Gcaud2091.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2091.t1
Unique NameGcaud2091.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length613
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_781_length_18128_cov_4.694018contigNODE_781_length_18128_cov_4.694018:1569..3562 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3218.PP1S149_21V6.1
PFAMsArfGap
Max annot lvl35493|Streptophyta
KEGG koko:K12486
KEGG Pathwayko04144,map04144
GOsGO:0000003,GO:0001558,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0005829,GO:0006810,GO:0007275,GO:0008150,GO:0009791,GO:0009838,GO:0009908,GO:0009987,GO:0010227,GO:0012505,GO:0016043,GO:0016192,GO:0022414,GO:0022607,GO:0030135,GO:0030136,GO:0030276,GO:0030308,GO:0031410,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0034622,GO:0035459,GO:0035652,GO:0040008,GO:0043085,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043547,GO:0043933,GO:0044085,GO:0044093,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045926,GO:0048367,GO:0048437,GO:0048519,GO:0048523,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0051128,GO:0051179,GO:0051234,GO:0051336,GO:0051345,GO:0060858,GO:0061458,GO:0065003,GO:0065007,GO:0065009,GO:0071840,GO:0090567,GO:0090630,GO:0097708,GO:0098791,GO:0099402
Evalue2.01e-38
EggNOG OGsCOG5347@1|root,KOG0703@2759|Eukaryota,37KTR@33090|Viridiplantae,3G8CY@35493|Streptophyta
DescriptionADP-ribosylation factor GTPase-activating protein
COG categoryT
BRITEko00000,ko00001,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2091Gcaud2091Gracilaria caudata M_176_S67 malegeneNODE_781_length_18128_cov_4.694018 1569..3562 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2091.t1Gcaud2091.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_781_length_18128_cov_4.694018 1569..3562 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2091.t1.stop1Gcaud2091.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_781_length_18128_cov_4.694018 1569..1571 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2091.t1.CDS1Gcaud2091.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_781_length_18128_cov_4.694018 1569..3345 -
Gcaud2091.t1.CDS2Gcaud2091.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_781_length_18128_cov_4.694018 3501..3562 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2091.t1.exon1Gcaud2091.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_781_length_18128_cov_4.694018 1569..3345 -
