Gcaud3813.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3813.t1
Unique Name	Gcaud3813.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	577

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_71_length_56537_cov_4.318092	contig	NODE_71_length_56537_cov_4.318092:53174..54904 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707637.1
Preferred name	CNOT3
PFAMs	NOT2_3_5,Not3
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K12580
KEGG Pathway	ko03018,map03018
GOs	GO:0000075,GO:0000077,GO:0000175,GO:0000278,GO:0000288,GO:0000289,GO:0000290,GO:0000932,GO:0000956,GO:0001701,GO:0001824,GO:0001825,GO:0001829,GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004535,GO:0004540,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006354,GO:0006355,GO:0006357,GO:0006366,GO:0006368,GO:0006401,GO:0006402,GO:0006417,GO:0006464,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006977,GO:0007049,GO:0007093,GO:0007154,GO:0007165,GO:0007275,GO:0007346,GO:0008150,GO:0008152,GO:0008408,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009653,GO:0009790,GO:0009792,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009966,GO:0009968,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0010646,GO:0010648,GO:0010810,GO:0010811,GO:0010948,GO:0016070,GO:0016071,GO:0016567,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0017148,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0019538,GO:0022402,GO:0023051,GO:0023052,GO:0023057,GO:0030014,GO:0030015,GO:0030154,GO:0030155,GO:0030330,GO:0030447,GO:0031086,GO:0031087,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031570,GO:0031571,GO:0032268,GO:0032269,GO:0032446,GO:0032501,GO:0032502,GO:0032774,GO:0032784,GO:0032786,GO:0032968,GO:0032991,GO:0033143,GO:0033144,GO:0033146,GO:0033147,GO:0033554,GO:0034243,GO:0034248,GO:0034249,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0035556,GO:0035770,GO:0036211,GO:0036464,GO:0040007,GO:0042710,GO:0042770,GO:0043009,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043412,GO:0043900,GO:0043902,GO:0044010,GO:0044011,GO:0044182,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044764,GO:0044773,GO:0044774,GO:0044783,GO:0044819,GO:0045785,GO:0045786,GO:0045787,GO:0045893,GO:0045930,GO:0045935,GO:0045944,GO:0046483,GO:0046700,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048646,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051239,GO:0051246,GO:0051248,GO:0051252,GO:0051254,GO:0051703,GO:0051704,GO:0051716,GO:0051726,GO:0060255,GO:0065007,GO:0070647,GO:0071156,GO:0071158,GO:0071704,GO:0072331,GO:0072395,GO:0072401,GO:0072413,GO:0072422,GO:0072431,GO:0080090,GO:0090068,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0090605,GO:0090609,GO:0097659,GO:0140098,GO:1900187,GO:1900189,GO:1900190,GO:1900192,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901575,GO:1901576,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902400,GO:1902402,GO:1902403,GO:1902680,GO:1902806,GO:1902807,GO:1903047,GO:1903506,GO:1903508,GO:1990904,GO:2000036,GO:2000045,GO:2000112,GO:2000113,GO:2000134,GO:2001141
Evalue	8.45e-108
EggNOG OGs	COG5665@1\|root,KOG2150@2759\|Eukaryota
Description	nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
COG category	K
BRITE	ko00000,ko00001,ko03019

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3813	Gcaud3813	Gracilaria caudata M_176_S67 male	gene	NODE_71_length_56537_cov_4.318092 53174..54904 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3813.t1.stop1	Gcaud3813.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_71_length_56537_cov_4.318092 53174..53176 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3813.t1.CDS1	Gcaud3813.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_71_length_56537_cov_4.318092 53174..54904 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3813.t1.exon1	Gcaud3813.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_71_length_56537_cov_4.318092 53174..54904 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3813.t1.start1	Gcaud3813.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_71_length_56537_cov_4.318092 54902..54904 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3813.t1	Gcaud3813.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_71_length_56537_cov_4.318092 53174..54904 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_71_length_56537_cov_4.318092:53174..54904-
coding sequence from alignment at NODE_71_length_56537_cov_4.318092:53174..54904-

