Gcaud9510.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud9510.t1
Unique NameGcaud9510.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length811
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_69_length_56878_cov_4.412084contigNODE_69_length_56878_cov_4.412084:27566..29998 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708884.1
PFAMsNa_H_Exchanger,TrkA_N
Max annot lvl2759|Eukaryota
Evalue1.98e-232
EggNOG OGsCOG0475@1|root,KOG1650@2759|Eukaryota
Descriptionsolute:proton antiporter activity
COG categoryP
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9510Gcaud9510Gracilaria caudata M_176_S67 malegeneNODE_69_length_56878_cov_4.412084 27566..29998 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9510.t1.start1Gcaud9510.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_69_length_56878_cov_4.412084 27566..27568 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9510.t1.CDS1Gcaud9510.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_69_length_56878_cov_4.412084 27566..29998 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9510.t1.exon1Gcaud9510.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_69_length_56878_cov_4.412084 27566..29998 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9510.t1.stop1Gcaud9510.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_69_length_56878_cov_4.412084 29996..29998 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9510.t1Gcaud9510.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_69_length_56878_cov_4.412084 27566..29998 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud9510.t1 ID=Gcaud9510.t1|Name=Gcaud9510.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=811bp
MPAPAPVAFVAAFPLRRSRIQPCVQRHHSRLRAQCSSTPPSGPRAANGAW
RRALAAAAVAVQMLRPMPLRALQTPEVRGEGAVASARLSRRVIVADAIAV
APVIDTVADESEEQQIDSTQSLLGSLPARIERLRLSLLSLVQHSHDSHQH
AVNDALVLLIATVIIIPLARRFGISPILGFLAAGVALGPNGFALVNDVRT
TKALAELGVVFFLFEMGLELSTSKLNSLRADVFGLGTAQFFITGAIITAS
AIAAGITSQAAIVVGAALALSSSAFVLQLLSERGEVGTRFGRAAFGILLF
QDLVVVPVLVLIPLLAGSGAPAAVWRAISVASVKALLALAFIIFMGNNAL