Gcaud2091.t1.exon2Gcaud2091.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_781_length_18128_cov_4.694018 3501..3562 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2091.t1.intron1Gcaud2091.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_781_length_18128_cov_4.694018 3346..3500 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2091.t1.start1Gcaud2091.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_781_length_18128_cov_4.694018 3560..3562 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2091.t1 ID=Gcaud2091.t1|Name=Gcaud2091.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=613bp
MAERKNPQLDAEHQAILRKMMLLPENRTCADCKGPSPRWASTNLGIFICI
TCSGIHRKLGTHISQVRSITLDTWTPSQIQHFKKFGNAKASHYFEACLPP
DFRRPNSADSMPMERFIRDKYENKRYITIENGGLGGQSVSRNRPSRLAQR
PSPGALGPRPAQSVPASHQPAYDSTPTVRKTGMSSMSYGGRFSRPIKPTR
EPRKTTATAKSFASRTNTINPLQRANTLKQLLAMGFPQDVAVKAVGAGDG
DLQRSLDWVLQQDGQSMNQAPSTAPPRPIQKDLLDFGDPSPPTAASQTTQ
QRPVPKILATESLISSTAKDTSEVPKTVPTTNNGFADFANFGDFQQALPS
EVPSKQHSTSSNLSTSTTPKSATLTSSLANLYKKSPPNPTTIPSHIPPSS
KAASPPLFPNSLHTVGKANIGSMHANEDSLGLTTFGSLSPQNLRLRGKTV
PSMRLSEAKQHAGVQVPQTLPSKTEPPPPPPPPEHLMFPSTLDNQPPPPS
PKVESSMNQTSSLQNHGKTHEGEQSTSSSNVEAKEEPPKDDSNEKEEQEK
KEEEEEEDPFAALSMMALSRATSAQKKRKDKKSSSLPKELEPSSSKGVEV
VESSINLDELLS*
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spliced messenger RNA

>Gcaud2091.t1 ID=Gcaud2091.t1|Name=Gcaud2091.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1839bp|location=Sequence derived from alignment at NODE_781_length_18128_cov_4.694018:1569..3562- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGAAAGAAAGAACCCTCAGCTTGATGCTGAGCATCAAGCAATTCT
CCGCAAGATGATGTTGCTTCCGGAAAACAGAACATGCGCTGATTGCAAGG
GTCCATCCCCTAGATGGGCTTCTACAAATCTCGGTATCTTCATCTGTATC
ACGTGTAGTGGCATCCACAGGAAACTCGGTACGCACATTTCTCAGGTGAG
ATCCATCACACTTGACACATGGACCCCAAGTCAAATACAACACTTCAAGA
AGTTTGGAAACGCCAAGGCCTCTCATTACTTCGAAGCATGTCTCCCGCCG
GACTTTCGGCGTCCGAACTCCGCAGATTCAATGCCAATGGAGCGATTCAT
CCGCGATAAGTACGAAAACAAGCGGTACATAACTATAGAGAACGGCGGGT
TAGGAGGCCAATCCGTCAGTCGAAATCGACCCTCACGCTTAGCGCAGCGT
CCGAGTCCTGGCGCATTAGGTCCGCGCCCTGCACAGTCGGTGCCTGCTTC
GCACCAACCTGCATATGACTCCACTCCCACAGTTCGAAAAACTGGGATGT
