Gcaud3612.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3612.t1
Unique Name	Gcaud3612.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	465

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_721_length_19109_cov_4.832422	contig	NODE_721_length_19109_cov_4.832422:10179..11573 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3612	Gcaud3612	Gracilaria caudata M_176_S67 male	gene	NODE_721_length_19109_cov_4.832422 10179..12038 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3612.t1.stop1	Gcaud3612.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_721_length_19109_cov_4.832422 10179..10181 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3612.t1.CDS1	Gcaud3612.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_721_length_19109_cov_4.832422 10179..11573 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3612.t1.exon1	Gcaud3612.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_721_length_19109_cov_4.832422 10179..11573 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3612.t1.start1	Gcaud3612.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_721_length_19109_cov_4.832422 11571..11573 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3612.t1	Gcaud3612.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_721_length_19109_cov_4.832422 10179..11573 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_721_length_19109_cov_4.832422:10179..11573-
coding sequence from alignment at NODE_721_length_19109_cov_4.832422:10179..11573-

mRNA sequence

>Gcaud3612.t1 ID=Gcaud3612.t1|Name=Gcaud3612.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=465bp
MFRYIFTQHEQLRHFLRSHGDDCWAAAQRGIDEFLNDFGEDLSPGEQVIQ
TVLSFLKRAVGFLASSTGKAMLDMCLQLAQFAILAQMSQVERGLRISVLQ
ELNALGPTFEGEPGENGYTRTFSGGKKYRTSRLRREFLRRNTALNPHAVE
MDVVTVALSYKHFWRNSKQKITQPDFEAIASFIEASRGSRIRFWVDSKLP
PTNDGSFERWLTRGIRPYCRYLTLICPSAKASQGRFWIANEKYLATAGRG
IFYFRGDEIQPDEILFDKGHEDFKKLAKLLVKLVIGEEELPPGVNTEDEG
KVHQWALGILGSRQNDLVNQIGPKADELHFPDFDESRAISHVQDVIRGNG
PHTLPLIPGRIWNKYNPLMKGSDGDQLHKMVGWIGLVHPDEKENIYFLHV
FLLKDLNEPSAAVLRVRLQKPYDEQDGNFIEEKVLMMMESTALRKMHPVA
VPVTCEWEVFSGTQ*

spliced messenger RNA

>Gcaud3612.t1 ID=Gcaud3612.t1|Name=Gcaud3612.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1395bp|location=Sequence derived from alignment at NODE_721_length_19109_cov_4.832422:10179..11573- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCCGATATATTTTCACTCAGCATGAGCAGCTGAGGCATTTCCTCCG
GTCCCACGGGGATGATTGTTGGGCCGCGGCACAGAGAGGTATTGACGAGT
TTTTGAATGACTTTGGGGAAGATTTATCTCCTGGTGAACAAGTTATTCAA
ACCGTTCTTTCTTTTCTCAAACGCGCCGTGGGGTTTTTGGCAAGCTCCAC
AGGAAAAGCGATGTTAGACATGTGCTTACAGCTTGCGCAGTTCGCCATAC
TGGCACAAATGTCGCAAGTGGAACGGGGGCTTAGAATTTCAGTACTTCAA
GAACTCAACGCTCTTGGTCCCACCTTCGAGGGCGAACCCGGCGAAAATGG
TTATACCAGAACATTTAGTGGAGGGAAGAAGTACAGAACCTCGCGACTTC
GAAGAGAATTTCTGCGAAGAAACACTGCCTTAAACCCACATGCCGTGGAA
ATGGACGTCGTGACGGTTGCTCTTTCTTACAAACACTTCTGGCGAAACTC
GAAGCAAAAGATAACCCAGCCTGACTTCGAAGCAATTGCATCTTTCATCG
AGGCAAGTCGGGGTTCCCGGATACGATTCTGGGTTGACAGCAAGTTGCCA
CCTACCAATGATGGTTCGTTTGAACGATGGCTGACAAGAGGAATAAGACC
ATATTGTCGCTATCTGACGCTTATCTGCCCTTCTGCCAAAGCATCACAGG
GAAGGTTTTGGATAGCAAACGAGAAGTATCTGGCCACTGCAGGCAGGGGA
ATTTTCTATTTCCGTGGAGATGAGATACAGCCTGATGAGATACTGTTCGA
CAAGGGCCATGAAGATTTTAAGAAGCTTGCAAAGCTATTGGTGAAGCTAG
TCATCGGAGAAGAAGAACTTCCGCCAGGAGTCAACACTGAAGACGAAGGA
AAGGTACATCAATGGGCGTTAGGTATTCTCGGAAGCCGCCAAAATGATCT
CGTTAATCAGATTGGTCCGAAAGCTGATGAACTCCATTTTCCTGACTTTG
ACGAAAGCAGAGCAATTAGTCACGTGCAAGACGTCATTAGAGGAAATGGA
CCGCACACACTACCACTGATTCCTGGAAGAATATGGAACAAGTACAATCC
TTTGATGAAAGGTAGTGATGGTGACCAACTGCATAAGATGGTTGGGTGGA
TTGGTTTAGTACACCCCGACGAGAAGGAGAACATATACTTCTTGCATGTT
TTCCTTTTGAAAGACTTAAATGAACCCAGTGCCGCTGTTTTGCGCGTGCG
TCTACAGAAACCATATGATGAACAAGATGGGAATTTCATCGAGGAGAAAG
TTCTGATGATGATGGAAAGCACTGCGTTACGCAAAATGCATCCGGTGGCA
GTACCCGTCACGTGTGAATGGGAAGTCTTCTCCGGCACACAATGA