QPVFRFVARARSPEAFIAVILLTVLGTSSLTQMLGLSDTLGAFLAGVMLA
ETKFRHQVEADIQPFRGLLLGLFFMTVGFSIDLNLAWANLSKVVSLVSGL
LAIKASVIAAAGVTFGLSVGSALRTGLLLSQGGEFAFVIFGLGLSVGVLP
ADLSQLLLLVVAISMAVTPLLAAIGRQISTRLEKKRGLIGVRMEDADTAD
ARDFVMVAGWGRVGQSVCEMLDAKLVRYMAFDMSPTRVIDARNKGLPVFF
GDASRPEVLRAAGVERARAVVVTLDDPEQALRAVQNIRREFEGVKVFCRA
RDAKHQKLLQAAGATAIVPELLEASLLLGGAVLLDYGTPLDEVNSLVEEA
RSENLSEIGVSDDVTATIGSTFRESRSRALREQEQKHAEPEVEEEDESEE
PELPLEPDVKSEDIPIVSTATDATEDIYEPAEQVSVPVEDGVLQGKKTVV
VEDPDSDSVR*
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spliced messenger RNA

>Gcaud9510.t1 ID=Gcaud9510.t1|Name=Gcaud9510.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2433bp|location=Sequence derived from alignment at NODE_69_length_56878_cov_4.412084:27566..29998+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGGCCCCCGCCCCCGTGGCCTTCGTCGCCGCGTTCCCTCTACGTCG
CTCGCGCATCCAGCCTTGCGTGCAGCGTCATCACTCTCGACTGCGAGCGC
AGTGCTCCTCCACGCCGCCTTCGGGCCCACGCGCTGCGAACGGCGCATGG
AGACGAGCGCTTGCGGCGGCGGCGGTCGCCGTGCAGATGTTGCGTCCGAT
GCCGTTGCGCGCCTTGCAGACGCCGGAGGTCCGTGGAGAGGGCGCTGTGG
CTTCTGCCCGTTTGTCCAGACGCGTCATTGTGGCTGATGCGATTGCCGTT
GCGCCGGTGATTGATACCGTTGCCGATGAGAGCGAGGAGCAACAAATAGA
CTCGACGCAGTCGCTGCTTGGTTCGCTTCCGGCGCGGATCGAGCGTCTTC
GATTGTCGTTACTTTCATTAGTTCAACATTCCCACGATTCGCATCAACAC
GCTGTCAACGACGCGCTTGTGTTGCTCATTGCTACCGTCATTATCATCCC
GTTAGCACGCCGCTTCGGTATCTCGCCCATTCTTGGCTTTCTTGCCGCCG
GTGTGGCGTTGGGCCCGAATGGATTTGCGCTCGTCAATGATGTGCGCACC
ACAAAGGCGCTTGCTGAACTCGGTGTCGTATTTTTTCTCTTCGAGATGGG
TTTGGAACTCTCCACATCCAAGCTCAACTCGCTACGAGCTGACGTGTTCG
GGTTGGGCACTGCACAGTTCTTCATCACGGGAGCCATTATCACCGCCTCT
GCTATTGCCGCGGGCATCACCTCCCAGGCTGCTATTGTTGTCGGTGCCGC
TTTGGCCCTTAGTTCCAGCGCATTTGTGCTTCAACTCCTCTCTGAGCGTG
GTGAAGTTGGTACTCGATTCGGTCGCGCCGCCTTTGGTATCCTCTTGTTT
CAGGACCTTGTAGTAGTTCCGGTCCTTGTCCTCATCCCTCTACTTGCCGG
CTCGGGAGCTCCAGCCGCTGTGTGGCGCGCTATAAGTGTCGCTAGTGTCA
AGGCTTTGCTTGCCCTTGCTTTTATCATCTTTATGGGCAACAACGCCTTG
CAACCTGTTTTTCGCTTTGTCGCGCGCGCTAGGAGCCCGGAGGCCTTCAT
TGCTGTAATCCTTCTCACCGTGCTGGGTACGTCTTCCCTCACACAAATGC
TCGGCTTGAGTGACACCCTTGGAGCCTTTTTGGCAGGCGTTATGCTTGCA
