Gcaud9592.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud9592.t1
Unique NameGcaud9592.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length341
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_749_length_18675_cov_4.529918contigNODE_749_length_18675_cov_4.529918:14420..15442 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704794.1
Preferred nameRAD51
PFAMsHHH_5,Rad51
Max annot lvl2759|Eukaryota
KEGG koko:K04482,ko:K14303
KEGG TC1.I.1
KEGG Pathwayko03013,ko03440,ko03460,ko05200,ko05212,map03013,map03440,map03460,map05200,map05212
KEGG ModuleM00427
GOsGO:0000003,GO:0000018,GO:0000150,GO:0000166,GO:0000217,GO:0000228,GO:0000278,GO:0000280,GO:0000400,GO:0000709,GO:0000722,GO:0000723,GO:0000724,GO:0000725,GO:0000730,GO:0000775,GO:0000781,GO:0000784,GO:0000785,GO:0000790,GO:0000793,GO:0000794,GO:0000795,GO:0000800,GO:0001709,GO:0001932,GO:0003002,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003690,GO:0003697,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005739,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006268,GO:0006275,GO:0006281,GO:0006282,GO:0006302,GO:0006310,GO:0006312,GO:0006323,GO:0006325,GO:0006342,GO:0006355,GO:0006403,GO:0006725,GO:0006807,GO:0006915,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007127,GO:0007131,GO:0007143,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007293,GO:0007294,GO:0007389,GO:0007530,GO:0007531,GO:0007533,GO:0008022,GO:0008094,GO:0008144,GO:0008150,GO:0008152,GO:0008156,GO:0008219,GO:0008298,GO:0008630,GO:0009058,GO:0009059,GO:0009314,GO:0009410,GO:0009628,GO:0009653,GO:0009719,GO:0009790,GO:0009792,GO:0009798,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009948,GO:0009949,GO:0009950,GO:0009951,GO:0009952,GO:0009953,GO:0009987,GO:0009994,GO:0010032,GO:0010033,GO:0010035,GO:0010212,GO:0010243,GO:0010332,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010569,GO:0010604,GO:0010605,GO:0010629,GO:0010833,GO:0010941,GO:0010948,GO:0012501,GO:0014070,GO:0014074,GO:0016043,GO:0016458,GO:0016462,GO:0016604,GO:0016605,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0017151,GO:0019219,GO:0019220,GO:0019222,GO:0019899,GO:0019953,GO:0022402,GO:0022412,GO:0022413,GO:0022414,GO:0022607,GO:0023052,GO:0030154,GO:0030261,GO:0030491,GO:0030554,GO:0030702,GO:0030706,GO:0030716,GO:0030717,GO:0031000,GO:0031297,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031399,GO:0031974,GO:0031981,GO:0032200,GO:0032268,GO:0032392,GO:0032501,GO:0032502,GO:0032504,GO:0032505,GO:0032508,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033036,GO:0033170,GO:0033260,GO:0033554,GO:0034622,GO:0034641,GO:0034645,GO:0035556,GO:0035639,GO:0035690,GO:0035825,GO:0035861,GO:0036094,GO:0036270,GO:0036297,GO:0040029,GO:0042148,GO:0042221,GO:0042325,GO:0042493,GO:0042592,GO:0042623,GO:0042771,GO:0042802,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043073,GO:0043142,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043279,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044703,GO:0044786,GO:0044877,GO:0045003,GO:0045005,GO:0045165,GO:0045786,GO:0045814,GO:0045892,GO:0045934,GO:0045935,GO:0046483,GO:0048285,GO:0048468,GO:0048471,GO:0048477,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051054,GO:0051105,GO:0051106,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051246,GO:0051252,GO:0051253,GO:0051259,GO:0051260,GO:0051276,GO:0051321,GO:0051641,GO:0051704,GO:0051716,GO:0051726,GO:0060249,GO:0060255,GO:0060548,GO:0061806,GO:0061982,GO:0061988,GO:0065001,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0070013,GO:0070182,GO:0070192,GO:0070316,GO:0070317,GO:0070727,GO:0070887,GO:0071103,GO:0071214,GO:0071241,GO:0071310,GO:0071312,GO:0071407,GO:0071417,GO:0071478,GO:0071479,GO:0071495,GO:0071704,GO:0071824,GO:0071840,GO:0072331,GO:0072332,GO:0072710,GO:0072711,GO:0072757,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090329,GO:0090734,GO:0090735,GO:0097159,GO:0097190,GO:0097193,GO:0097305,GO:0097306,GO:0097327,GO:0097329,GO:0097367,GO:0098687,GO:0099086,GO:0104004,GO:0110026,GO:0110027,GO:0140013,GO:0140097,GO:1901265,GO:1901360,GO:1901363,GO:1901563,GO:1901576,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902298,GO:1902679,GO:1902969,GO:1903046,GO:1903047,GO:1903506,GO:1903507,GO:1905334,GO:1990414,GO:1990426,GO:1990505,GO:1990918,GO:2000104,GO:2000112,GO:2000113,GO:2000779,GO:2001020,GO:2001141
Evalue5.75e-173
EggNOG OGsCOG0468@1|root,KOG1433@2759|Eukaryota
Descriptionrecombinase activity
COG categoryL
BRITEko00000,ko00001,ko00002,ko03019,ko03036,ko03400,ko04121,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9592Gcaud9592Gracilaria caudata M_176_S67 malegeneNODE_749_length_18675_cov_4.529918 14420..15442 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9592.t1.start1Gcaud9592.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_749_length_18675_cov_4.529918 14420..14422 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9592.t1.CDS1Gcaud9592.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_749_length_18675_cov_4.529918 14420..15442 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9592.t1.exon1Gcaud9592.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_749_length_18675_cov_4.529918 14420..15442 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9592.t1.stop1Gcaud9592.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_749_length_18675_cov_4.529918 15440..15442 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9592.t1Gcaud9592.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_749_length_18675_cov_4.529918 14420..15442 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud9592.t1 ID=Gcaud9592.t1|Name=Gcaud9592.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=341bp