mRNA sequence

>Gcaud3813.t1 ID=Gcaud3813.t1|Name=Gcaud3813.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=577bp
MASRKLQGEIDRVLKKVDEGVQVFEQIWDKVYSAATTAQKEKYEGDLKKE
IKKLQRLRDQIKTWQGDSSIKDKTKLDANRKLIEEKMEKFKICEKETKTK
AFSKEGLAQDRTDPKQKAKTGVGEWVKEAIARLEEQTEELEAEIETLHSG
KRKKRSEENPRVSQLKEVITRHKYHVTMLERVLRAVYNDAVTPAEASDLK
DSVDYYIESNQDPDFYEDVEMYDALNLDSTPAPQPTISKKSRGHDRERDR
DRDRDDEEENHSHSKKNPSSPRNSRGGRNSSTKSSVSNRATSPKNGRGVD
RSPTRVEPSTNRTNTVPARDTTANRGNAPLMSSVVKGNTNLKPTSTKPAA
TSSAAELGRLNNLRANDTTAPIRHPVNGARTKDAAPAGAPLNTTTQPVAP
ETTSPESAEEKLESTDPVIDELEFALAQFQEREHESGLASNNPPPRGTAP
AQTARNPAAVPSCFPSVAAPIFESEEVFARFEPDTLFFIFYYQQGTFQQY
LAARELKRQGWRFHKKYLTWFQRHEDPKVSTDEFETGTFIYFDYANVVVR
GQGSGWCQRIKSEFAFEYRFLEDELV*

spliced messenger RNA

>Gcaud3813.t1 ID=Gcaud3813.t1|Name=Gcaud3813.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1731bp|location=Sequence derived from alignment at NODE_71_length_56537_cov_4.318092:53174..54904- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCAGCCGCAAGCTCCAGGGTGAAATAGACCGGGTGCTTAAGAAGGT
CGATGAGGGTGTCCAGGTCTTTGAACAGATTTGGGACAAGGTGTACAGCG
CCGCCACCACCGCCCAGAAGGAGAAGTATGAGGGCGACCTCAAGAAGGAA
ATCAAAAAGCTTCAACGCTTAAGAGACCAGATCAAGACATGGCAAGGGGA
CAGCTCCATCAAGGACAAGACAAAACTTGACGCCAACCGCAAGCTAATCG
AGGAGAAAATGGAAAAGTTCAAGATCTGCGAAAAGGAAACCAAAACAAAA
GCCTTCTCCAAGGAGGGTCTGGCGCAGGACCGCACAGACCCCAAACAAAA
GGCAAAGACCGGTGTCGGCGAGTGGGTTAAGGAGGCCATTGCTCGTTTAG
AAGAGCAGACAGAAGAGCTCGAAGCAGAAATAGAAACGCTTCACTCTGGA
AAACGGAAGAAGAGGTCAGAAGAAAATCCTCGCGTGTCGCAACTTAAGGA
AGTGATCACCCGACATAAGTATCACGTCACAATGCTTGAAAGAGTTTTAA
GAGCTGTGTACAACGATGCTGTAACACCTGCAGAAGCTTCTGATTTGAAG
GACAGTGTAGATTATTACATCGAAAGCAATCAAGACCCCGATTTTTACGA
AGATGTTGAGATGTACGATGCTCTCAATCTTGACTCAACTCCAGCACCTC
AACCAACAATATCTAAAAAGTCGCGTGGTCATGATCGTGAACGTGATCGC
GATCGTGATCGCGACGACGAGGAGGAGAATCACTCACATTCCAAGAAGAA
CCCTTCATCGCCTCGAAATAGTCGGGGTGGACGTAATAGTAGTACCAAAT
CGTCAGTTTCGAACCGCGCTACCTCCCCCAAGAATGGCAGAGGCGTCGAT
AGATCACCAACACGGGTCGAGCCGAGCACAAACCGAACCAACACCGTACC
TGCGCGAGATACAACAGCCAATCGGGGCAACGCGCCATTGATGAGTTCTG
TTGTGAAGGGTAATACAAACCTCAAGCCGACAAGTACAAAACCGGCTGCC
ACCTCGTCGGCAGCAGAGCTAGGTCGTCTAAATAACCTTCGTGCCAATGA
TACCACTGCGCCAATTCGTCATCCAGTCAATGGAGCAAGAACAAAAGATG
CAGCTCCGGCAGGAGCGCCGCTAAATACCACGACTCAGCCCGTTGCGCCC
GAAACAACAAGCCCCGAAAGCGCAGAAGAAAAGCTTGAGAGCACGGATCC
AGTTATTGACGAGCTCGAGTTTGCTTTGGCGCAGTTTCAGGAGAGAGAAC
ATGAGTCTGGCTTAGCTTCAAACAATCCGCCGCCGAGAGGAACGGCTCCG
GCGCAAACGGCTAGAAACCCAGCAGCAGTTCCTTCGTGCTTTCCGAGCGT
GGCAGCGCCAATCTTTGAGAGCGAGGAAGTATTTGCTCGTTTCGAACCAG
ATACGCTGTTCTTTATATTCTATTACCAGCAAGGTACTTTTCAACAATAT
CTTGCGGCAAGAGAGTTGAAGAGACAAGGATGGCGGTTCCACAAAAAGTA
CCTAACCTGGTTCCAGAGACACGAAGATCCGAAGGTCTCTACTGACGAAT
TCGAAACTGGAACTTTCATTTACTTTGACTATGCTAATGTGGTGGTTAGA
GGGCAAGGGAGCGGGTGGTGTCAACGGATCAAGTCAGAGTTCGCTTTTGA
GTATCGGTTCTTGGAAGACGAATTGGTTTAA

