSPTRAVEEMFRVLKRGGKLLF
IEHVIAPRRRWLLRAVQKVVNPLQVALADGCHVNRDTLAYLKDVNKGVYE
GIEYEEFDALFGGIEDWVSVIKPHVGGFVVK*

mRNA from alignment at NODE_795_length_17855_cov_4.297850:13770..14615-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2050.t1 ID=Gcaud2050.t1|Name=Gcaud2050.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=846bp|location=Sequence derived from alignment at NODE_795_length_17855_cov_4.297850:13770..14615- (Gracilaria caudata M_176_S67 male)
ATGACTCTTCGCGAAGCATTCGTCGTGGTCGCTTGTGGTTTTGGCGGGAG
CCAATCTTCCGAGACTCACCACGCGAAGCCACACAGAGTTTCCCGTCGCT
CGTTGTGCAAACTGGGCATATCAACTGTGGTTTGCACTGCTGTTAATGCT
TGTGCGGTGCGAGCGCAGTTATTAGAGGATGCGAGCAATGCGTTGGACAA
ATACATGAAGGAGAGTTTTGCACGCGAGATGGAGTACGGAATGAGGTCTT
ACGAAGCGCTCATTGCCGAGAAGAAGAAGAAGCTGTTCCGCATGATCGAC
GATGGCAGTACGGTGGTGGATGTTGGAATAGGAACGGGTCCTAATATTCG
GTACATGCCGAAGAATGTGAAACTGATTGGAATCGAACCTAACAAGTTCA
TGTGGCAGTATGCTCAGGAAAAGGCACGTTTATCGGGGATTGATTTGACG
ATGATGCAGGACGAGTGCGAGAATTTACCGCTGCGTGATCAGAGTTGTGA
TGTGGTGATCACGACACTGACGTTGTGTTCGGTACGATCGCCAACTCGGG
CAGTGGAAGAAATGTTTCGCGTGCTGAAACGTGGCGGGAAGTTGTTATTC
ATTGAACACGTGATCGCGCCACGAAGACGATGGCTGCTGCGTGCAGTGCA
AAAGGTTGTGAATCCTCTGCAAGTAGCTCTTGCGGATGGGTGTCATGTGA
ACAGAGACACGTTGGCGTACTTGAAGGACGTGAACAAGGGTGTATATGAA
GGGATTGAATACGAAGAATTTGATGCGTTGTTTGGTGGGATTGAGGACTG
GGTGAGCGTGATTAAGCCGCATGTTGGTGGTTTTGTGGTGAAGTAG

Coding sequence (CDS) from alignment at NODE_795_length_17855_cov_4.297850:13770..14615-

>Gcaud2050.t1 ID=Gcaud2050.t1|Name=Gcaud2050.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=846bp|location=Sequence derived from alignment at NODE_795_length_17855_cov_4.297850:13770..14615- (Gracilaria caudata M_176_S67 male)
ATGACTCTTCGCGAAGCATTCGTCGTGGTCGCTTGTGGTTTTGGCGGGAG
CCAATCTTCCGAGACTCACCACGCGAAGCCACACAGAGTTTCCCGTCGCT
CGTTGTGCAAACTGGGCATATCAACTGTGGTTTGCACTGCTGTTAATGCT
TGTGCGGTGCGAGCGCAGTTATTAGAGGATGCGAGCAATGCGTTGGACAA
ATACATGAAGGAGAGTTTTGCACGCGAGATGGAGTACGGAATGAGGTCTT
ACGAAGCGCTCATTGCCGAGAAGAAGAAGAAGCTGTTCCGCATGATCGAC
GATGGCAGTACGGTGGTGGATGTTGGAATAGGAACGGGTCCTAATATTCG
GTACATGCCGAAGAATGTGAAACTGATTGGAATCGAACCTAACAAGTTCA
TGTGGCAGTATGCTCAGGAAAAGGCACGTTTATCGGGGATTGATTTGACG
ATGATGCAGGACGAGTGCGAGAATTTACCGCTGCGTGATCAGAGTTGTGA
TGTGGTGATCACGACACTGACGTTGTGTTCGGTACGATCGCCAACTCGGG
CAGTGGAAGAAATGTTTCGCGTGCTGAAACGTGGCGGGAAGTTGTTATTC
ATTGAACACGTGATCGCGCCACGAAGACGATGGCTGCTGCGTGCAGTGCA
AAAGGTTGTGAATCCTCTGCAAGTAGCTCTTGCGGATGGGTGTCATGTGA
ACAGAGACACGTTGGCGTACTTGAAGGACGTGAACAAGGGTGTATATGAA
GGGATTGAATACGAAGAATTTGATGCGTTGTTTGGTGGGATTGAGGACTG
GGTGAGCGTGATTAAGCCGCATGTTGGTGGTTTTGTGGTGAAGTAG