Gcaud9589.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud9589.t1
Unique Name	Gcaud9589.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	274

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_749_length_18675_cov_4.529918	contig	NODE_749_length_18675_cov_4.529918:8284..9105 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707068.1
PFAMs	DUF2407,DUF2407_C,ubiquitin
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K22063
Evalue	2.6e-21
EggNOG OGs	2CYZ9@1\|root,2S7DP@2759\|Eukaryota
Description	DUF2407 C-terminal domain
COG category	S
BRITE	ko00000,ko03029

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9589	Gcaud9589	Gracilaria caudata M_176_S67 male	gene	NODE_749_length_18675_cov_4.529918 8284..9105 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9589.t1.stop1	Gcaud9589.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_749_length_18675_cov_4.529918 8284..8286 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9589.t1.CDS1	Gcaud9589.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_749_length_18675_cov_4.529918 8284..9105 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9589.t1.exon1	Gcaud9589.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_749_length_18675_cov_4.529918 8284..9105 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9589.t1.start1	Gcaud9589.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_749_length_18675_cov_4.529918 9103..9105 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9589.t1	Gcaud9589.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_749_length_18675_cov_4.529918 8284..9105 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_749_length_18675_cov_4.529918:8284..9105-
coding sequence from alignment at NODE_749_length_18675_cov_4.529918:8284..9105-

mRNA sequence

>Gcaud9589.t1 ID=Gcaud9589.t1|Name=Gcaud9589.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=274bp
MPDNEEAEKPAVQHVRVGLPGGTVHDFELPLDATLSDVANRIVEAERLDE
HAVRIRLISAGKLFTDFSLPVRDIVGEGDFLHCAVSQRPSEADDSQERSE
NEGEAQVPDGNIVFEAIDTHRGVSVIIPERSDIASDRLIAAGFSAEETRL
ILRHFQILQRHARRGRQSVGDIEEGGQRAEVDVDDNGDLIARVRRPRTEP
RSMLTSGVEGTNGDFLMGCIFGYLLGIIVLVLLLDNSATRRWRVGLIAGV
ATNCAFGVLRTSLRLNSSSFSAT*

spliced messenger RNA

>Gcaud9589.t1 ID=Gcaud9589.t1|Name=Gcaud9589.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=822bp|location=Sequence derived from alignment at NODE_749_length_18675_cov_4.529918:8284..9105- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCAGACAATGAGGAAGCCGAAAAGCCTGCCGTCCAACATGTGCGCGT
TGGCCTTCCGGGCGGCACAGTCCACGACTTCGAACTACCGTTGGATGCAA
CCTTGTCGGACGTAGCGAACCGCATTGTGGAAGCCGAACGCCTGGACGAG
CATGCGGTCAGAATTCGACTCATAAGCGCTGGGAAGCTTTTCACAGACTT
TTCACTTCCAGTGCGCGATATCGTTGGTGAAGGAGACTTCCTCCATTGCG
CTGTGTCGCAAAGACCTAGTGAGGCAGACGATTCTCAAGAGCGAAGCGAA
AATGAAGGCGAAGCGCAAGTTCCTGATGGGAACATAGTATTCGAAGCGAT
CGATACTCACCGTGGTGTGAGTGTTATTATTCCAGAGCGCTCTGACATTG
CTTCGGACAGACTCATTGCAGCCGGTTTCTCTGCGGAAGAAACTCGCTTG
ATACTTCGTCACTTTCAGATTCTTCAGCGTCATGCGAGGCGCGGAAGACA
GTCTGTCGGAGACATCGAAGAAGGCGGTCAACGGGCTGAAGTAGACGTTG
ATGACAATGGTGACTTAATTGCAAGAGTGAGACGTCCTCGTACGGAACCG
CGGTCAATGTTGACATCAGGGGTAGAAGGGACGAATGGGGATTTTCTTAT
GGGGTGTATATTCGGATATCTGCTCGGTATTATCGTGCTTGTACTTCTTC
TGGACAACAGCGCAACACGACGCTGGCGTGTTGGGCTGATTGCTGGCGTG
GCGACCAATTGTGCCTTTGGTGTTCTCCGAACCAGCCTGCGTCTCAATAG
CTCCTCCTTCTCAGCAACGTAA

protein sequence of Gcaud9589.t1

>Gcaud9589.t1 ID=Gcaud9589.t1|Name=Gcaud9589.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=274bp
MPDNEEAEKPAVQHVRVGLPGGTVHDFELPLDATLSDVANRIVEAERLDE
HAVRIRLISAGKLFTDFSLPVRDIVGEGDFLHCAVSQRPSEADDSQERSE
NEGEAQVPDGNIVFEAIDTHRGVSVIIPERSDIASDRLIAAGFSAEETRL
ILRHFQILQRHARRGRQSVGDIEEGGQRAEVDVDDNGDLIARVRRPRTEP
RSMLTSGVEGTNGDFLMGCIFGYLLGIIVLVLLLDNSATRRWRVGLIAGV
ATNCAFGVLRTSLRLNSSSFSAT*

