Gcaud9501.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud9501.t1
Unique NameGcaud9501.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length151
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_69_length_56878_cov_4.412084contigNODE_69_length_56878_cov_4.412084:9545..9997 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog65071.PYU1_T014264
PFAMsHD_3
Max annot lvl121069|Pythiales
Evalue4.14e-38
EggNOG OGsCOG1896@1|root,KOG3197@2759|Eukaryota,1MAQ5@121069|Pythiales
DescriptionHDDC2 protein. Source PGD
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9501Gcaud9501Gracilaria caudata M_176_S67 malegeneNODE_69_length_56878_cov_4.412084 9545..9997 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9501.t1.stop1Gcaud9501.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_69_length_56878_cov_4.412084 9545..9547 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9501.t1.CDS1Gcaud9501.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_69_length_56878_cov_4.412084 9545..9997 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9501.t1.exon1Gcaud9501.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_69_length_56878_cov_4.412084 9545..9997 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9501.t1.start1Gcaud9501.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_69_length_56878_cov_4.412084 9995..9997 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9501.t1Gcaud9501.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_69_length_56878_cov_4.412084 9545..9997 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud9501.t1 ID=Gcaud9501.t1|Name=Gcaud9501.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=151bp
MYRMALIAFTIPHKNRDHLIRMALVHDLAECIVGDITPHDNVPKEDKRQM
EDDAMRHIRDDILKGSQAGIEMYELWKEYEDGTSEEAKLMKDIDKFEMIL
QADEYERGQGIQLQEFFDSTRDIFKTKIMNDLDRELREDRDRNAASANNE
*
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spliced messenger RNA

>Gcaud9501.t1 ID=Gcaud9501.t1|Name=Gcaud9501.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=453bp|location=Sequence derived from alignment at NODE_69_length_56878_cov_4.412084:9545..9997- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTATCGCATGGCACTGATAGCCTTCACAATACCGCATAAAAACCGAGA
CCACTTGATCCGAATGGCTTTGGTGCACGATCTGGCTGAATGTATCGTAG
GCGATATAACGCCTCATGATAACGTCCCAAAAGAAGATAAACGTCAAATG
GAAGATGACGCGATGCGTCATATCCGTGATGACATTCTGAAAGGTAGTCA
AGCTGGTATCGAAATGTACGAATTGTGGAAAGAGTATGAAGATGGTACCT
CTGAAGAGGCAAAGCTCATGAAGGACATCGATAAGTTCGAAATGATTTTG
CAAGCCGATGAATACGAGCGTGGTCAGGGCATTCAACTTCAAGAGTTCTT
CGATAGCACGAGAGATATCTTTAAAACCAAAATTATGAATGACCTTGACA
GAGAGCTTCGCGAAGATCGAGACAGAAACGCTGCTTCGGCAAACAACGAA
TGA
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protein sequence of Gcaud9501.t1

>Gcaud9501.t1 ID=Gcaud9501.t1|Name=Gcaud9501.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=151bp
MYRMALIAFTIPHKNRDHLIRMALVHDLAECIVGDITPHDNVPKEDKRQM
EDDAMRHIRDDILKGSQAGIEMYELWKEYEDGTSEEAKLMKDIDKFEMIL
QADEYERGQGIQLQEFFDSTRDIFKTKIMNDLDRELREDRDRNAASANNE
*
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mRNA from alignment at NODE_69_length_56878_cov_4.412084:9545..9997-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud9501.t1 ID=Gcaud9501.t1|Name=Gcaud9501.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=453bp|location=Sequence derived from alignment at NODE_69_length_56878_cov_4.412084:9545..9997- (Gracilaria caudata M_176_S67 male)
ATGTATCGCATGGCACTGATAGCCTTCACAATACCGCATAAAAACCGAGA
CCACTTGATCCGAATGGCTTTGGTGCACGATCTGGCTGAATGTATCGTAG
GCGATATAACGCCTCATGATAACGTCCCAAAAGAAGATAAACGTCAAATG
GAAGATGACGCGATGCGTCATATCCGTGATGACATTCTGAAAGGTAGTCA
AGCTGGTATCGAAATGTACGAATTGTGGAAAGAGTATGAAGATGGTACCT
CTGAAGAGGCAAAGCTCATGAAGGACATCGATAAGTTCGAAATGATTTTG
CAAGCCGATGAATACGAGCGTGGTCAGGGCATTCAACTTCAAGAGTTCTT
CGATAGCACGAGAGATATCTTTAAAACCAAAATTATGAATGACCTTGACA
GAGAGCTTCGCGAAGATCGAGACAGAAACGCTGCTTCGGCAAACAACGAA
TGA
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Coding sequence (CDS) from alignment at NODE_69_length_56878_cov_4.412084:9545..9997-

>Gcaud9501.t1 ID=Gcaud9501.t1|Name=Gcaud9501.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=453bp|location=Sequence derived from alignment at NODE_69_length_56878_cov_4.412084:9545..9997- (Gracilaria caudata M_176_S67 male)
ATGTATCGCATGGCACTGATAGCCTTCACAATACCGCATAAAAACCGAGA
CCACTTGATCCGAATGGCTTTGGTGCACGATCTGGCTGAATGTATCGTAG
GCGATATAACGCCTCATGATAACGTCCCAAAAGAAGATAAACGTCAAATG
GAAGATGACGCGATGCGTCATATCCGTGATGACATTCTGAAAGGTAGTCA
AGCTGGTATCGAAATGTACGAATTGTGGAAAGAGTATGAAGATGGTACCT
CTGAAGAGGCAAAGCTCATGAAGGACATCGATAAGTTCGAAATGATTTTG
CAAGCCGATGAATACGAGCGTGGTCAGGGCATTCAACTTCAAGAGTTCTT
CGATAGCACGAGAGATATCTTTAAAACCAAAATTATGAATGACCTTGACA
GAGAGCTTCGCGAAGATCGAGACAGAAACGCTGCTTCGGCAAACAACGAA
TGA
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