Gcaud9675.t2 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud9675.t2
Unique NameGcaud9675.t2
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length617
Homology
BLAST of Gcaud9675.t2 vs. uniprot
Match: A0A2V3J5G9_9FLOR (Cyclin-U4-1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5G9_9FLOR)

HSP 1 Score: 255 bits (651), Expect = 8.780e-77
Identity = 144/232 (62.07%), Postives = 165/232 (71.12%), Query Frame = 0
Query:  394 PRLTNCELLISVLECYMTLQIRRNQ---TEQACEPISPVVSSRAPSRHSPSSQLKQEPSVFHALQPPSITPVEYLRRLARYAFCSRSAFILAFYYLQKIANLPQTCLTVNSLSIHRLLLTATLLATKMVDDILYDNAHFAKVGGLDVKELNMLELDMLRVLHFELCVSAEQFEAFERSVLSDVLSCEDSQFAMLHERLRNMGYSLDEQ------------LPPSSPVSSLDD 610
            PRL++C+LLISVL+CYMTL IR N    T Q C    P  S        P+S    EPSVFHALQ PSITP EYLRRL+RYAFCSRS FI+AFYYL KIA      L VN+LS+HRLLLTATLLATKM+DD+LYDNAHFAKVGGLDV ELNML   ML +L FEL VS +QFE FE+ VL+ VL C DS + +LHERLRNMGY++  +            LPP SPVSS+DD
Sbjct:   61 PRLSSCDLLISVLDCYMTLHIRANSATATPQLCN--QPSSSXXXXXXXXPAS----EPSVFHALQAPSITPSEYLRRLSRYAFCSRSVFIVAFYYLHKIAQKRSLNLCVNALSVHRLLLTATLLATKMMDDVLYDNAHFAKVGGLDVAELNMLXXXMLHMLQFELVVSTDQFERFEKRVLTHVLHCHDSSYFVLHERLRNMGYAVSAEPQQKVHQQRVHSLPPCSPVSSIDD 286          
BLAST of Gcaud9675.t2 vs. uniprot
Match: A0A7S1EV37_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1EV37_9RHOD)

HSP 1 Score: 129 bits (325), Expect = 4.350e-30
Identity = 63/138 (45.65%), Postives = 97/138 (70.29%), Query Frame = 0
Query:  441 SSQLKQEPSVFHALQPPSITPVEYLRRLARYAFCSRSAFILAFYYLQKIANLPQTCLTVNSLSIHRLLLTATLLATKMVDDILYDNAHFAKVGGLDVKELNMLELDMLRVLHFELCVSAEQFEAFERSVLSDVLSCED 578
            S  L +  S FH L+PP ++  +YL+R+ RY+FCSRS  ILA Y++ +++    +C  + +L++HRL +TA LLA K  +D+LYDN HF+KVGG+ ++ELN++EL ML  L++EL VS + +  FERS+L +V+   D
Sbjct:   40 SVSLSRLTSEFHGLEPPRVSLHDYLQRIDRYSFCSRSCHILALYFVDRLSK-RSSCFRITALNVHRLYITAFLLAVKSSEDVLYDNLHFSKVGGIYLRELNLMELKMLEELNYELFVSPDSYREFERSILDEVVKSSD 176          
BLAST of Gcaud9675.t2 vs. uniprot
Match: A0A5J4Z087_PORPP (Cyclin-U4-1 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z087_PORPP)

HSP 1 Score: 119 bits (299), Expect = 9.970e-27
Identity = 62/130 (47.69%), Postives = 89/130 (68.46%), Query Frame = 0
Query:  444 LKQEPSVFHALQPPSITPVEYLRRLARYAFCSRSAFILAFYYLQKIANLPQTCLTVNSLSIHRLLLTATLLATKMVDDILYDNAHFAKVGGLDVKELNMLELDMLRVLHFELCVSAEQFEAFERSVLSDV 573
            LK+  S FH L+ P +  ++YL R+ +YAFCSRS F++A  YL  IA +  T   + + ++HRL LTA +LA K  +D+ YDNAHFAKVGG+ V+ELN +EL+ L+ L F + VS +QF A  RS++ +V
Sbjct:   58 LKKCSSEFHGLEVPKVLLLDYLHRIEKYAFCSRSCFVVALVYLDWIAMVDCTY-RLTAFNVHRLFLTALVLAVKFCEDVFYDNAHFAKVGGITVQELNRMELEFLKALEFRMHVSEDQFAACARSMIEEV 186          
BLAST of Gcaud9675.t2 vs. uniprot
Match: A0A5J4YNB6_PORPP (Cyclin-U4-1 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YNB6_PORPP)