protein sequence of Gcaud3612.t1

>Gcaud3612.t1 ID=Gcaud3612.t1|Name=Gcaud3612.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=465bp
MFRYIFTQHEQLRHFLRSHGDDCWAAAQRGIDEFLNDFGEDLSPGEQVIQ
TVLSFLKRAVGFLASSTGKAMLDMCLQLAQFAILAQMSQVERGLRISVLQ
ELNALGPTFEGEPGENGYTRTFSGGKKYRTSRLRREFLRRNTALNPHAVE
MDVVTVALSYKHFWRNSKQKITQPDFEAIASFIEASRGSRIRFWVDSKLP
PTNDGSFERWLTRGIRPYCRYLTLICPSAKASQGRFWIANEKYLATAGRG
IFYFRGDEIQPDEILFDKGHEDFKKLAKLLVKLVIGEEELPPGVNTEDEG
KVHQWALGILGSRQNDLVNQIGPKADELHFPDFDESRAISHVQDVIRGNG
PHTLPLIPGRIWNKYNPLMKGSDGDQLHKMVGWIGLVHPDEKENIYFLHV
FLLKDLNEPSAAVLRVRLQKPYDEQDGNFIEEKVLMMMESTALRKMHPVA
VPVTCEWEVFSGTQ*

mRNA from alignment at NODE_721_length_19109_cov_4.832422:10179..11573-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3612.t1 ID=Gcaud3612.t1|Name=Gcaud3612.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1395bp|location=Sequence derived from alignment at NODE_721_length_19109_cov_4.832422:10179..11573- (Gracilaria caudata M_176_S67 male)
ATGTTCCGATATATTTTCACTCAGCATGAGCAGCTGAGGCATTTCCTCCG
GTCCCACGGGGATGATTGTTGGGCCGCGGCACAGAGAGGTATTGACGAGT
TTTTGAATGACTTTGGGGAAGATTTATCTCCTGGTGAACAAGTTATTCAA
ACCGTTCTTTCTTTTCTCAAACGCGCCGTGGGGTTTTTGGCAAGCTCCAC
AGGAAAAGCGATGTTAGACATGTGCTTACAGCTTGCGCAGTTCGCCATAC
TGGCACAAATGTCGCAAGTGGAACGGGGGCTTAGAATTTCAGTACTTCAA
GAACTCAACGCTCTTGGTCCCACCTTCGAGGGCGAACCCGGCGAAAATGG
TTATACCAGAACATTTAGTGGAGGGAAGAAGTACAGAACCTCGCGACTTC
GAAGAGAATTTCTGCGAAGAAACACTGCCTTAAACCCACATGCCGTGGAA
ATGGACGTCGTGACGGTTGCTCTTTCTTACAAACACTTCTGGCGAAACTC
GAAGCAAAAGATAACCCAGCCTGACTTCGAAGCAATTGCATCTTTCATCG
AGGCAAGTCGGGGTTCCCGGATACGATTCTGGGTTGACAGCAAGTTGCCA
CCTACCAATGATGGTTCGTTTGAACGATGGCTGACAAGAGGAATAAGACC
ATATTGTCGCTATCTGACGCTTATCTGCCCTTCTGCCAAAGCATCACAGG
GAAGGTTTTGGATAGCAAACGAGAAGTATCTGGCCACTGCAGGCAGGGGA
ATTTTCTATTTCCGTGGAGATGAGATACAGCCTGATGAGATACTGTTCGA
CAAGGGCCATGAAGATTTTAAGAAGCTTGCAAAGCTATTGGTGAAGCTAG
TCATCGGAGAAGAAGAACTTCCGCCAGGAGTCAACACTGAAGACGAAGGA
AAGGTACATCAATGGGCGTTAGGTATTCTCGGAAGCCGCCAAAATGATCT
CGTTAATCAGATTGGTCCGAAAGCTGATGAACTCCATTTTCCTGACTTTG
ACGAAAGCAGAGCAATTAGTCACGTGCAAGACGTCATTAGAGGAAATGGA
CCGCACACACTACCACTGATTCCTGGAAGAATATGGAACAAGTACAATCC
TTTGATGAAAGGTAGTGATGGTGACCAACTGCATAAGATGGTTGGGTGGA
TTGGTTTAGTACACCCCGACGAGAAGGAGAACATATACTTCTTGCATGTT
TTCCTTTTGAAAGACTTAAATGAACCCAGTGCCGCTGTTTTGCGCGTGCG
TCTACAGAAACCATATGATGAACAAGATGGGAATTTCATCGAGGAGAAAG
TTCTGATGATGATGGAAAGCACTGCGTTACGCAAAATGCATCCGGTGGCA
GTACCCGTCACGTGTGAATGGGAAGTCTTCTCCGGCACACAATGA