protein sequence of Gcaud3813.t1

>Gcaud3813.t1 ID=Gcaud3813.t1|Name=Gcaud3813.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=577bp
MASRKLQGEIDRVLKKVDEGVQVFEQIWDKVYSAATTAQKEKYEGDLKKE
IKKLQRLRDQIKTWQGDSSIKDKTKLDANRKLIEEKMEKFKICEKETKTK
AFSKEGLAQDRTDPKQKAKTGVGEWVKEAIARLEEQTEELEAEIETLHSG
KRKKRSEENPRVSQLKEVITRHKYHVTMLERVLRAVYNDAVTPAEASDLK
DSVDYYIESNQDPDFYEDVEMYDALNLDSTPAPQPTISKKSRGHDRERDR
DRDRDDEEENHSHSKKNPSSPRNSRGGRNSSTKSSVSNRATSPKNGRGVD
RSPTRVEPSTNRTNTVPARDTTANRGNAPLMSSVVKGNTNLKPTSTKPAA
TSSAAELGRLNNLRANDTTAPIRHPVNGARTKDAAPAGAPLNTTTQPVAP
ETTSPESAEEKLESTDPVIDELEFALAQFQEREHESGLASNNPPPRGTAP
AQTARNPAAVPSCFPSVAAPIFESEEVFARFEPDTLFFIFYYQQGTFQQY
LAARELKRQGWRFHKKYLTWFQRHEDPKVSTDEFETGTFIYFDYANVVVR
GQGSGWCQRIKSEFAFEYRFLEDELV*