GAAACCAAGTTTCGACATCAAGTCGAAGCAGATATCCAGCCGTTCCGAGG
TCTCTTACTTGGTTTGTTCTTCATGACTGTAGGCTTTTCAATTGATCTCA
ATCTTGCATGGGCCAATTTAAGCAAGGTGGTATCCCTAGTATCTGGACTG
CTGGCAATCAAGGCTAGCGTTATCGCAGCCGCTGGTGTTACTTTTGGGTT
AAGTGTTGGATCTGCTCTGCGAACTGGACTGCTCCTTTCGCAAGGAGGAG
AGTTTGCTTTTGTTATTTTCGGCCTGGGGCTATCAGTTGGCGTGTTGCCC
GCTGATCTGAGTCAGTTGCTTCTCCTCGTTGTGGCCATTTCTATGGCCGT
GACACCGCTTCTGGCGGCAATCGGACGACAAATATCAACCCGACTGGAGA
AAAAGAGAGGGCTTATTGGGGTGCGTATGGAGGATGCTGACACCGCTGAC
GCTCGAGATTTTGTAATGGTAGCTGGCTGGGGTCGCGTTGGTCAGTCTGT
TTGCGAAATGCTTGATGCCAAACTTGTGAGGTATATGGCATTCGATATGT
CTCCGACCCGAGTCATTGACGCGCGTAATAAGGGCTTACCGGTCTTCTTT
GGAGACGCCTCACGCCCTGAAGTTTTGCGTGCGGCAGGTGTTGAGAGAGC
CCGTGCGGTTGTTGTCACACTTGATGATCCTGAACAGGCGTTGAGAGCTG
TTCAGAACATCCGCCGAGAATTTGAAGGAGTCAAAGTTTTCTGTCGCGCT
CGCGATGCCAAACATCAGAAACTGTTGCAGGCTGCTGGAGCCACTGCCAT
CGTTCCTGAACTACTGGAGGCTTCACTTCTCCTAGGGGGGGCTGTTCTCC
TGGACTATGGAACACCTTTAGATGAAGTTAACTCTTTGGTTGAGGAGGCA
AGATCGGAGAACCTCTCTGAGATTGGGGTGTCTGATGATGTAACTGCCAC
AATTGGATCTACATTCAGAGAGTCGAGATCGCGGGCACTTCGTGAACAAG
AGCAGAAGCACGCAGAACCTGAAGTAGAGGAAGAGGACGAGAGCGAAGAA
CCCGAACTTCCCCTTGAACCTGATGTGAAGAGTGAGGATATTCCAATCGT
ATCAACCGCCACTGACGCCACAGAGGACATCTACGAACCTGCCGAGCAAG
TAAGCGTCCCCGTTGAGGATGGAGTTCTTCAAGGAAAGAAGACCGTTGTT
GTTGAGGACCCGGATTCAGATTCTGTCCGGTGA
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protein sequence of Gcaud9510.t1

>Gcaud9510.t1 ID=Gcaud9510.t1|Name=Gcaud9510.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=811bp
MPAPAPVAFVAAFPLRRSRIQPCVQRHHSRLRAQCSSTPPSGPRAANGAW
RRALAAAAVAVQMLRPMPLRALQTPEVRGEGAVASARLSRRVIVADAIAV
APVIDTVADESEEQQIDSTQSLLGSLPARIERLRLSLLSLVQHSHDSHQH
AVNDALVLLIATVIIIPLARRFGISPILGFLAAGVALGPNGFALVNDVRT
TKALAELGVVFFLFEMGLELSTSKLNSLRADVFGLGTAQFFITGAIITAS
AIAAGITSQAAIVVGAALALSSSAFVLQLLSERGEVGTRFGRAAFGILLF
QDLVVVPVLVLIPLLAGSGAPAAVWRAISVASVKALLALAFIIFMGNNAL
QPVFRFVARARSPEAFIAVILLTVLGTSSLTQMLGLSDTLGAFLAGVMLA
ETKFRHQVEADIQPFRGLLLGLFFMTVGFSIDLNLAWANLSKVVSLVSGL
LAIKASVIAAAGVTFGLSVGSALRTGLLLSQGGEFAFVIFGLGLSVGVLP
ADLSQLLLLVVAISMAVTPLLAAIGRQISTRLEKKRGLIGVRMEDADTAD