MAQTAEVYQAEHAVDDAVDAAGPLLVERLEDLGISATDTKKLRDAGLMTV
ESVAYSTKKRLLAVKGISETKADKLIAEAAKLVPLGFCTAAEYFQIREQQ
LSLTTGSKELDGLLGSGIETGSITEIFGEFRTGKTQLCHTLAITCQMPME
QGGAEGKAMYIDTEGTFRPERCKSIAERFGLDPEEALDNVSFARAYNSDH
QMQLLQQACALMAETRYALLIVDSATALYRTDFTGRGELAARQQHMGQFL
RALQRIADEFGCAVVITNQVVAQVDGGAMFAVDPKKPIGGNIIAHASQTR
LSLRKARGENRICKIYDSPNLPEAEATFSISEGGITDATD*
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spliced messenger RNA

>Gcaud9592.t1 ID=Gcaud9592.t1|Name=Gcaud9592.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1023bp|location=Sequence derived from alignment at NODE_749_length_18675_cov_4.529918:14420..15442+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCACAAACCGCCGAAGTGTACCAAGCGGAGCACGCCGTCGACGACGC
CGTCGATGCCGCCGGCCCGTTGCTCGTCGAGCGTCTCGAGGACCTGGGCA
TCTCCGCCACCGATACTAAGAAGCTTCGCGATGCCGGTCTTATGACCGTC
GAGTCCGTCGCGTATTCCACCAAGAAACGTCTGTTGGCTGTCAAGGGCAT
CTCGGAGACAAAGGCTGACAAACTTATCGCGGAGGCCGCCAAGCTCGTCC
CACTTGGTTTTTGTACTGCTGCGGAGTACTTTCAGATCCGAGAGCAGCAA
CTCAGCCTGACCACCGGCTCCAAGGAGCTTGATGGCTTGCTCGGCTCTGG
TATTGAGACTGGGTCTATCACAGAAATCTTTGGCGAGTTCCGCACGGGCA
AAACCCAGCTGTGTCACACGCTGGCTATCACCTGTCAGATGCCCATGGAA
CAGGGTGGGGCGGAGGGAAAGGCCATGTACATCGATACCGAGGGCACATT
TCGTCCAGAGCGATGCAAATCAATAGCGGAGCGTTTTGGATTGGATCCAG
AAGAGGCTCTTGACAATGTCTCCTTTGCGCGTGCGTACAACTCCGATCAT
CAGATGCAGTTGTTGCAACAGGCCTGTGCCCTCATGGCAGAGACCCGCTA
CGCACTGCTCATTGTCGACTCTGCAACCGCTTTGTACAGAACCGACTTCA
CCGGCAGAGGAGAGCTTGCAGCACGACAGCAGCACATGGGACAGTTTTTG
CGCGCGTTGCAACGCATTGCCGATGAATTTGGTTGCGCTGTCGTCATCAC
CAATCAAGTCGTGGCTCAGGTCGATGGCGGCGCTATGTTCGCGGTTGATC
CTAAGAAGCCTATCGGAGGTAACATCATCGCGCACGCAAGTCAAACGAGG
TTGTCACTGAGAAAGGCTCGTGGTGAAAACCGTATTTGTAAGATTTACGA
TAGTCCCAATCTACCTGAGGCTGAGGCCACATTTTCTATCAGCGAAGGTG
GCATCACAGATGCCACTGATTAG
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protein sequence of Gcaud9592.t1

>Gcaud9592.t1 ID=Gcaud9592.t1|Name=Gcaud9592.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=341bp
MAQTAEVYQAEHAVDDAVDAAGPLLVERLEDLGISATDTKKLRDAGLMTV
ESVAYSTKKRLLAVKGISETKADKLIAEAAKLVPLGFCTAAEYFQIREQQ
LSLTTGSKELDGLLGSGIETGSITEIFGEFRTGKTQLCHTLAITCQMPME
QGGAEGKAMYIDTEGTFRPERCKSIAERFGLDPEEALDNVSFARAYNSDH
QMQLLQQACALMAETRYALLIVDSATALYRTDFTGRGELAARQQHMGQFL
RALQRIADEFGCAVVITNQVVAQVDGGAMFAVDPKKPIGGNIIAHASQTR
LSLRKARGENRICKIYDSPNLPEAEATFSISEGGITDATD*
