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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 1123020.AUIE01000006_gene4026 |
| Preferred name | frr |
| PFAMs | RRF |
| Max annot lvl | 1236|Gammaproteobacteria |
| KEGG ko | ko:K02838 |
| GOs | GO:0002181,GO:0002184,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006415,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0019538,GO:0022411,GO:0032984,GO:0034641,GO:0034645,GO:0043021,GO:0043023,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0071704,GO:0071840,GO:1901564,GO:1901566,GO:1901576 |
| Evalue | 7.46e-34 |
| EggNOG OGs | COG0233@1|root,COG0233@2|Bacteria,1N66T@1224|Proteobacteria,1RN75@1236|Gammaproteobacteria,1YEGZ@136841|Pseudomonas aeruginosa group |
| Description | Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another |
| COG category | J |
| BRITE | ko00000,ko03012 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud9594.t1.start1 | Gcaud9594.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_749_length_18675_cov_4.529918 16916..16918 + |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud9594.t1.stop1 | Gcaud9594.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_749_length_18675_cov_4.529918 17695..17697 + |
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud9594.t1 ID=Gcaud9594.t1|Name=Gcaud9594.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=173bp
MKKTLDALQNSYSRLRVDGATPAILDDVSVKAYGTATPLKNIAQVGVRDG
RALIVQVFDESTTGAVEKAIRSAGLNLNPVRESDGKLKVPVPKSSKQTRD
SMKDNALKEAEAAKVATRMIRRKAMEEVKGLRGEVGKDDINKIEKGVQKL
TDRFIGDITEVQRNKKMLLSRA* back to topspliced messenger RNA >Gcaud9594.t1 ID=Gcaud9594.t1|Name=Gcaud9594.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=519bp|location=Sequence derived from alignment at NODE_749_length_18675_cov_4.529918:16916..17697+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGAAGAAAACCCTCGATGCGCTACAGAATAGTTATTCAAGGCTTCGTGT
TGATGGAGCAACTCCAGCAATCTTGGACGATGTTTCTGTGAAAGCGTATG
GAACTGCAACGCCATTGAAGAACATTGCACAAGTAGGAGTGCGCGATGGC
CGCGCTTTGATCGTCCAAGTGTTTGATGAAAGTACAACAGGTGCAGTGGA
AAAAGCCATTAGGTCTGCAGGACTAAACCTGAATCCTGTAAGGGAATCGG
ATGGCAAGCTTAAAGTACCAGTGCCTAAATCTTCAAAGCAGACCCGTGAC
TCCATGAAAGATAACGCTCTGAAGGAAGCAGAGGCCGCAAAGGTTGCCAC
GCGCATGATTCGAAGAAAGGCCATGGAAGAAGTGAAGGGCCTTCGGGGTG
AGGTCGGTAAGGACGATATCAATAAGATAGAAAAGGGAGTACAGAAATTG
ACAGATCGTTTCATTGGCGACATAACCGAAGTGCAAAGAAATAAGAAAAT
GCTTTTGTCCAGAGCCTAG back to topprotein sequence of Gcaud9594.t1 >Gcaud9594.t1 ID=Gcaud9594.t1|Name=Gcaud9594.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=173bp
MKKTLDALQNSYSRLRVDGATPAILDDVSVKAYGTATPLKNIAQVGVRDG
RALIVQVFDESTTGAVEKAIRSAGLNLNPVRESDGKLKVPVPKSSKQTRD
SMKDNALKEAEAAKVATRMIRRKAMEEVKGLRGEVGKDDINKIEKGVQKL
TDRFIGDITEVQRNKKMLLSRA* back to topmRNA from alignment at NODE_749_length_18675_cov_4.529918:16916..17697+ Legend: polypeptidestart_codonCDSexonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud9594.t1 ID=Gcaud9594.t1|Name=Gcaud9594.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=782bp|location=Sequence derived from alignment at NODE_749_length_18675_cov_4.529918:16916..17697+ (Gracilaria caudata M_176_S67 male)
ATGAAGAAAACCCTCGATGCGCTACAGAATAGTTATTCAAGGCTTCGTGT
TGATGGAGCAACTCCAGCAATCTTGGACGGTATGTAAATCTTCTTATCGT
GCGGTTCATTTAGCGGCCAAATATACTGAGCATCTTAGTGTTGTCATAGA
TGTTTCTGTGAAAGCGTATGGAACTGCAACGCCATTGAAGAACATTGCAC
AAGTAGGAGTGCGCGATGGCCGCGCTTTGATCGTCCAAGTGTTTGATGAA
AGTACAACAGGTGCAGTGGAAAAAGCCATTAGGTCTGCAGGACTAAACCT
GAATCCTGTAAGGGAATCGGATGGCAAGCTTAAAGTACCAGTGCCTAAAT
CTTCAAAGCAGACCCGTGACTCCATGAAAGATGTAAGTAATTCATTGCCT
TTTGCCGTTTCTTTTCAGTCACACCTCGGAGTACGGCCCACTAATGTATT
GTTATGCCCATAGAACGCTCTGAAGGAAGCAGAGGCCGCAAAGGTTGCCA
CGCGCATGATTCGAAGAAAGGCCATGGAAGAAGTGAAGGGCCTTCGGGGT
GAGGTCGGTAAGGACGATATCAATAAGATAGAAAAGGGAGTACAGAAATT
GACAGATCGTTTCATTGGCGACATAACCGAAGTGCAAAGAAATAAGGTAC
GTGCTATTGAGGCGCTTCAAGCCCCGCATTGAGACCCTTCTGCAGAATCT
GAATTCTTCAATAGTTGCAGTCACAATCAATCACAAGCATTTGAACTTCC
CAACACAGAAAATGCTTTTGTCCAGAGCCTAG back to topCoding sequence (CDS) from alignment at NODE_749_length_18675_cov_4.529918:16916..17697+ >Gcaud9594.t1 ID=Gcaud9594.t1|Name=Gcaud9594.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=519bp|location=Sequence derived from alignment at NODE_749_length_18675_cov_4.529918:16916..17697+ (Gracilaria caudata M_176_S67 male)
ATGAAGAAAACCCTCGATGCGCTACAGAATAGTTATTCAAGGCTTCGTGT
TGATGGAGCAACTCCAGCAATCTTGGACGATGTTTCTGTGAAAGCGTATG
GAACTGCAACGCCATTGAAGAACATTGCACAAGTAGGAGTGCGCGATGGC
CGCGCTTTGATCGTCCAAGTGTTTGATGAAAGTACAACAGGTGCAGTGGA
AAAAGCCATTAGGTCTGCAGGACTAAACCTGAATCCTGTAAGGGAATCGG
ATGGCAAGCTTAAAGTACCAGTGCCTAAATCTTCAAAGCAGACCCGTGAC
TCCATGAAAGATAACGCTCTGAAGGAAGCAGAGGCCGCAAAGGTTGCCAC
GCGCATGATTCGAAGAAAGGCCATGGAAGAAGTGAAGGGCCTTCGGGGTG
AGGTCGGTAAGGACGATATCAATAAGATAGAAAAGGGAGTACAGAAATTG
ACAGATCGTTTCATTGGCGACATAACCGAAGTGCAAAGAAATAAGAAAAT
GCTTTTGTCCAGAGCCTAG back to top
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