Gcaud212.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud212.t1
Unique Name	Gcaud212.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	314

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_7138_length_990_cov_3.070078	contig	NODE_7138_length_990_cov_3.070078:2..942 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud212	Gcaud212	Gracilaria caudata M_176_S67 male	gene	NODE_7138_length_990_cov_3.070078 2..942 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud212.t1.CDS1	Gcaud212.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_7138_length_990_cov_3.070078 2..942 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud212.t1.exon1	Gcaud212.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_7138_length_990_cov_3.070078 2..942 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud212.t1.start1	Gcaud212.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_7138_length_990_cov_3.070078 940..942 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud212.t1	Gcaud212.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_7138_length_990_cov_3.070078 2..942 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_7138_length_990_cov_3.070078:2..942-
coding sequence from alignment at NODE_7138_length_990_cov_3.070078:2..942-

mRNA sequence

>Gcaud212.t1 ID=Gcaud212.t1|Name=Gcaud212.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=314bp
LSSSARADAADGDEHDDIAFKEDVVGSAFIIAAALALIVIVHILALKIRL
VYWHLTKNPRIYYAHVRAMAASSAELPDLDGLTADSRQRASSLPASSQSP
MSLSSPNPHHATAILAHPSSAPAAASSAYGNAGSSGQSVEGRMWDGMERR
PGAAAQTAGKKSRPGVSFGEPTVIESAVAAYNSSSREEQDVETGAVQTSQ
DSGVGEEGLDAGALDMESVHTNGARSDDSKDAALQSELLRHKSLTVTSPT
LAKNREEVEQARQTTVREYPWVVTKLMPRLGRQASGAEKLLWFGSHHFFF
WCVQFSLFFSTVLX

spliced messenger RNA

>Gcaud212.t1 ID=Gcaud212.t1|Name=Gcaud212.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=941bp|location=Sequence derived from alignment at NODE_7138_length_990_cov_3.070078:2..942- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
TTGTCCAGCAGCGCTCGCGCCGACGCCGCCGATGGCGATGAGCACGACGA
CATCGCCTTCAAGGAAGACGTGGTCGGCTCCGCGTTCATCATCGCCGCCG
CGCTCGCGCTCATCGTCATTGTGCATATCCTCGCGTTGAAGATTCGCCTC
GTGTACTGGCACCTCACCAAGAACCCGCGCATCTACTACGCGCACGTGCG
CGCAATGGCCGCCAGCTCCGCGGAACTCCCAGACCTGGACGGGCTGACGG
CCGACTCTCGTCAACGAGCCAGCAGTTTGCCCGCGAGCAGTCAGAGCCCA
ATGTCGCTGAGCAGCCCAAACCCGCACCACGCCACAGCCATCCTTGCTCA
CCCGTCCTCAGCGCCTGCCGCCGCTTCAAGTGCTTATGGGAACGCTGGCA
GTAGTGGGCAGTCCGTAGAGGGCCGTATGTGGGACGGTATGGAGCGACGA
CCAGGGGCTGCTGCGCAAACAGCCGGCAAGAAATCGCGCCCCGGGGTGTC
GTTTGGTGAGCCTACCGTCATCGAATCGGCCGTCGCGGCATACAATAGTT
CTAGCCGTGAAGAGCAAGACGTGGAGACCGGAGCGGTTCAGACGTCACAG
GATTCAGGTGTTGGCGAGGAAGGACTTGATGCCGGTGCGCTGGACATGGA
AAGTGTGCACACCAATGGCGCGAGATCAGATGACAGTAAGGACGCAGCTC
TGCAAAGTGAGTTATTGCGGCACAAGTCGCTCACAGTGACGAGCCCCACG
CTCGCGAAGAACAGGGAAGAGGTGGAGCAGGCGAGGCAGACTACGGTGAG
GGAGTACCCGTGGGTGGTGACCAAACTGATGCCGAGATTGGGGCGGCAGG
CAAGCGGCGCGGAGAAGCTGCTCTGGTTCGGATCGCACCATTTCTTTTTC
TGGTGCGTGCAGTTCTCGCTGTTCTTCTCCACGGTGCTGAT

protein sequence of Gcaud212.t1

>Gcaud212.t1 ID=Gcaud212.t1|Name=Gcaud212.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=314bp
LSSSARADAADGDEHDDIAFKEDVVGSAFIIAAALALIVIVHILALKIRL
VYWHLTKNPRIYYAHVRAMAASSAELPDLDGLTADSRQRASSLPASSQSP
MSLSSPNPHHATAILAHPSSAPAAASSAYGNAGSSGQSVEGRMWDGMERR
PGAAAQTAGKKSRPGVSFGEPTVIESAVAAYNSSSREEQDVETGAVQTSQ
DSGVGEEGLDAGALDMESVHTNGARSDDSKDAALQSELLRHKSLTVTSPT
LAKNREEVEQARQTTVREYPWVVTKLMPRLGRQASGAEKLLWFGSHHFFF
WCVQFSLFFSTVLX