mRNA from alignment at NODE_71_length_56537_cov_4.318092:53174..54904-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3813.t1 ID=Gcaud3813.t1|Name=Gcaud3813.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1731bp|location=Sequence derived from alignment at NODE_71_length_56537_cov_4.318092:53174..54904- (Gracilaria caudata M_176_S67 male)
ATGGCCAGCCGCAAGCTCCAGGGTGAAATAGACCGGGTGCTTAAGAAGGT
CGATGAGGGTGTCCAGGTCTTTGAACAGATTTGGGACAAGGTGTACAGCG
CCGCCACCACCGCCCAGAAGGAGAAGTATGAGGGCGACCTCAAGAAGGAA
ATCAAAAAGCTTCAACGCTTAAGAGACCAGATCAAGACATGGCAAGGGGA
CAGCTCCATCAAGGACAAGACAAAACTTGACGCCAACCGCAAGCTAATCG
AGGAGAAAATGGAAAAGTTCAAGATCTGCGAAAAGGAAACCAAAACAAAA
GCCTTCTCCAAGGAGGGTCTGGCGCAGGACCGCACAGACCCCAAACAAAA
GGCAAAGACCGGTGTCGGCGAGTGGGTTAAGGAGGCCATTGCTCGTTTAG
AAGAGCAGACAGAAGAGCTCGAAGCAGAAATAGAAACGCTTCACTCTGGA
AAACGGAAGAAGAGGTCAGAAGAAAATCCTCGCGTGTCGCAACTTAAGGA
AGTGATCACCCGACATAAGTATCACGTCACAATGCTTGAAAGAGTTTTAA
GAGCTGTGTACAACGATGCTGTAACACCTGCAGAAGCTTCTGATTTGAAG
GACAGTGTAGATTATTACATCGAAAGCAATCAAGACCCCGATTTTTACGA
AGATGTTGAGATGTACGATGCTCTCAATCTTGACTCAACTCCAGCACCTC
AACCAACAATATCTAAAAAGTCGCGTGGTCATGATCGTGAACGTGATCGC
GATCGTGATCGCGACGACGAGGAGGAGAATCACTCACATTCCAAGAAGAA
CCCTTCATCGCCTCGAAATAGTCGGGGTGGACGTAATAGTAGTACCAAAT
CGTCAGTTTCGAACCGCGCTACCTCCCCCAAGAATGGCAGAGGCGTCGAT
AGATCACCAACACGGGTCGAGCCGAGCACAAACCGAACCAACACCGTACC
TGCGCGAGATACAACAGCCAATCGGGGCAACGCGCCATTGATGAGTTCTG
TTGTGAAGGGTAATACAAACCTCAAGCCGACAAGTACAAAACCGGCTGCC
ACCTCGTCGGCAGCAGAGCTAGGTCGTCTAAATAACCTTCGTGCCAATGA
TACCACTGCGCCAATTCGTCATCCAGTCAATGGAGCAAGAACAAAAGATG
CAGCTCCGGCAGGAGCGCCGCTAAATACCACGACTCAGCCCGTTGCGCCC
GAAACAACAAGCCCCGAAAGCGCAGAAGAAAAGCTTGAGAGCACGGATCC
AGTTATTGACGAGCTCGAGTTTGCTTTGGCGCAGTTTCAGGAGAGAGAAC
ATGAGTCTGGCTTAGCTTCAAACAATCCGCCGCCGAGAGGAACGGCTCCG
GCGCAAACGGCTAGAAACCCAGCAGCAGTTCCTTCGTGCTTTCCGAGCGT
GGCAGCGCCAATCTTTGAGAGCGAGGAAGTATTTGCTCGTTTCGAACCAG
ATACGCTGTTCTTTATATTCTATTACCAGCAAGGTACTTTTCAACAATAT
CTTGCGGCAAGAGAGTTGAAGAGACAAGGATGGCGGTTCCACAAAAAGTA
CCTAACCTGGTTCCAGAGACACGAAGATCCGAAGGTCTCTACTGACGAAT
TCGAAACTGGAACTTTCATTTACTTTGACTATGCTAATGTGGTGGTTAGA
GGGCAAGGGAGCGGGTGGTGTCAACGGATCAAGTCAGAGTTCGCTTTTGA
GTATCGGTTCTTGGAAGACGAATTGGTTTAA

Coding sequence (CDS) from alignment at NODE_71_length_56537_cov_4.318092:53174..54904-