HSP 1 Score: 117 bits (292), Expect = 2.240e-25
Identity = 58/136 (42.65%), Postives = 90/136 (66.18%), Query Frame = 0
Query:  440 PSSQLKQE-PSVFHALQPPSITPVEYLRRLARYAFCSRSAFILAFYYLQKIANLPQTCLTVNSLSIHRLLLTATLLATKMVDDILYDNAHFAKVGGLDVKELNMLELDMLRVLHFELCVSAEQFEAFERSVLSDVL 574
            P S  +QE  ++FHA  PP I+PVEY+ R+ +YAFCS S FI A  YL++I       L +++ + HRL +T+ +LA K  DD+ Y+N ++++VGG+ + E+N LEL+ LR L+FEL +  E+F  FE  ++ + L
Sbjct:  106 PGSGARQEYATLFHAATPPPISPVEYMHRVFKYAFCSSSCFIAALAYLERIRR-HNASLRLSNTNFHRLWITSVMLAAKFFDDVYYENTYYSRVGGISLDEMNALELEFLRTLNFELFIQPEEFSQFENELIGETL 240          
BLAST of Gcaud9675.t2 vs. uniprot
Match: A0A6J0JM60_RAPSA (Cyclin n=1 Tax=Raphanus sativus TaxID=3726 RepID=A0A6J0JM60_RAPSA)

HSP 1 Score: 111 bits (278), Expect = 1.490e-24
Identity = 57/120 (47.50%), Postives = 83/120 (69.17%), Query Frame = 0
Query:  446 QEPSVFHALQPPSITPVEYLRRLARYAFCSRSAFILAFYYLQKIANLPQTCLTVNSLSIHRLLLTATLLATKMVDDILYDNAHFAKVGGLDVKELNMLELDMLRVLHFELCVSAEQFEAF 565
            Q  SVFH L  PSIT   YL R+ +YA CSRS F++A+ YL +  +  Q  L +NSL++HRLL+T+ +++ K +DD  Y+NA++AKVGG+  KE+N+LELD L  L F+L V+   F ++
Sbjct:   39 QRVSVFHGLSLPSITIQSYLERIFKYAHCSRSCFVVAYVYLDRFTH-RQPSLPINSLNVHRLLITSVMVSAKFLDDRYYNNAYYAKVGGISTKEMNLLELDFLFGLGFDLNVTPNTFHSY 157          
BLAST of Gcaud9675.t2 vs. uniprot
Match: A0A0D3B6R2_BRAOL (Cyclin n=4 Tax=Brassica TaxID=3705 RepID=A0A0D3B6R2_BRAOL)

HSP 1 Score: 110 bits (276), Expect = 2.780e-24
Identity = 57/120 (47.50%), Postives = 81/120 (67.50%), Query Frame = 0
Query:  446 QEPSVFHALQPPSITPVEYLRRLARYAFCSRSAFILAFYYLQKIANLPQTCLTVNSLSIHRLLLTATLLATKMVDDILYDNAHFAKVGGLDVKELNMLELDMLRVLHFELCVSAEQFEAF 565
            Q  SVFH L  PSIT   YL R+ +YA CS S F++A+ YL +  +  Q  L +NS ++HRLL+T+ + A K +DD+ Y+NA++AKVGG+  KE+N+LELD L  L F+L V+   F A+
Sbjct:   39 QSNSVFHGLSRPSITIQSYLERIYKYANCSSSCFVVAYVYLDRFTH-RQPSLPINSFNVHRLLITSVMTAAKFLDDLYYNNAYYAKVGGISTKEMNLLELDFLFGLGFDLNVTPNTFHAY 157          
BLAST of Gcaud9675.t2 vs. uniprot
Match: CCU41_ARATH (Cyclin-U4-1 n=25 Tax=Brassicaceae TaxID=3700 RepID=CCU41_ARATH)

