Gcaud788.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud788.t1
Unique Name	Gcaud788.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	233

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_7185_length_979_cov_9.002252	contig	NODE_7185_length_979_cov_9.002252:2..700 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3067.XP_002950429.1
PFAMs	AdoHcyase,AdoHcyase_NAD
Max annot lvl	3041\|Chlorophyta
KEGG rclass	RC00056,RC00069,RC01161,RC01243
KEGG ko	ko:K01251
KEGG Reaction	R00192,R04936
KEGG Pathway	ko00270,ko01100,map00270,map01100
KEGG Module	M00035
Evalue	8.95e-78
EggNOG OGs	COG0499@1\|root,KOG1370@2759\|Eukaryota,37R1E@33090\|Viridiplantae,34GWQ@3041\|Chlorophyta
EC	3.3.1.1
Description	Adenosylhomocysteinase
COG category	H
BiGG Reaction	iRC1080.CRv4_Au5_s3_g11226_t1
BRITE	ko00000,ko00001,ko00002,ko01000,ko01009,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud788	Gcaud788	Gracilaria caudata M_176_S67 male	gene	NODE_7185_length_979_cov_9.002252 2..700 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud788.t1.CDS1	Gcaud788.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_7185_length_979_cov_9.002252 2..700 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud788.t1.exon1	Gcaud788.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_7185_length_979_cov_9.002252 2..700 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud788.t1.start1	Gcaud788.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_7185_length_979_cov_9.002252 698..700 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud788.t1	Gcaud788.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_7185_length_979_cov_9.002252 2..700 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_7185_length_979_cov_9.002252:2..700-
coding sequence from alignment at NODE_7185_length_979_cov_9.002252:2..700-

mRNA sequence

>Gcaud788.t1 ID=Gcaud788.t1|Name=Gcaud788.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=233bp
MKSKIENIYGIKHSVTKGLFCALDMMVTGKTVLICGFGDVGMGCALAMKA
AGARCIVAEIDPVRALIARMEGFRVTTMEKAVSEVDMFITATGNSGVIRV
EHMLKMKKNTVVGNMGHFDREIDLESLRKYPGTNVVEVKPNVHRWVFRDG
HCITILAEGKLLNLICGTGNPSFVMSIAFTLQVLTQIYLWEERNSTKSSP
TVCVPPRAIDAQAALYHLPCIDVDLTVPANSSF

spliced messenger RNA

>Gcaud788.t1 ID=Gcaud788.t1|Name=Gcaud788.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=699bp|location=Sequence derived from alignment at NODE_7185_length_979_cov_9.002252:2..700- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGAGTAAGATCGAGAACATATATGGCATCAAGCACTCTGTTACAAA
AGGCCTTTTCTGCGCACTTGACATGATGGTGACTGGTAAAACAGTTCTCA
TTTGTGGATTTGGTGACGTGGGGATGGGTTGTGCCTTGGCTATGAAGGCG
GCCGGAGCGAGGTGTATCGTTGCGGAGATTGACCCTGTTCGGGCACTCAT
TGCAAGAATGGAAGGGTTTCGAGTTACCACTATGGAAAAGGCTGTATCGG
AAGTAGACATGTTCATAACTGCCACTGGAAACAGCGGGGTAATTCGTGTG
GAGCACATGCTGAAGATGAAGAAGAATACAGTAGTGGGAAACATGGGTCA
CTTTGATCGGGAAATCGATTTGGAGAGCTTACGAAAGTATCCAGGTACGA
ATGTGGTTGAAGTGAAGCCCAACGTTCATCGCTGGGTGTTTCGAGATGGA
CATTGTATAACAATACTGGCAGAAGGGAAGTTGCTGAACTTGATATGTGG
GACTGGGAACCCCAGCTTCGTCATGAGCATAGCTTTCACACTCCAGGTGT
TGACGCAGATTTATTTGTGGGAAGAGCGAAACTCCACGAAGAGTTCACCA
ACTGTGTGTGTTCCACCTAGAGCGATAGATGCACAAGCAGCGTTGTACCA
TCTTCCTTGCATTGACGTTGACCTCACTGTGCCAGCGAATAGCTCCTTT