CGTCAATGAGTTACGGCGGTCGCTTTTCACGTCCGATTAAACCGACGCGG
GAACCTCGGAAGACCACTGCGACTGCGAAATCATTTGCTTCACGCACAAA
TACCATCAATCCGCTCCAGCGAGCAAACACATTGAAACAACTTTTGGCAA
TGGGCTTTCCTCAAGATGTAGCTGTAAAAGCTGTTGGGGCTGGAGATGGG
GACCTTCAGAGATCCTTAGATTGGGTCCTGCAGCAAGATGGACAATCTAT
GAATCAAGCACCAAGCACCGCACCACCGCGACCGATTCAGAAGGATCTGC
TTGATTTTGGTGACCCATCACCGCCGACGGCAGCTTCACAAACCACTCAA
CAACGGCCCGTCCCCAAGATATTGGCCACTGAATCGCTTATTTCTTCAAC
TGCAAAGGACACGTCGGAAGTTCCGAAGACGGTACCAACAACAAACAATG
GCTTTGCTGACTTTGCTAACTTCGGCGATTTTCAGCAAGCGCTTCCTTCG
GAAGTCCCGTCAAAACAACATAGTACCTCTTCCAATTTGTCTACATCTAC
CACCCCGAAAAGTGCAACACTTACGTCTTCTCTAGCCAACTTGTACAAGA
AGAGCCCTCCGAACCCGACCACAATACCTTCCCACATCCCGCCTTCATCG
AAAGCTGCGAGCCCACCTTTGTTCCCTAATTCATTGCACACGGTCGGTAA
GGCAAACATAGGGAGTATGCACGCAAACGAGGATAGCTTGGGGCTCACTA
CATTTGGATCGCTGTCTCCTCAAAATCTGAGGTTACGTGGAAAGACAGTC
CCCTCTATGCGTTTGTCTGAAGCAAAGCAGCATGCCGGAGTTCAGGTACC
CCAAACGTTGCCCTCTAAAACTGAGCCACCTCCACCGCCCCCACCTCCTG
AACATCTGATGTTTCCAAGCACACTAGATAATCAACCACCACCACCCTCG
CCAAAAGTGGAAAGCTCTATGAATCAGACTTCTTCCCTTCAAAACCATGG
AAAGACTCATGAAGGAGAGCAGAGTACCTCAAGTTCGAATGTAGAGGCCA
AAGAAGAGCCTCCCAAGGATGATTCAAACGAAAAAGAAGAACAGGAAAAG
AAAGAGGAGGAGGAAGAGGAGGATCCATTTGCCGCATTGTCGATGATGGC
TCTGAGTAGAGCCACATCGGCTCAAAAGAAAAGGAAGGATAAGAAGTCTT
CGTCTTTACCAAAAGAATTGGAGCCAAGTTCATCAAAGGGCGTAGAGGTT
GTGGAAAGTAGCATTAATCTAGACGAACTATTGAGTTAG
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protein sequence of Gcaud2091.t1

>Gcaud2091.t1 ID=Gcaud2091.t1|Name=Gcaud2091.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=613bp
MAERKNPQLDAEHQAILRKMMLLPENRTCADCKGPSPRWASTNLGIFICI
TCSGIHRKLGTHISQVRSITLDTWTPSQIQHFKKFGNAKASHYFEACLPP
DFRRPNSADSMPMERFIRDKYENKRYITIENGGLGGQSVSRNRPSRLAQR
PSPGALGPRPAQSVPASHQPAYDSTPTVRKTGMSSMSYGGRFSRPIKPTR
EPRKTTATAKSFASRTNTINPLQRANTLKQLLAMGFPQDVAVKAVGAGDG
DLQRSLDWVLQQDGQSMNQAPSTAPPRPIQKDLLDFGDPSPPTAASQTTQ
QRPVPKILATESLISSTAKDTSEVPKTVPTTNNGFADFANFGDFQQALPS
EVPSKQHSTSSNLSTSTTPKSATLTSSLANLYKKSPPNPTTIPSHIPPSS
KAASPPLFPNSLHTVGKANIGSMHANEDSLGLTTFGSLSPQNLRLRGKTV
PSMRLSEAKQHAGVQVPQTLPSKTEPPPPPPPPEHLMFPSTLDNQPPPPS
PKVESSMNQTSSLQNHGKTHEGEQSTSSSNVEAKEEPPKDDSNEKEEQEK
KEEEEEEDPFAALSMMALSRATSAQKKRKDKKSSSLPKELEPSSSKGVEV
VESSINLDELLS*