Coding sequence (CDS) from alignment at NODE_721_length_19109_cov_4.832422:10179..11573-

>Gcaud3612.t1 ID=Gcaud3612.t1|Name=Gcaud3612.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1395bp|location=Sequence derived from alignment at NODE_721_length_19109_cov_4.832422:10179..11573- (Gracilaria caudata M_176_S67 male)
ATGTTCCGATATATTTTCACTCAGCATGAGCAGCTGAGGCATTTCCTCCG
GTCCCACGGGGATGATTGTTGGGCCGCGGCACAGAGAGGTATTGACGAGT
TTTTGAATGACTTTGGGGAAGATTTATCTCCTGGTGAACAAGTTATTCAA
ACCGTTCTTTCTTTTCTCAAACGCGCCGTGGGGTTTTTGGCAAGCTCCAC
AGGAAAAGCGATGTTAGACATGTGCTTACAGCTTGCGCAGTTCGCCATAC
TGGCACAAATGTCGCAAGTGGAACGGGGGCTTAGAATTTCAGTACTTCAA
GAACTCAACGCTCTTGGTCCCACCTTCGAGGGCGAACCCGGCGAAAATGG
TTATACCAGAACATTTAGTGGAGGGAAGAAGTACAGAACCTCGCGACTTC
GAAGAGAATTTCTGCGAAGAAACACTGCCTTAAACCCACATGCCGTGGAA
ATGGACGTCGTGACGGTTGCTCTTTCTTACAAACACTTCTGGCGAAACTC
GAAGCAAAAGATAACCCAGCCTGACTTCGAAGCAATTGCATCTTTCATCG
AGGCAAGTCGGGGTTCCCGGATACGATTCTGGGTTGACAGCAAGTTGCCA
CCTACCAATGATGGTTCGTTTGAACGATGGCTGACAAGAGGAATAAGACC
ATATTGTCGCTATCTGACGCTTATCTGCCCTTCTGCCAAAGCATCACAGG
GAAGGTTTTGGATAGCAAACGAGAAGTATCTGGCCACTGCAGGCAGGGGA
ATTTTCTATTTCCGTGGAGATGAGATACAGCCTGATGAGATACTGTTCGA
CAAGGGCCATGAAGATTTTAAGAAGCTTGCAAAGCTATTGGTGAAGCTAG
TCATCGGAGAAGAAGAACTTCCGCCAGGAGTCAACACTGAAGACGAAGGA
AAGGTACATCAATGGGCGTTAGGTATTCTCGGAAGCCGCCAAAATGATCT
CGTTAATCAGATTGGTCCGAAAGCTGATGAACTCCATTTTCCTGACTTTG
ACGAAAGCAGAGCAATTAGTCACGTGCAAGACGTCATTAGAGGAAATGGA
CCGCACACACTACCACTGATTCCTGGAAGAATATGGAACAAGTACAATCC
TTTGATGAAAGGTAGTGATGGTGACCAACTGCATAAGATGGTTGGGTGGA
TTGGTTTAGTACACCCCGACGAGAAGGAGAACATATACTTCTTGCATGTT
TTCCTTTTGAAAGACTTAAATGAACCCAGTGCCGCTGTTTTGCGCGTGCG
TCTACAGAAACCATATGATGAACAAGATGGGAATTTCATCGAGGAGAAAG
TTCTGATGATGATGGAAAGCACTGCGTTACGCAAAATGCATCCGGTGGCA
GTACCCGTCACGTGTGAATGGGAAGTCTTCTCCGGCACACAATGA