Gcaud9587.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud9587.t1
Unique NameGcaud9587.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length99
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_749_length_18675_cov_4.529918contigNODE_749_length_18675_cov_4.529918:2852..3148 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9587Gcaud9587Gracilaria caudata M_176_S67 malegeneNODE_749_length_18675_cov_4.529918 2852..3148 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9587.t1.stop1Gcaud9587.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_749_length_18675_cov_4.529918 2852..2854 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9587.t1.CDS1Gcaud9587.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_749_length_18675_cov_4.529918 2852..3148 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9587.t1.exon1Gcaud9587.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_749_length_18675_cov_4.529918 2852..3148 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9587.t1.start1Gcaud9587.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_749_length_18675_cov_4.529918 3146..3148 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9587.t1Gcaud9587.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_749_length_18675_cov_4.529918 2852..3148 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud9587.t1 ID=Gcaud9587.t1|Name=Gcaud9587.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=99bp
MARLFRVPATLLLTLFALAALFVPLHAMDVELEPSAEEELLESSVEPELT
SSEREMLSLLRKLDLVVRRVVRAAAMMEEEELMMSPEASAEGLEEMEM*
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spliced messenger RNA

>Gcaud9587.t1 ID=Gcaud9587.t1|Name=Gcaud9587.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=297bp|location=Sequence derived from alignment at NODE_749_length_18675_cov_4.529918:2852..3148- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCGCCTTTTCCGAGTGCCTGCCACGCTTTTGCTTACTCTGTTCGC
TCTAGCAGCTCTGTTTGTACCGCTTCATGCCATGGATGTTGAATTGGAAC
CATCTGCTGAGGAAGAACTGCTCGAGAGCTCTGTTGAACCGGAGCTAACC
TCGTCGGAGCGTGAAATGCTTTCCCTTCTGCGAAAGCTTGACCTCGTAGT
GAGGAGAGTTGTGCGTGCCGCTGCCATGATGGAAGAGGAAGAGCTCATGA
TGAGCCCCGAAGCTTCAGCTGAAGGCTTGGAAGAAATGGAAATGTAA
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protein sequence of Gcaud9587.t1

>Gcaud9587.t1 ID=Gcaud9587.t1|Name=Gcaud9587.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=99bp
MARLFRVPATLLLTLFALAALFVPLHAMDVELEPSAEEELLESSVEPELT
SSEREMLSLLRKLDLVVRRVVRAAAMMEEEELMMSPEASAEGLEEMEM*
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mRNA from alignment at NODE_749_length_18675_cov_4.529918:2852..3148-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud9587.t1 ID=Gcaud9587.t1|Name=Gcaud9587.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=297bp|location=Sequence derived from alignment at NODE_749_length_18675_cov_4.529918:2852..3148- (Gracilaria caudata M_176_S67 male)
ATGGCTCGCCTTTTCCGAGTGCCTGCCACGCTTTTGCTTACTCTGTTCGC
TCTAGCAGCTCTGTTTGTACCGCTTCATGCCATGGATGTTGAATTGGAAC
CATCTGCTGAGGAAGAACTGCTCGAGAGCTCTGTTGAACCGGAGCTAACC
TCGTCGGAGCGTGAAATGCTTTCCCTTCTGCGAAAGCTTGACCTCGTAGT
GAGGAGAGTTGTGCGTGCCGCTGCCATGATGGAAGAGGAAGAGCTCATGA
TGAGCCCCGAAGCTTCAGCTGAAGGCTTGGAAGAAATGGAAATGTAA
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Coding sequence (CDS) from alignment at NODE_749_length_18675_cov_4.529918:2852..3148-

>Gcaud9587.t1 ID=Gcaud9587.t1|Name=Gcaud9587.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=297bp|location=Sequence derived from alignment at NODE_749_length_18675_cov_4.529918:2852..3148- (Gracilaria caudata M_176_S67 male)
ATGGCTCGCCTTTTCCGAGTGCCTGCCACGCTTTTGCTTACTCTGTTCGC
TCTAGCAGCTCTGTTTGTACCGCTTCATGCCATGGATGTTGAATTGGAAC
CATCTGCTGAGGAAGAACTGCTCGAGAGCTCTGTTGAACCGGAGCTAACC
TCGTCGGAGCGTGAAATGCTTTCCCTTCTGCGAAAGCTTGACCTCGTAGT
GAGGAGAGTTGTGCGTGCCGCTGCCATGATGGAAGAGGAAGAGCTCATGA
TGAGCCCCGAAGCTTCAGCTGAAGGCTTGGAAGAAATGGAAATGTAA
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