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mRNA from alignment at NODE_781_length_18128_cov_4.694018:1569..3562-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2091.t1 ID=Gcaud2091.t1|Name=Gcaud2091.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1994bp|location=Sequence derived from alignment at NODE_781_length_18128_cov_4.694018:1569..3562- (Gracilaria caudata M_176_S67 male)
ATGGCCGAAAGAAAGAACCCTCAGCTTGATGCTGAGCATCAAGCAATTCT
CCGCAAGATGATGTACGTTTTCTTATCTACACCTCCGTAATACTTCTTCC
CAGATATCGCGTCACGTTGTTCAGAGCATTAAAATTGGGTCATACTCGTG
ATTTTCCCTCGTGAATAGCGTATGCTGTCGAAACCAAGTTACTGACACTA
TTACGTTCAACGTCCAGGTTGCTTCCGGAAAACAGAACATGCGCTGATTG
CAAGGGTCCATCCCCTAGATGGGCTTCTACAAATCTCGGTATCTTCATCT
GTATCACGTGTAGTGGCATCCACAGGAAACTCGGTACGCACATTTCTCAG
GTGAGATCCATCACACTTGACACATGGACCCCAAGTCAAATACAACACTT
CAAGAAGTTTGGAAACGCCAAGGCCTCTCATTACTTCGAAGCATGTCTCC
CGCCGGACTTTCGGCGTCCGAACTCCGCAGATTCAATGCCAATGGAGCGA
TTCATCCGCGATAAGTACGAAAACAAGCGGTACATAACTATAGAGAACGG
CGGGTTAGGAGGCCAATCCGTCAGTCGAAATCGACCCTCACGCTTAGCGC
AGCGTCCGAGTCCTGGCGCATTAGGTCCGCGCCCTGCACAGTCGGTGCCT
GCTTCGCACCAACCTGCATATGACTCCACTCCCACAGTTCGAAAAACTGG
GATGTCGTCAATGAGTTACGGCGGTCGCTTTTCACGTCCGATTAAACCGA
CGCGGGAACCTCGGAAGACCACTGCGACTGCGAAATCATTTGCTTCACGC
ACAAATACCATCAATCCGCTCCAGCGAGCAAACACATTGAAACAACTTTT
GGCAATGGGCTTTCCTCAAGATGTAGCTGTAAAAGCTGTTGGGGCTGGAG
ATGGGGACCTTCAGAGATCCTTAGATTGGGTCCTGCAGCAAGATGGACAA
TCTATGAATCAAGCACCAAGCACCGCACCACCGCGACCGATTCAGAAGGA
TCTGCTTGATTTTGGTGACCCATCACCGCCGACGGCAGCTTCACAAACCA
CTCAACAACGGCCCGTCCCCAAGATATTGGCCACTGAATCGCTTATTTCT
TCAACTGCAAAGGACACGTCGGAAGTTCCGAAGACGGTACCAACAACAAA
CAATGGCTTTGCTGACTTTGCTAACTTCGGCGATTTTCAGCAAGCGCTTC
CTTCGGAAGTCCCGTCAAAACAACATAGTACCTCTTCCAATTTGTCTACA
TCTACCACCCCGAAAAGTGCAACACTTACGTCTTCTCTAGCCAACTTGTA
CAAGAAGAGCCCTCCGAACCCGACCACAATACCTTCCCACATCCCGCCTT
CATCGAAAGCTGCGAGCCCACCTTTGTTCCCTAATTCATTGCACACGGTC
GGTAAGGCAAACATAGGGAGTATGCACGCAAACGAGGATAGCTTGGGGCT
CACTACATTTGGATCGCTGTCTCCTCAAAATCTGAGGTTACGTGGAAAGA
CAGTCCCCTCTATGCGTTTGTCTGAAGCAAAGCAGCATGCCGGAGTTCAG
GTACCCCAAACGTTGCCCTCTAAAACTGAGCCACCTCCACCGCCCCCACC
TCCTGAACATCTGATGTTTCCAAGCACACTAGATAATCAACCACCACCAC
CCTCGCCAAAAGTGGAAAGCTCTATGAATCAGACTTCTTCCCTTCAAAAC
CATGGAAAGACTCATGAAGGAGAGCAGAGTACCTCAAGTTCGAATGTAGA
GGCCAAAGAAGAGCCTCCCAAGGATGATTCAAACGAAAAAGAAGAACAGG
AAAAGAAAGAGGAGGAGGAAGAGGAGGATCCATTTGCCGCATTGTCGATG
ATGGCTCTGAGTAGAGCCACATCGGCTCAAAAGAAAAGGAAGGATAAGAA
GTCTTCGTCTTTACCAAAAGAATTGGAGCCAAGTTCATCAAAGGGCGTAG
AGGTTGTGGAAAGTAGCATTAATCTAGACGAACTATTGAGTTAG