HSP 1 Score: 110 bits (275), Expect = 4.210e-24
Identity = 57/120 (47.50%), Postives = 81/120 (67.50%), Query Frame = 0
Query:  446 QEPSVFHALQPPSITPVEYLRRLARYAFCSRSAFILAFYYLQKIANLPQTCLTVNSLSIHRLLLTATLLATKMVDDILYDNAHFAKVGGLDVKELNMLELDMLRVLHFELCVSAEQFEAF 565
            Q  SVFH L  P+IT   YL R+ +YA CS S F++A+ YL +  +  Q  L +NS ++HRLL+T+ ++A K +DD+ Y+NA++AKVGG+  KE+N LELD L  L FEL V+   F A+
Sbjct:   39 QRVSVFHGLSRPTITIQSYLERIFKYANCSPSCFVVAYVYLDRFTH-RQPSLPINSFNVHRLLITSVMVAAKFLDDLYYNNAYYAKVGGISTKEMNFLELDFLFGLGFELNVTPNTFNAY 157          
BLAST of Gcaud9675.t2 vs. uniprot
Match: A0A2P6SM23_ROSCH (Cyclin n=2 Tax=Rosoideae TaxID=171638 RepID=A0A2P6SM23_ROSCH)

HSP 1 Score: 109 bits (273), Expect = 8.060e-24
Identity = 56/120 (46.67%), Postives = 83/120 (69.17%), Query Frame = 0
Query:  446 QEPSVFHALQPPSITPVEYLRRLARYAFCSRSAFILAFYYLQKIANLPQTCLTVNSLSIHRLLLTATLLATKMVDDILYDNAHFAKVGGLDVKELNMLELDMLRVLHFELCVSAEQFEAF 565
            Q+ SVFH L  P+I+   YL R+ +YA CS S F++A+ YL +     Q  L +NS ++HRLL+T+ L++ K +DD+ Y+NA+FA+VGG+  KE+N+LE+D L  L FEL V+ E F A+
Sbjct:   37 QKLSVFHCLTKPTISIHSYLERIFKYADCSPSCFVVAYVYLDRFTQ-RQKALPINSFNVHRLLITSVLVSAKFMDDVSYNNAYFARVGGISTKEMNLLEMDFLFGLGFELNVTTENFFAY 155          
BLAST of Gcaud9675.t2 vs. uniprot
Match: A0A087H575_ARAAL (Cyclin n=1 Tax=Arabis alpina TaxID=50452 RepID=A0A087H575_ARAAL)

HSP 1 Score: 109 bits (272), Expect = 1.040e-23
Identity = 55/120 (45.83%), Postives = 82/120 (68.33%), Query Frame = 0
Query:  446 QEPSVFHALQPPSITPVEYLRRLARYAFCSRSAFILAFYYLQKIANLPQTCLTVNSLSIHRLLLTATLLATKMVDDILYDNAHFAKVGGLDVKELNMLELDMLRVLHFELCVSAEQFEAF 565
            Q  SVFH L  P+IT   YL R+ +YA CS S F++A+ YL +  +  Q  L +NS ++HRLL+T+ +++ K +DD+ Y+NA++AKVGG+  KE+N+LELD L  L F+L V    F+A+
Sbjct:   39 QRVSVFHGLSRPTITIQSYLERIYKYANCSPSCFVVAYVYLDRFTH-RQPSLPINSFNVHRLLITSVMVSAKFLDDLYYNNAYYAKVGGISTKEMNLLELDFLFGLGFDLNVKPNTFQAY 157          
BLAST of Gcaud9675.t2 vs. uniprot
Match: A0A7J7CDM3_TRIWF (Cyclin-U4-1 n=1 Tax=Tripterygium wilfordii TaxID=458696 RepID=A0A7J7CDM3_TRIWF)