ARDFVMVAGWGRVGQSVCEMLDAKLVRYMAFDMSPTRVIDARNKGLPVFF
GDASRPEVLRAAGVERARAVVVTLDDPEQALRAVQNIRREFEGVKVFCRA
RDAKHQKLLQAAGATAIVPELLEASLLLGGAVLLDYGTPLDEVNSLVEEA
RSENLSEIGVSDDVTATIGSTFRESRSRALREQEQKHAEPEVEEEDESEE
PELPLEPDVKSEDIPIVSTATDATEDIYEPAEQVSVPVEDGVLQGKKTVV
VEDPDSDSVR*
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mRNA from alignment at NODE_69_length_56878_cov_4.412084:27566..29998+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud9510.t1 ID=Gcaud9510.t1|Name=Gcaud9510.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2433bp|location=Sequence derived from alignment at NODE_69_length_56878_cov_4.412084:27566..29998+ (Gracilaria caudata M_176_S67 male)
ATGCCGGCCCCCGCCCCCGTGGCCTTCGTCGCCGCGTTCCCTCTACGTCG CTCGCGCATCCAGCCTTGCGTGCAGCGTCATCACTCTCGACTGCGAGCGC AGTGCTCCTCCACGCCGCCTTCGGGCCCACGCGCTGCGAACGGCGCATGG AGACGAGCGCTTGCGGCGGCGGCGGTCGCCGTGCAGATGTTGCGTCCGAT GCCGTTGCGCGCCTTGCAGACGCCGGAGGTCCGTGGAGAGGGCGCTGTGG CTTCTGCCCGTTTGTCCAGACGCGTCATTGTGGCTGATGCGATTGCCGTT GCGCCGGTGATTGATACCGTTGCCGATGAGAGCGAGGAGCAACAAATAGA CTCGACGCAGTCGCTGCTTGGTTCGCTTCCGGCGCGGATCGAGCGTCTTC GATTGTCGTTACTTTCATTAGTTCAACATTCCCACGATTCGCATCAACAC GCTGTCAACGACGCGCTTGTGTTGCTCATTGCTACCGTCATTATCATCCC GTTAGCACGCCGCTTCGGTATCTCGCCCATTCTTGGCTTTCTTGCCGCCG GTGTGGCGTTGGGCCCGAATGGATTTGCGCTCGTCAATGATGTGCGCACC ACAAAGGCGCTTGCTGAACTCGGTGTCGTATTTTTTCTCTTCGAGATGGG TTTGGAACTCTCCACATCCAAGCTCAACTCGCTACGAGCTGACGTGTTCG GGTTGGGCACTGCACAGTTCTTCATCACGGGAGCCATTATCACCGCCTCT GCTATTGCCGCGGGCATCACCTCCCAGGCTGCTATTGTTGTCGGTGCCGC TTTGGCCCTTAGTTCCAGCGCATTTGTGCTTCAACTCCTCTCTGAGCGTG GTGAAGTTGGTACTCGATTCGGTCGCGCCGCCTTTGGTATCCTCTTGTTT CAGGACCTTGTAGTAGTTCCGGTCCTTGTCCTCATCCCTCTACTTGCCGG CTCGGGAGCTCCAGCCGCTGTGTGGCGCGCTATAAGTGTCGCTAGTGTCA AGGCTTTGCTTGCCCTTGCTTTTATCATCTTTATGGGCAACAACGCCTTG CAACCTGTTTTTCGCTTTGTCGCGCGCGCTAGGAGCCCGGAGGCCTTCAT TGCTGTAATCCTTCTCACCGTGCTGGGTACGTCTTCCCTCACACAAATGC TCGGCTTGAGTGACACCCTTGGAGCCTTTTTGGCAGGCGTTATGCTTGCA GAAACCAAGTTTCGACATCAAGTCGAAGCAGATATCCAGCCGTTCCGAGG TCTCTTACTTGGTTTGTTCTTCATGACTGTAGGCTTTTCAATTGATCTCA