>Gcaud3813.t1 ID=Gcaud3813.t1|Name=Gcaud3813.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1731bp|location=Sequence derived from alignment at NODE_71_length_56537_cov_4.318092:53174..54904- (Gracilaria caudata M_176_S67 male)
ATGGCCAGCCGCAAGCTCCAGGGTGAAATAGACCGGGTGCTTAAGAAGGT
CGATGAGGGTGTCCAGGTCTTTGAACAGATTTGGGACAAGGTGTACAGCG
CCGCCACCACCGCCCAGAAGGAGAAGTATGAGGGCGACCTCAAGAAGGAA
ATCAAAAAGCTTCAACGCTTAAGAGACCAGATCAAGACATGGCAAGGGGA
CAGCTCCATCAAGGACAAGACAAAACTTGACGCCAACCGCAAGCTAATCG
AGGAGAAAATGGAAAAGTTCAAGATCTGCGAAAAGGAAACCAAAACAAAA
GCCTTCTCCAAGGAGGGTCTGGCGCAGGACCGCACAGACCCCAAACAAAA
GGCAAAGACCGGTGTCGGCGAGTGGGTTAAGGAGGCCATTGCTCGTTTAG
AAGAGCAGACAGAAGAGCTCGAAGCAGAAATAGAAACGCTTCACTCTGGA
AAACGGAAGAAGAGGTCAGAAGAAAATCCTCGCGTGTCGCAACTTAAGGA
AGTGATCACCCGACATAAGTATCACGTCACAATGCTTGAAAGAGTTTTAA
GAGCTGTGTACAACGATGCTGTAACACCTGCAGAAGCTTCTGATTTGAAG
GACAGTGTAGATTATTACATCGAAAGCAATCAAGACCCCGATTTTTACGA
AGATGTTGAGATGTACGATGCTCTCAATCTTGACTCAACTCCAGCACCTC
AACCAACAATATCTAAAAAGTCGCGTGGTCATGATCGTGAACGTGATCGC
GATCGTGATCGCGACGACGAGGAGGAGAATCACTCACATTCCAAGAAGAA
CCCTTCATCGCCTCGAAATAGTCGGGGTGGACGTAATAGTAGTACCAAAT
CGTCAGTTTCGAACCGCGCTACCTCCCCCAAGAATGGCAGAGGCGTCGAT
AGATCACCAACACGGGTCGAGCCGAGCACAAACCGAACCAACACCGTACC
TGCGCGAGATACAACAGCCAATCGGGGCAACGCGCCATTGATGAGTTCTG
TTGTGAAGGGTAATACAAACCTCAAGCCGACAAGTACAAAACCGGCTGCC
ACCTCGTCGGCAGCAGAGCTAGGTCGTCTAAATAACCTTCGTGCCAATGA
TACCACTGCGCCAATTCGTCATCCAGTCAATGGAGCAAGAACAAAAGATG
CAGCTCCGGCAGGAGCGCCGCTAAATACCACGACTCAGCCCGTTGCGCCC
GAAACAACAAGCCCCGAAAGCGCAGAAGAAAAGCTTGAGAGCACGGATCC
AGTTATTGACGAGCTCGAGTTTGCTTTGGCGCAGTTTCAGGAGAGAGAAC
ATGAGTCTGGCTTAGCTTCAAACAATCCGCCGCCGAGAGGAACGGCTCCG
GCGCAAACGGCTAGAAACCCAGCAGCAGTTCCTTCGTGCTTTCCGAGCGT
GGCAGCGCCAATCTTTGAGAGCGAGGAAGTATTTGCTCGTTTCGAACCAG
ATACGCTGTTCTTTATATTCTATTACCAGCAAGGTACTTTTCAACAATAT
CTTGCGGCAAGAGAGTTGAAGAGACAAGGATGGCGGTTCCACAAAAAGTA
CCTAACCTGGTTCCAGAGACACGAAGATCCGAAGGTCTCTACTGACGAAT
TCGAAACTGGAACTTTCATTTACTTTGACTATGCTAATGTGGTGGTTAGA
GGGCAAGGGAGCGGGTGGTGTCAACGGATCAAGTCAGAGTTCGCTTTTGA
GTATCGGTTCTTGGAAGACGAATTGGTTTAA