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Coding sequence (CDS) from alignment at NODE_781_length_18128_cov_4.694018:1569..3562-

>Gcaud2091.t1 ID=Gcaud2091.t1|Name=Gcaud2091.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1839bp|location=Sequence derived from alignment at NODE_781_length_18128_cov_4.694018:1569..3562- (Gracilaria caudata M_176_S67 male)
ATGGCCGAAAGAAAGAACCCTCAGCTTGATGCTGAGCATCAAGCAATTCT
CCGCAAGATGATGTTGCTTCCGGAAAACAGAACATGCGCTGATTGCAAGG
GTCCATCCCCTAGATGGGCTTCTACAAATCTCGGTATCTTCATCTGTATC
ACGTGTAGTGGCATCCACAGGAAACTCGGTACGCACATTTCTCAGGTGAG
ATCCATCACACTTGACACATGGACCCCAAGTCAAATACAACACTTCAAGA
AGTTTGGAAACGCCAAGGCCTCTCATTACTTCGAAGCATGTCTCCCGCCG
GACTTTCGGCGTCCGAACTCCGCAGATTCAATGCCAATGGAGCGATTCAT
CCGCGATAAGTACGAAAACAAGCGGTACATAACTATAGAGAACGGCGGGT
TAGGAGGCCAATCCGTCAGTCGAAATCGACCCTCACGCTTAGCGCAGCGT
CCGAGTCCTGGCGCATTAGGTCCGCGCCCTGCACAGTCGGTGCCTGCTTC
GCACCAACCTGCATATGACTCCACTCCCACAGTTCGAAAAACTGGGATGT
CGTCAATGAGTTACGGCGGTCGCTTTTCACGTCCGATTAAACCGACGCGG
GAACCTCGGAAGACCACTGCGACTGCGAAATCATTTGCTTCACGCACAAA
TACCATCAATCCGCTCCAGCGAGCAAACACATTGAAACAACTTTTGGCAA
TGGGCTTTCCTCAAGATGTAGCTGTAAAAGCTGTTGGGGCTGGAGATGGG
GACCTTCAGAGATCCTTAGATTGGGTCCTGCAGCAAGATGGACAATCTAT
GAATCAAGCACCAAGCACCGCACCACCGCGACCGATTCAGAAGGATCTGC
TTGATTTTGGTGACCCATCACCGCCGACGGCAGCTTCACAAACCACTCAA
CAACGGCCCGTCCCCAAGATATTGGCCACTGAATCGCTTATTTCTTCAAC
TGCAAAGGACACGTCGGAAGTTCCGAAGACGGTACCAACAACAAACAATG
GCTTTGCTGACTTTGCTAACTTCGGCGATTTTCAGCAAGCGCTTCCTTCG
GAAGTCCCGTCAAAACAACATAGTACCTCTTCCAATTTGTCTACATCTAC
CACCCCGAAAAGTGCAACACTTACGTCTTCTCTAGCCAACTTGTACAAGA
AGAGCCCTCCGAACCCGACCACAATACCTTCCCACATCCCGCCTTCATCG
AAAGCTGCGAGCCCACCTTTGTTCCCTAATTCATTGCACACGGTCGGTAA
GGCAAACATAGGGAGTATGCACGCAAACGAGGATAGCTTGGGGCTCACTA
CATTTGGATCGCTGTCTCCTCAAAATCTGAGGTTACGTGGAAAGACAGTC
CCCTCTATGCGTTTGTCTGAAGCAAAGCAGCATGCCGGAGTTCAGGTACC
CCAAACGTTGCCCTCTAAAACTGAGCCACCTCCACCGCCCCCACCTCCTG
AACATCTGATGTTTCCAAGCACACTAGATAATCAACCACCACCACCCTCG
CCAAAAGTGGAAAGCTCTATGAATCAGACTTCTTCCCTTCAAAACCATGG
AAAGACTCATGAAGGAGAGCAGAGTACCTCAAGTTCGAATGTAGAGGCCA
AAGAAGAGCCTCCCAAGGATGATTCAAACGAAAAAGAAGAACAGGAAAAG
AAAGAGGAGGAGGAAGAGGAGGATCCATTTGCCGCATTGTCGATGATGGC
TCTGAGTAGAGCCACATCGGCTCAAAAGAAAAGGAAGGATAAGAAGTCTT
CGTCTTTACCAAAAGAATTGGAGCCAAGTTCATCAAAGGGCGTAGAGGTT
GTGGAAAGTAGCATTAATCTAGACGAACTATTGAGTTAG
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