ATCTTGCATGGGCCAATTTAAGCAAGGTGGTATCCCTAGTATCTGGACTG CTGGCAATCAAGGCTAGCGTTATCGCAGCCGCTGGTGTTACTTTTGGGTT AAGTGTTGGATCTGCTCTGCGAACTGGACTGCTCCTTTCGCAAGGAGGAG AGTTTGCTTTTGTTATTTTCGGCCTGGGGCTATCAGTTGGCGTGTTGCCC GCTGATCTGAGTCAGTTGCTTCTCCTCGTTGTGGCCATTTCTATGGCCGT GACACCGCTTCTGGCGGCAATCGGACGACAAATATCAACCCGACTGGAGA AAAAGAGAGGGCTTATTGGGGTGCGTATGGAGGATGCTGACACCGCTGAC GCTCGAGATTTTGTAATGGTAGCTGGCTGGGGTCGCGTTGGTCAGTCTGT TTGCGAAATGCTTGATGCCAAACTTGTGAGGTATATGGCATTCGATATGT CTCCGACCCGAGTCATTGACGCGCGTAATAAGGGCTTACCGGTCTTCTTT GGAGACGCCTCACGCCCTGAAGTTTTGCGTGCGGCAGGTGTTGAGAGAGC CCGTGCGGTTGTTGTCACACTTGATGATCCTGAACAGGCGTTGAGAGCTG TTCAGAACATCCGCCGAGAATTTGAAGGAGTCAAAGTTTTCTGTCGCGCT CGCGATGCCAAACATCAGAAACTGTTGCAGGCTGCTGGAGCCACTGCCAT CGTTCCTGAACTACTGGAGGCTTCACTTCTCCTAGGGGGGGCTGTTCTCC TGGACTATGGAACACCTTTAGATGAAGTTAACTCTTTGGTTGAGGAGGCA AGATCGGAGAACCTCTCTGAGATTGGGGTGTCTGATGATGTAACTGCCAC AATTGGATCTACATTCAGAGAGTCGAGATCGCGGGCACTTCGTGAACAAG AGCAGAAGCACGCAGAACCTGAAGTAGAGGAAGAGGACGAGAGCGAAGAA CCCGAACTTCCCCTTGAACCTGATGTGAAGAGTGAGGATATTCCAATCGT ATCAACCGCCACTGACGCCACAGAGGACATCTACGAACCTGCCGAGCAAG TAAGCGTCCCCGTTGAGGATGGAGTTCTTCAAGGAAAGAAGACCGTTGTT GTTGAGGACCCGGATTCAGATTCTGTCCGGTGA
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Coding sequence (CDS) from alignment at NODE_69_length_56878_cov_4.412084:27566..29998+

>Gcaud9510.t1 ID=Gcaud9510.t1|Name=Gcaud9510.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2433bp|location=Sequence derived from alignment at NODE_69_length_56878_cov_4.412084:27566..29998+ (Gracilaria caudata M_176_S67 male)
ATGCCGGCCCCCGCCCCCGTGGCCTTCGTCGCCGCGTTCCCTCTACGTCG
CTCGCGCATCCAGCCTTGCGTGCAGCGTCATCACTCTCGACTGCGAGCGC
AGTGCTCCTCCACGCCGCCTTCGGGCCCACGCGCTGCGAACGGCGCATGG
AGACGAGCGCTTGCGGCGGCGGCGGTCGCCGTGCAGATGTTGCGTCCGAT
GCCGTTGCGCGCCTTGCAGACGCCGGAGGTCCGTGGAGAGGGCGCTGTGG
CTTCTGCCCGTTTGTCCAGACGCGTCATTGTGGCTGATGCGATTGCCGTT
GCGCCGGTGATTGATACCGTTGCCGATGAGAGCGAGGAGCAACAAATAGA
CTCGACGCAGTCGCTGCTTGGTTCGCTTCCGGCGCGGATCGAGCGTCTTC
GATTGTCGTTACTTTCATTAGTTCAACATTCCCACGATTCGCATCAACAC
GCTGTCAACGACGCGCTTGTGTTGCTCATTGCTACCGTCATTATCATCCC