protein sequence of Gcaud788.t1

>Gcaud788.t1 ID=Gcaud788.t1|Name=Gcaud788.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=233bp
MKSKIENIYGIKHSVTKGLFCALDMMVTGKTVLICGFGDVGMGCALAMKA
AGARCIVAEIDPVRALIARMEGFRVTTMEKAVSEVDMFITATGNSGVIRV
EHMLKMKKNTVVGNMGHFDREIDLESLRKYPGTNVVEVKPNVHRWVFRDG
HCITILAEGKLLNLICGTGNPSFVMSIAFTLQVLTQIYLWEERNSTKSSP
TVCVPPRAIDAQAALYHLPCIDVDLTVPANSSF

mRNA from alignment at NODE_7185_length_979_cov_9.002252:2..700-

Legend: CDSpolypeptideexonstart_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud788.t1 ID=Gcaud788.t1|Name=Gcaud788.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=699bp|location=Sequence derived from alignment at NODE_7185_length_979_cov_9.002252:2..700- (Gracilaria caudata M_176_S67 male)
ATGAAGAGTAAGATCGAGAACATATATGGCATCAAGCACTCTGTTACAAA
AGGCCTTTTCTGCGCACTTGACATGATGGTGACTGGTAAAACAGTTCTCA
TTTGTGGATTTGGTGACGTGGGGATGGGTTGTGCCTTGGCTATGAAGGCG
GCCGGAGCGAGGTGTATCGTTGCGGAGATTGACCCTGTTCGGGCACTCAT
TGCAAGAATGGAAGGGTTTCGAGTTACCACTATGGAAAAGGCTGTATCGG
AAGTAGACATGTTCATAACTGCCACTGGAAACAGCGGGGTAATTCGTGTG
GAGCACATGCTGAAGATGAAGAAGAATACAGTAGTGGGAAACATGGGTCA
CTTTGATCGGGAAATCGATTTGGAGAGCTTACGAAAGTATCCAGGTACGA
ATGTGGTTGAAGTGAAGCCCAACGTTCATCGCTGGGTGTTTCGAGATGGA
CATTGTATAACAATACTGGCAGAAGGGAAGTTGCTGAACTTGATATGTGG
GACTGGGAACCCCAGCTTCGTCATGAGCATAGCTTTCACACTCCAGGTGT
TGACGCAGATTTATTTGTGGGAAGAGCGAAACTCCACGAAGAGTTCACCA
ACTGTGTGTGTTCCACCTAGAGCGATAGATGCACAAGCAGCGTTGTACCA
TCTTCCTTGCATTGACGTTGACCTCACTGTGCCAGCGAATAGCTCCTTT

Coding sequence (CDS) from alignment at NODE_7185_length_979_cov_9.002252:2..700-

>Gcaud788.t1 ID=Gcaud788.t1|Name=Gcaud788.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=699bp|location=Sequence derived from alignment at NODE_7185_length_979_cov_9.002252:2..700- (Gracilaria caudata M_176_S67 male)
ATGAAGAGTAAGATCGAGAACATATATGGCATCAAGCACTCTGTTACAAA
AGGCCTTTTCTGCGCACTTGACATGATGGTGACTGGTAAAACAGTTCTCA
TTTGTGGATTTGGTGACGTGGGGATGGGTTGTGCCTTGGCTATGAAGGCG
GCCGGAGCGAGGTGTATCGTTGCGGAGATTGACCCTGTTCGGGCACTCAT
TGCAAGAATGGAAGGGTTTCGAGTTACCACTATGGAAAAGGCTGTATCGG
AAGTAGACATGTTCATAACTGCCACTGGAAACAGCGGGGTAATTCGTGTG
GAGCACATGCTGAAGATGAAGAAGAATACAGTAGTGGGAAACATGGGTCA
CTTTGATCGGGAAATCGATTTGGAGAGCTTACGAAAGTATCCAGGTACGA
ATGTGGTTGAAGTGAAGCCCAACGTTCATCGCTGGGTGTTTCGAGATGGA
CATTGTATAACAATACTGGCAGAAGGGAAGTTGCTGAACTTGATATGTGG
GACTGGGAACCCCAGCTTCGTCATGAGCATAGCTTTCACACTCCAGGTGT
TGACGCAGATTTATTTGTGGGAAGAGCGAAACTCCACGAAGAGTTCACCA
ACTGTGTGTGTTCCACCTAGAGCGATAGATGCACAAGCAGCGTTGTACCA
TCTTCCTTGCATTGACGTTGACCTCACTGTGCCAGCGAATAGCTCCTTT