mRNA from alignment at NODE_749_length_18675_cov_4.529918:8284..9105-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud9589.t1 ID=Gcaud9589.t1|Name=Gcaud9589.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=822bp|location=Sequence derived from alignment at NODE_749_length_18675_cov_4.529918:8284..9105- (Gracilaria caudata M_176_S67 male)
ATGCCAGACAATGAGGAAGCCGAAAAGCCTGCCGTCCAACATGTGCGCGT
TGGCCTTCCGGGCGGCACAGTCCACGACTTCGAACTACCGTTGGATGCAA
CCTTGTCGGACGTAGCGAACCGCATTGTGGAAGCCGAACGCCTGGACGAG
CATGCGGTCAGAATTCGACTCATAAGCGCTGGGAAGCTTTTCACAGACTT
TTCACTTCCAGTGCGCGATATCGTTGGTGAAGGAGACTTCCTCCATTGCG
CTGTGTCGCAAAGACCTAGTGAGGCAGACGATTCTCAAGAGCGAAGCGAA
AATGAAGGCGAAGCGCAAGTTCCTGATGGGAACATAGTATTCGAAGCGAT
CGATACTCACCGTGGTGTGAGTGTTATTATTCCAGAGCGCTCTGACATTG
CTTCGGACAGACTCATTGCAGCCGGTTTCTCTGCGGAAGAAACTCGCTTG
ATACTTCGTCACTTTCAGATTCTTCAGCGTCATGCGAGGCGCGGAAGACA
GTCTGTCGGAGACATCGAAGAAGGCGGTCAACGGGCTGAAGTAGACGTTG
ATGACAATGGTGACTTAATTGCAAGAGTGAGACGTCCTCGTACGGAACCG
CGGTCAATGTTGACATCAGGGGTAGAAGGGACGAATGGGGATTTTCTTAT
GGGGTGTATATTCGGATATCTGCTCGGTATTATCGTGCTTGTACTTCTTC
TGGACAACAGCGCAACACGACGCTGGCGTGTTGGGCTGATTGCTGGCGTG
GCGACCAATTGTGCCTTTGGTGTTCTCCGAACCAGCCTGCGTCTCAATAG
CTCCTCCTTCTCAGCAACGTAA

Coding sequence (CDS) from alignment at NODE_749_length_18675_cov_4.529918:8284..9105-

>Gcaud9589.t1 ID=Gcaud9589.t1|Name=Gcaud9589.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=822bp|location=Sequence derived from alignment at NODE_749_length_18675_cov_4.529918:8284..9105- (Gracilaria caudata M_176_S67 male)
ATGCCAGACAATGAGGAAGCCGAAAAGCCTGCCGTCCAACATGTGCGCGT
TGGCCTTCCGGGCGGCACAGTCCACGACTTCGAACTACCGTTGGATGCAA
CCTTGTCGGACGTAGCGAACCGCATTGTGGAAGCCGAACGCCTGGACGAG
CATGCGGTCAGAATTCGACTCATAAGCGCTGGGAAGCTTTTCACAGACTT
TTCACTTCCAGTGCGCGATATCGTTGGTGAAGGAGACTTCCTCCATTGCG
CTGTGTCGCAAAGACCTAGTGAGGCAGACGATTCTCAAGAGCGAAGCGAA
AATGAAGGCGAAGCGCAAGTTCCTGATGGGAACATAGTATTCGAAGCGAT
CGATACTCACCGTGGTGTGAGTGTTATTATTCCAGAGCGCTCTGACATTG
CTTCGGACAGACTCATTGCAGCCGGTTTCTCTGCGGAAGAAACTCGCTTG
ATACTTCGTCACTTTCAGATTCTTCAGCGTCATGCGAGGCGCGGAAGACA
GTCTGTCGGAGACATCGAAGAAGGCGGTCAACGGGCTGAAGTAGACGTTG
ATGACAATGGTGACTTAATTGCAAGAGTGAGACGTCCTCGTACGGAACCG
CGGTCAATGTTGACATCAGGGGTAGAAGGGACGAATGGGGATTTTCTTAT
GGGGTGTATATTCGGATATCTGCTCGGTATTATCGTGCTTGTACTTCTTC
TGGACAACAGCGCAACACGACGCTGGCGTGTTGGGCTGATTGCTGGCGTG
GCGACCAATTGTGCCTTTGGTGTTCTCCGAACCAGCCTGCGTCTCAATAG
CTCCTCCTTCTCAGCAACGTAA