GTTAGCACGCCGCTTCGGTATCTCGCCCATTCTTGGCTTTCTTGCCGCCG
GTGTGGCGTTGGGCCCGAATGGATTTGCGCTCGTCAATGATGTGCGCACC
ACAAAGGCGCTTGCTGAACTCGGTGTCGTATTTTTTCTCTTCGAGATGGG
TTTGGAACTCTCCACATCCAAGCTCAACTCGCTACGAGCTGACGTGTTCG
GGTTGGGCACTGCACAGTTCTTCATCACGGGAGCCATTATCACCGCCTCT
GCTATTGCCGCGGGCATCACCTCCCAGGCTGCTATTGTTGTCGGTGCCGC
TTTGGCCCTTAGTTCCAGCGCATTTGTGCTTCAACTCCTCTCTGAGCGTG
GTGAAGTTGGTACTCGATTCGGTCGCGCCGCCTTTGGTATCCTCTTGTTT
CAGGACCTTGTAGTAGTTCCGGTCCTTGTCCTCATCCCTCTACTTGCCGG
CTCGGGAGCTCCAGCCGCTGTGTGGCGCGCTATAAGTGTCGCTAGTGTCA
AGGCTTTGCTTGCCCTTGCTTTTATCATCTTTATGGGCAACAACGCCTTG
CAACCTGTTTTTCGCTTTGTCGCGCGCGCTAGGAGCCCGGAGGCCTTCAT
TGCTGTAATCCTTCTCACCGTGCTGGGTACGTCTTCCCTCACACAAATGC
TCGGCTTGAGTGACACCCTTGGAGCCTTTTTGGCAGGCGTTATGCTTGCA
GAAACCAAGTTTCGACATCAAGTCGAAGCAGATATCCAGCCGTTCCGAGG
TCTCTTACTTGGTTTGTTCTTCATGACTGTAGGCTTTTCAATTGATCTCA
ATCTTGCATGGGCCAATTTAAGCAAGGTGGTATCCCTAGTATCTGGACTG
CTGGCAATCAAGGCTAGCGTTATCGCAGCCGCTGGTGTTACTTTTGGGTT
AAGTGTTGGATCTGCTCTGCGAACTGGACTGCTCCTTTCGCAAGGAGGAG
AGTTTGCTTTTGTTATTTTCGGCCTGGGGCTATCAGTTGGCGTGTTGCCC
GCTGATCTGAGTCAGTTGCTTCTCCTCGTTGTGGCCATTTCTATGGCCGT
GACACCGCTTCTGGCGGCAATCGGACGACAAATATCAACCCGACTGGAGA
AAAAGAGAGGGCTTATTGGGGTGCGTATGGAGGATGCTGACACCGCTGAC
GCTCGAGATTTTGTAATGGTAGCTGGCTGGGGTCGCGTTGGTCAGTCTGT
TTGCGAAATGCTTGATGCCAAACTTGTGAGGTATATGGCATTCGATATGT
CTCCGACCCGAGTCATTGACGCGCGTAATAAGGGCTTACCGGTCTTCTTT
GGAGACGCCTCACGCCCTGAAGTTTTGCGTGCGGCAGGTGTTGAGAGAGC
CCGTGCGGTTGTTGTCACACTTGATGATCCTGAACAGGCGTTGAGAGCTG
TTCAGAACATCCGCCGAGAATTTGAAGGAGTCAAAGTTTTCTGTCGCGCT
CGCGATGCCAAACATCAGAAACTGTTGCAGGCTGCTGGAGCCACTGCCAT
CGTTCCTGAACTACTGGAGGCTTCACTTCTCCTAGGGGGGGCTGTTCTCC
TGGACTATGGAACACCTTTAGATGAAGTTAACTCTTTGGTTGAGGAGGCA
AGATCGGAGAACCTCTCTGAGATTGGGGTGTCTGATGATGTAACTGCCAC
AATTGGATCTACATTCAGAGAGTCGAGATCGCGGGCACTTCGTGAACAAG
AGCAGAAGCACGCAGAACCTGAAGTAGAGGAAGAGGACGAGAGCGAAGAA
CCCGAACTTCCCCTTGAACCTGATGTGAAGAGTGAGGATATTCCAATCGT
ATCAACCGCCACTGACGCCACAGAGGACATCTACGAACCTGCCGAGCAAG
TAAGCGTCCCCGTTGAGGATGGAGTTCTTCAAGGAAAGAAGACCGTTGTT
GTTGAGGACCCGGATTCAGATTCTGTCCGGTGA
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