Gcaud7300.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud7300.t1
Unique NameGcaud7300.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length556
Homology
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BLAST of Gcaud7300.t1 vs. uniprot
Match: A0A2V3J391_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J391_9FLOR)

HSP 1 Score: 156 bits (394), Expect = 9.710e-38
Identity = 81/174 (46.55%), Postives = 107/174 (61.49%), Query Frame = 0 
Query:  378 HTVAPHHSVEPRSLDDSAQWIGVEESKPILSRTFRIPKSCSSCRSHVCLCENKLDALTKETANVQSTMGFNVRRGSNIHYTTENGGFGDIKFGIRTCSDGVMVGELTICPRSATGSRRTSGQKEWYILLRGFLILEVEDSTIHLREGDEVEFEGNTVFQLRNPCLRATDLLCFL 551
            H + PH  V+  +           E+ P+        K+CS C    C C      + +ET   +S   F VRRGS + Y TE   FG +K GIR   DG+M+GELT+ P S+TG R+T+G +E+Y +L G+L+L+VED+T+HLR GDEVEF  +TVFQLRNPCLRATDL CFL
Sbjct:  373 HLLHPHAPVQESN----------SEALPVEPVCIENRKNCSLCSCETCTC------IERETNTEKSRRAFTVRRGSQMTYNTERDVFGMMKLGIRMSEDGIMLGELTLFPMSSTGRRKTTGHREYYFVLSGYLVLDVEDTTLHLRRGDEVEFCEDTVFQLRNPCLRATDLFCFL 530
The following BLAST results are available for this feature:
BLAST of Gcaud7300.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3J391_9FLOR9.710e-3846.55Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014710RmlC-like jelly roll foldGENE3D2.60.120.10Jelly Rollscoord: 453..551
e-value: 6.4E-6
score: 27.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 161..270
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 326..343
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..308
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 271..285
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 79..127
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 326..352
IPR011051RmlC-like cupin domain superfamilySUPERFAMILY51182RmlC-like cupinscoord: 475..549

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_716_length_19192_cov_4.213758contigNODE_716_length_19192_cov_4.213758:6171..7838 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7300.t1Gcaud7300.t1Gracilaria caudata M_176_S67 malemRNANODE_716_length_19192_cov_4.213758 6171..7838 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud7300.t1 ID=Gcaud7300.t1|Name=Gcaud7300.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=556bp
MGATRKHKTTHESRSPENVLRRRSTRTRRSPPQWWKEGSGRPESKDVNVV
RILPSGFSNTTRRTAKKHAPRSNQRHKPRLQESFQSGSKDIVESDISPTA
TDDDGPSAGVNCTSAYEGESESQPDPSSAGEHGVLEERGTISGETPSIDV
AHAETRALDPTAVHLQQSTLETSRFQKTATESKTQNDGLLLAGESKSITA
KNNTLEKAEQNGFKIQRRSTSPISSQLPTGHSGETSCNDHRSSKMPSSAQ
LNSSSSSLCEQPNSKDSNGSVLEMKRGHETKAGPVEELLSRGSPEGRSSP
LSANVSQNLPRHEVVAGVVFQFPERSESDEIMHNEDHRSPRKQTSPQLNR
RGYRLAKQVRKETQNPSRLSPKMLNTAHTVAPHHSVEPRSLDDSAQWIGV
EESKPILSRTFRIPKSCSSCRSHVCLCENKLDALTKETANVQSTMGFNVR
RGSNIHYTTENGGFGDIKFGIRTCSDGVMVGELTICPRSATGSRRTSGQK
EWYILLRGFLILEVEDSTIHLREGDEVEFEGNTVFQLRNPCLRATDLLCF
LLWSR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014710RmlC-like_jellyroll
IPR011051RmlC_Cupin_sf