Gcaud8538.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8538.t1
Unique NameGcaud8538.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length89
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_793_length_17889_cov_7.435330contigNODE_793_length_17889_cov_7.435330:3442..4570 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8538Gcaud8538Gracilaria caudata M_176_S67 malegeneNODE_793_length_17889_cov_7.435330 3442..4570 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8538.t1Gcaud8538.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_793_length_17889_cov_7.435330 3442..4570 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8538.t1.CDS1Gcaud8538.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_793_length_17889_cov_7.435330 3442..3473 +
Gcaud8538.t1.CDS2Gcaud8538.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_793_length_17889_cov_7.435330 3579..3762 +
Gcaud8538.t1.CDS3Gcaud8538.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_793_length_17889_cov_7.435330 4424..4468 +
Gcaud8538.t1.CDS4Gcaud8538.t1.CDS4Gracilaria caudata M_176_S67 maleCDSNODE_793_length_17889_cov_7.435330 4565..4570 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8538.t1.exon1Gcaud8538.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_793_length_17889_cov_7.435330 3442..3473 +
Gcaud8538.t1.exon2Gcaud8538.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_793_length_17889_cov_7.435330 3579..3762 +
Gcaud8538.t1.exon3Gcaud8538.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_793_length_17889_cov_7.435330 4424..4468 +
Gcaud8538.t1.exon4Gcaud8538.t1.exon4Gracilaria caudata M_176_S67 maleexonNODE_793_length_17889_cov_7.435330 4565..4570 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8538.t1.intron1Gcaud8538.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_793_length_17889_cov_7.435330 3474..3578 +
Gcaud8538.t1.intron2Gcaud8538.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_793_length_17889_cov_7.435330 3763..4423 +
Gcaud8538.t1.intron3Gcaud8538.t1.intron3Gracilaria caudata M_176_S67 maleintronNODE_793_length_17889_cov_7.435330 4469..4564 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8538.t1.stop1Gcaud8538.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_793_length_17889_cov_7.435330 4568..4570 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8538.t1 ID=Gcaud8538.t1|Name=Gcaud8538.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=89bp
ICYWLLICYESCIKSSSQTLSLWLAYNLRPCTGSPPLMSLIVCLAILTIH
RHDTSVVATDAMKFPHCTNFPIVSSGGFAKHLSFVYEP*
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spliced messenger RNA

>Gcaud8538.t1 ID=Gcaud8538.t1|Name=Gcaud8538.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=267bp|location=Sequence derived from alignment at NODE_793_length_17889_cov_7.435330:3442..4570+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATCTGCTATTGGTTGCTTATCTGTTATGAAAGCTGTATAAAGTCTTCTTC
TCAGACGCTCAGTCTGTGGTTGGCTTACAATCTACGGCCTTGTACTGGAT
CACCGCCTCTGATGTCACTGATTGTTTGTCTTGCCATTTTGACAATTCAT
CGACATGATACCTCTGTCGTTGCTACTGATGCAATGAAGTTTCCACACTG
CACTAATTTTCCTATCGTGTCGTCCGGTGGATTCGCGAAACATCTATCTT
TCGTTTACGAACCATAG
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protein sequence of Gcaud8538.t1

>Gcaud8538.t1 ID=Gcaud8538.t1|Name=Gcaud8538.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=89bp
ICYWLLICYESCIKSSSQTLSLWLAYNLRPCTGSPPLMSLIVCLAILTIH
RHDTSVVATDAMKFPHCTNFPIVSSGGFAKHLSFVYEP*
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mRNA from alignment at NODE_793_length_17889_cov_7.435330:3442..4570+

Legend: polypeptideCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8538.t1 ID=Gcaud8538.t1|Name=Gcaud8538.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1129bp|location=Sequence derived from alignment at NODE_793_length_17889_cov_7.435330:3442..4570+ (Gracilaria caudata M_176_S67 male)
ATCTGCTATTGGTTGCTTATCTGTTATGAAAGGTTTGCTTCAATATCGCC
ATGTTACTCCACTACCACATCAGTGCCTGTAGGTGCCTCAAAGCATATCA
TTATGCAACTTCTAACCTTCTACTGAAACTATTTCAGCTGTATAAAGTCT
TCTTCTCAGACGCTCAGTCTGTGGTTGGCTTACAATCTACGGCCTTGTAC
TGGATCACCGCCTCTGATGTCACTGATTGTTTGTCTTGCCATTTTGACAA
TTCATCGACATGATACCTCTGTCGTTGCTACTGATGCAATGAAGTTTCCA
CACTGCACTAATTTTCCTATCGTGATCTGCGCATTTCCACCCACATCCTT
TCGTACTCACAGCCATTTCCTCGTCGACTGACCAGATTCCGTTGTTTTGT
TCTCATCCTGAATTGACTAGCAACTTGTGTCTTGTGTCTTGTGTCTCTCG
ATGACTGTTCATCCTTATCGATTTTGCTTTCTCTCCGCCTTCCCAGTACC
AATACGCAACATGCAAATTTATCTCGCCTTTGCCTTCTCTGACACATGTT
CCTCCTCCCCACTTCTTCGCTGGAATCCTTTCAACGTTCCTCAATACCTG
TACCATCTCCGTGCTTTCTTTATTTCGGTTTTGTAACCTTTCTAGGCTGA
CGCTGACGACGCTTTGTTTGTTTTACTTTCACTTTCTGTCGACATCTTTC
ATCTACGATACGTCTTCAACTTGCCTTCATTGCTTCAAGACCGGCGTATC
CACTGCATCTTCGCTTCTTGGTCATCTTTCCTCGTCATAACACGGTCTTG
GTAAATTTCATATCACTGCCAAAGCCCTAATCCTCCCTTTCCCACCCGTA
TCTCTCTTTTCACCTTGCGTCCTCCATTGTTGTACCAATCTTACCGTTCT
AAACCGCATCATCGTTGTCTCCGCAGTACTGACAACTTCATTGTTCATAT
TGGCGGCCATTGTTCTCAGTGCCTTGTCTTAGGTGTCGTCCGGTGGATTC
GCGAAACATCTATCTTTCGTTTACGAAGTATCAGTGCCGTACATATATCT
AAGACTTCGGTCTTTGCTACTGCAGAACTAACAATGTCAACATCTCTTTC
TCTTTCATTGCACTTTTGCGTAGCCATAG
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Coding sequence (CDS) from alignment at NODE_793_length_17889_cov_7.435330:3442..4570+

>Gcaud8538.t1 ID=Gcaud8538.t1|Name=Gcaud8538.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=267bp|location=Sequence derived from alignment at NODE_793_length_17889_cov_7.435330:3442..4570+ (Gracilaria caudata M_176_S67 male)
ATCTGCTATTGGTTGCTTATCTGTTATGAAAGCTGTATAAAGTCTTCTTC
TCAGACGCTCAGTCTGTGGTTGGCTTACAATCTACGGCCTTGTACTGGAT
CACCGCCTCTGATGTCACTGATTGTTTGTCTTGCCATTTTGACAATTCAT
CGACATGATACCTCTGTCGTTGCTACTGATGCAATGAAGTTTCCACACTG
CACTAATTTTCCTATCGTGTCGTCCGGTGGATTCGCGAAACATCTATCTT
TCGTTTACGAACCATAG
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