mRNA from alignment at NODE_7138_length_990_cov_3.070078:2..942-

Legend: CDSpolypeptideexonstart_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud212.t1 ID=Gcaud212.t1|Name=Gcaud212.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=941bp|location=Sequence derived from alignment at NODE_7138_length_990_cov_3.070078:2..942- (Gracilaria caudata M_176_S67 male)
TTGTCCAGCAGCGCTCGCGCCGACGCCGCCGATGGCGATGAGCACGACGA
CATCGCCTTCAAGGAAGACGTGGTCGGCTCCGCGTTCATCATCGCCGCCG
CGCTCGCGCTCATCGTCATTGTGCATATCCTCGCGTTGAAGATTCGCCTC
GTGTACTGGCACCTCACCAAGAACCCGCGCATCTACTACGCGCACGTGCG
CGCAATGGCCGCCAGCTCCGCGGAACTCCCAGACCTGGACGGGCTGACGG
CCGACTCTCGTCAACGAGCCAGCAGTTTGCCCGCGAGCAGTCAGAGCCCA
ATGTCGCTGAGCAGCCCAAACCCGCACCACGCCACAGCCATCCTTGCTCA
CCCGTCCTCAGCGCCTGCCGCCGCTTCAAGTGCTTATGGGAACGCTGGCA
GTAGTGGGCAGTCCGTAGAGGGCCGTATGTGGGACGGTATGGAGCGACGA
CCAGGGGCTGCTGCGCAAACAGCCGGCAAGAAATCGCGCCCCGGGGTGTC
GTTTGGTGAGCCTACCGTCATCGAATCGGCCGTCGCGGCATACAATAGTT
CTAGCCGTGAAGAGCAAGACGTGGAGACCGGAGCGGTTCAGACGTCACAG
GATTCAGGTGTTGGCGAGGAAGGACTTGATGCCGGTGCGCTGGACATGGA
AAGTGTGCACACCAATGGCGCGAGATCAGATGACAGTAAGGACGCAGCTC
TGCAAAGTGAGTTATTGCGGCACAAGTCGCTCACAGTGACGAGCCCCACG
CTCGCGAAGAACAGGGAAGAGGTGGAGCAGGCGAGGCAGACTACGGTGAG
GGAGTACCCGTGGGTGGTGACCAAACTGATGCCGAGATTGGGGCGGCAGG
CAAGCGGCGCGGAGAAGCTGCTCTGGTTCGGATCGCACCATTTCTTTTTC
TGGTGCGTGCAGTTCTCGCTGTTCTTCTCCACGGTGCTGAT

Coding sequence (CDS) from alignment at NODE_7138_length_990_cov_3.070078:2..942-

>Gcaud212.t1 ID=Gcaud212.t1|Name=Gcaud212.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=941bp|location=Sequence derived from alignment at NODE_7138_length_990_cov_3.070078:2..942- (Gracilaria caudata M_176_S67 male)
TTGTCCAGCAGCGCTCGCGCCGACGCCGCCGATGGCGATGAGCACGACGA
CATCGCCTTCAAGGAAGACGTGGTCGGCTCCGCGTTCATCATCGCCGCCG
CGCTCGCGCTCATCGTCATTGTGCATATCCTCGCGTTGAAGATTCGCCTC
GTGTACTGGCACCTCACCAAGAACCCGCGCATCTACTACGCGCACGTGCG
CGCAATGGCCGCCAGCTCCGCGGAACTCCCAGACCTGGACGGGCTGACGG
CCGACTCTCGTCAACGAGCCAGCAGTTTGCCCGCGAGCAGTCAGAGCCCA
ATGTCGCTGAGCAGCCCAAACCCGCACCACGCCACAGCCATCCTTGCTCA
CCCGTCCTCAGCGCCTGCCGCCGCTTCAAGTGCTTATGGGAACGCTGGCA
GTAGTGGGCAGTCCGTAGAGGGCCGTATGTGGGACGGTATGGAGCGACGA
CCAGGGGCTGCTGCGCAAACAGCCGGCAAGAAATCGCGCCCCGGGGTGTC
GTTTGGTGAGCCTACCGTCATCGAATCGGCCGTCGCGGCATACAATAGTT
CTAGCCGTGAAGAGCAAGACGTGGAGACCGGAGCGGTTCAGACGTCACAG
GATTCAGGTGTTGGCGAGGAAGGACTTGATGCCGGTGCGCTGGACATGGA
AAGTGTGCACACCAATGGCGCGAGATCAGATGACAGTAAGGACGCAGCTC
TGCAAAGTGAGTTATTGCGGCACAAGTCGCTCACAGTGACGAGCCCCACG
CTCGCGAAGAACAGGGAAGAGGTGGAGCAGGCGAGGCAGACTACGGTGAG
GGAGTACCCGTGGGTGGTGACCAAACTGATGCCGAGATTGGGGCGGCAGG
CAAGCGGCGCGGAGAAGCTGCTCTGGTTCGGATCGCACCATTTCTTTTTC
TGGTGCGTGCAGTTCTCGCTGTTCTTCTCCACGGTGCTGAT