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mRNA from alignment at NODE_749_length_18675_cov_4.529918:14420..15442+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud9592.t1 ID=Gcaud9592.t1|Name=Gcaud9592.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1023bp|location=Sequence derived from alignment at NODE_749_length_18675_cov_4.529918:14420..15442+ (Gracilaria caudata M_176_S67 male)
ATGGCACAAACCGCCGAAGTGTACCAAGCGGAGCACGCCGTCGACGACGC
CGTCGATGCCGCCGGCCCGTTGCTCGTCGAGCGTCTCGAGGACCTGGGCA
TCTCCGCCACCGATACTAAGAAGCTTCGCGATGCCGGTCTTATGACCGTC
GAGTCCGTCGCGTATTCCACCAAGAAACGTCTGTTGGCTGTCAAGGGCAT
CTCGGAGACAAAGGCTGACAAACTTATCGCGGAGGCCGCCAAGCTCGTCC
CACTTGGTTTTTGTACTGCTGCGGAGTACTTTCAGATCCGAGAGCAGCAA
CTCAGCCTGACCACCGGCTCCAAGGAGCTTGATGGCTTGCTCGGCTCTGG
TATTGAGACTGGGTCTATCACAGAAATCTTTGGCGAGTTCCGCACGGGCA
AAACCCAGCTGTGTCACACGCTGGCTATCACCTGTCAGATGCCCATGGAA
CAGGGTGGGGCGGAGGGAAAGGCCATGTACATCGATACCGAGGGCACATT
TCGTCCAGAGCGATGCAAATCAATAGCGGAGCGTTTTGGATTGGATCCAG
AAGAGGCTCTTGACAATGTCTCCTTTGCGCGTGCGTACAACTCCGATCAT
CAGATGCAGTTGTTGCAACAGGCCTGTGCCCTCATGGCAGAGACCCGCTA
CGCACTGCTCATTGTCGACTCTGCAACCGCTTTGTACAGAACCGACTTCA
CCGGCAGAGGAGAGCTTGCAGCACGACAGCAGCACATGGGACAGTTTTTG
CGCGCGTTGCAACGCATTGCCGATGAATTTGGTTGCGCTGTCGTCATCAC
CAATCAAGTCGTGGCTCAGGTCGATGGCGGCGCTATGTTCGCGGTTGATC
CTAAGAAGCCTATCGGAGGTAACATCATCGCGCACGCAAGTCAAACGAGG
TTGTCACTGAGAAAGGCTCGTGGTGAAAACCGTATTTGTAAGATTTACGA
TAGTCCCAATCTACCTGAGGCTGAGGCCACATTTTCTATCAGCGAAGGTG
GCATCACAGATGCCACTGATTAG
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Coding sequence (CDS) from alignment at NODE_749_length_18675_cov_4.529918:14420..15442+

>Gcaud9592.t1 ID=Gcaud9592.t1|Name=Gcaud9592.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1023bp|location=Sequence derived from alignment at NODE_749_length_18675_cov_4.529918:14420..15442+ (Gracilaria caudata M_176_S67 male)
ATGGCACAAACCGCCGAAGTGTACCAAGCGGAGCACGCCGTCGACGACGC
CGTCGATGCCGCCGGCCCGTTGCTCGTCGAGCGTCTCGAGGACCTGGGCA
TCTCCGCCACCGATACTAAGAAGCTTCGCGATGCCGGTCTTATGACCGTC
GAGTCCGTCGCGTATTCCACCAAGAAACGTCTGTTGGCTGTCAAGGGCAT
CTCGGAGACAAAGGCTGACAAACTTATCGCGGAGGCCGCCAAGCTCGTCC
CACTTGGTTTTTGTACTGCTGCGGAGTACTTTCAGATCCGAGAGCAGCAA
CTCAGCCTGACCACCGGCTCCAAGGAGCTTGATGGCTTGCTCGGCTCTGG
TATTGAGACTGGGTCTATCACAGAAATCTTTGGCGAGTTCCGCACGGGCA
AAACCCAGCTGTGTCACACGCTGGCTATCACCTGTCAGATGCCCATGGAA
CAGGGTGGGGCGGAGGGAAAGGCCATGTACATCGATACCGAGGGCACATT
TCGTCCAGAGCGATGCAAATCAATAGCGGAGCGTTTTGGATTGGATCCAG
AAGAGGCTCTTGACAATGTCTCCTTTGCGCGTGCGTACAACTCCGATCAT
CAGATGCAGTTGTTGCAACAGGCCTGTGCCCTCATGGCAGAGACCCGCTA
CGCACTGCTCATTGTCGACTCTGCAACCGCTTTGTACAGAACCGACTTCA
CCGGCAGAGGAGAGCTTGCAGCACGACAGCAGCACATGGGACAGTTTTTG
CGCGCGTTGCAACGCATTGCCGATGAATTTGGTTGCGCTGTCGTCATCAC
CAATCAAGTCGTGGCTCAGGTCGATGGCGGCGCTATGTTCGCGGTTGATC
CTAAGAAGCCTATCGGAGGTAACATCATCGCGCACGCAAGTCAAACGAGG
TTGTCACTGAGAAAGGCTCGTGGTGAAAACCGTATTTGTAAGATTTACGA
TAGTCCCAATCTACCTGAGGCTGAGGCCACATTTTCTATCAGCGAAGGTG
GCATCACAGATGCCACTGATTAG
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