HSP 1 Score: 110 bits (276), Expect = 1.420e-23
Identity = 62/143 (43.36%), Postives = 90/143 (62.94%), Query Frame = 0
Query:  449 SVFHALQPPSITPVEYLRRLARYAFCSRSAFILAFYYLQKIANLPQTCLTVNSLSIHRLLLTATLLATKMVDDILYDNAHFAKVGGLDVKELNMLELDMLRVLHFELCVSAEQFEAFERSVLSDVLSCEDSQFAM-----LHE 586
            SVFH L  P I+   YL R+ +YA CS+S F++A+ YL + A   Q  L +NS ++HRLL+T+ L++ K +DDI YDNA++AKVGG+   E+N+LELD L  L FEL V+   F+ +   +  ++L     Q A+     LHE
Sbjct:  104 SVFHGLTRPPISIQSYLERIFKYANCSQSCFVVAYVYLDRFAQ-KQPSLPINSFNVHRLLITSVLVSAKFMDDIYYDNAYYAKVGGISTTEMNLLELDFLFGLGFELNVTPNTFQTYCSFLQREMLMQSPPQLAVELEPPLHE 245          
The following BLAST results are available for this feature:
BLAST of Gcaud9675.t2 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J5G9_9FLOR8.780e-7762.07Cyclin-U4-1 n=1 Tax=Gracilariopsis chorda TaxID=44... [more]
A0A7S1EV37_9RHOD4.350e-3045.65Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A5J4Z087_PORPP9.970e-2747.69Cyclin-U4-1 n=1 Tax=Porphyridium purpureum TaxID=3... [more]
A0A5J4YNB6_PORPP2.240e-2542.65Cyclin-U4-1 n=1 Tax=Porphyridium purpureum TaxID=3... [more]
A0A6J0JM60_RAPSA1.490e-2447.50Cyclin n=1 Tax=Raphanus sativus TaxID=3726 RepID=A... [more]
A0A0D3B6R2_BRAOL2.780e-2447.50Cyclin n=4 Tax=Brassica TaxID=3705 RepID=A0A0D3B6R... [more]
CCU41_ARATH4.210e-2447.50Cyclin-U4-1 n=25 Tax=Brassicaceae TaxID=3700 RepID... [more]
A0A2P6SM23_ROSCH8.060e-2446.67Cyclin n=2 Tax=Rosoideae TaxID=171638 RepID=A0A2P6... [more]
A0A087H575_ARAAL1.040e-2345.83Cyclin n=1 Tax=Arabis alpina TaxID=50452 RepID=A0A... [more]
A0A7J7CDM3_TRIWF1.420e-2343.36Cyclin-U4-1 n=1 Tax=Tripterygium wilfordii TaxID=4... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.472.10coord: 394..596
e-value: 1.1E-38
score: 134.9
IPR013922Cyclin PHO80-likePFAMPF08613Cyclincoord: 428..555
e-value: 7.1E-30
score: 104.5
IPR013922Cyclin PHO80-likePANTHERPTHR15615UNCHARACTERIZEDcoord: 402..572
IPR036915Cyclin-like superfamilySUPERFAMILY47954Cyclin-likecoord: 462..555

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_731_length_19008_cov_3.951948contigNODE_731_length_19008_cov_3.951948:306..3534 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9675.t2Gcaud9675.t2Gracilaria caudata M_176_S67 malemRNANODE_731_length_19008_cov_3.951948 306..3534 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud9675.t2 ID=Gcaud9675.t2|Name=Gcaud9675.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=617bp
MHVGAAASDSQTFLHLPTPTWVCWVHRARGRTTAESKRLLRLLLSFLLRD
SMQHRNWFRVRGEEQHESKDEKRNKEYLMLIFNHRRALIEKALEDCGGVY
SCAYDELVRAHGHGTPGRPRIGLRLGNALVPAISVLPAAGKRRGSDPTGV
IEQQHCDCSEGMMGSLNWKRERLRKACGHVDRFNKWAAPIHEFWRNEWGD
TYEGFLKVQRELGVLRDEISDRRWFGEQDEYLCGRALTGLRRGLSFMLKS
SAGEWYKRWGELDLHRLCERDALKSIAEFMKQPPWNEMRIDKWRLCDLLC
VEANMLPLRPIRDDSHRRGASVAATTTTTTTTTTVLQDSRSTILYSQRKQ
TAAATRADCASSLDACAQPILHSSSSFDERLPSSFSKQLCATQPRLTNCE
LLISVLECYMTLQIRRNQTEQACEPISPVVSSRAPSRHSPSSQLKQEPSV
FHALQPPSITPVEYLRRLARYAFCSRSAFILAFYYLQKIANLPQTCLTVN
SLSIHRLLLTATLLATKMVDDILYDNAHFAKVGGLDVKELNMLELDMLRV
LHFELCVSAEQFEAFERSVLSDVLSCEDSQFAMLHERLRNMGYSLDEQLP
PSSPVSSLDDFSSDHV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013922Cyclin_PHO80-like
IPR036915Cyclin-like_sf