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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 130081.XP_005708884.1 |
| PFAMs | Na_H_Exchanger,TrkA_N |
| Max annot lvl | 2759|Eukaryota |
| Evalue | 1.98e-232 |
| EggNOG OGs | COG0475@1|root,KOG1650@2759|Eukaryota |
| Description | solute:proton antiporter activity |
| COG category | P |
Relationships
This mRNA is a part of the following gene feature(s):
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud9510.t1.start1 | Gcaud9510.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_69_length_56878_cov_4.412084 27566..27568 + |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud9510.t1.stop1 | Gcaud9510.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_69_length_56878_cov_4.412084 29996..29998 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud9510.t1 ID=Gcaud9510.t1|Name=Gcaud9510.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=811bp MPAPAPVAFVAAFPLRRSRIQPCVQRHHSRLRAQCSSTPPSGPRAANGAW RRALAAAAVAVQMLRPMPLRALQTPEVRGEGAVASARLSRRVIVADAIAV APVIDTVADESEEQQIDSTQSLLGSLPARIERLRLSLLSLVQHSHDSHQH AVNDALVLLIATVIIIPLARRFGISPILGFLAAGVALGPNGFALVNDVRT TKALAELGVVFFLFEMGLELSTSKLNSLRADVFGLGTAQFFITGAIITAS AIAAGITSQAAIVVGAALALSSSAFVLQLLSERGEVGTRFGRAAFGILLF QDLVVVPVLVLIPLLAGSGAPAAVWRAISVASVKALLALAFIIFMGNNAL QPVFRFVARARSPEAFIAVILLTVLGTSSLTQMLGLSDTLGAFLAGVMLA ETKFRHQVEADIQPFRGLLLGLFFMTVGFSIDLNLAWANLSKVVSLVSGL LAIKASVIAAAGVTFGLSVGSALRTGLLLSQGGEFAFVIFGLGLSVGVLP ADLSQLLLLVVAISMAVTPLLAAIGRQISTRLEKKRGLIGVRMEDADTAD ARDFVMVAGWGRVGQSVCEMLDAKLVRYMAFDMSPTRVIDARNKGLPVFF GDASRPEVLRAAGVERARAVVVTLDDPEQALRAVQNIRREFEGVKVFCRA RDAKHQKLLQAAGATAIVPELLEASLLLGGAVLLDYGTPLDEVNSLVEEA RSENLSEIGVSDDVTATIGSTFRESRSRALREQEQKHAEPEVEEEDESEE PELPLEPDVKSEDIPIVSTATDATEDIYEPAEQVSVPVEDGVLQGKKTVV VEDPDSDSVR* back to topspliced messenger RNA >Gcaud9510.t1 ID=Gcaud9510.t1|Name=Gcaud9510.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2433bp|location=Sequence derived from alignment at NODE_69_length_56878_cov_4.412084:27566..29998+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGCCGGCCCCCGCCCCCGTGGCCTTCGTCGCCGCGTTCCCTCTACGTCG CTCGCGCATCCAGCCTTGCGTGCAGCGTCATCACTCTCGACTGCGAGCGC AGTGCTCCTCCACGCCGCCTTCGGGCCCACGCGCTGCGAACGGCGCATGG AGACGAGCGCTTGCGGCGGCGGCGGTCGCCGTGCAGATGTTGCGTCCGAT GCCGTTGCGCGCCTTGCAGACGCCGGAGGTCCGTGGAGAGGGCGCTGTGG CTTCTGCCCGTTTGTCCAGACGCGTCATTGTGGCTGATGCGATTGCCGTT GCGCCGGTGATTGATACCGTTGCCGATGAGAGCGAGGAGCAACAAATAGA CTCGACGCAGTCGCTGCTTGGTTCGCTTCCGGCGCGGATCGAGCGTCTTC GATTGTCGTTACTTTCATTAGTTCAACATTCCCACGATTCGCATCAACAC GCTGTCAACGACGCGCTTGTGTTGCTCATTGCTACCGTCATTATCATCCC GTTAGCACGCCGCTTCGGTATCTCGCCCATTCTTGGCTTTCTTGCCGCCG GTGTGGCGTTGGGCCCGAATGGATTTGCGCTCGTCAATGATGTGCGCACC ACAAAGGCGCTTGCTGAACTCGGTGTCGTATTTTTTCTCTTCGAGATGGG TTTGGAACTCTCCACATCCAAGCTCAACTCGCTACGAGCTGACGTGTTCG GGTTGGGCACTGCACAGTTCTTCATCACGGGAGCCATTATCACCGCCTCT GCTATTGCCGCGGGCATCACCTCCCAGGCTGCTATTGTTGTCGGTGCCGC TTTGGCCCTTAGTTCCAGCGCATTTGTGCTTCAACTCCTCTCTGAGCGTG GTGAAGTTGGTACTCGATTCGGTCGCGCCGCCTTTGGTATCCTCTTGTTT CAGGACCTTGTAGTAGTTCCGGTCCTTGTCCTCATCCCTCTACTTGCCGG CTCGGGAGCTCCAGCCGCTGTGTGGCGCGCTATAAGTGTCGCTAGTGTCA AGGCTTTGCTTGCCCTTGCTTTTATCATCTTTATGGGCAACAACGCCTTG CAACCTGTTTTTCGCTTTGTCGCGCGCGCTAGGAGCCCGGAGGCCTTCAT TGCTGTAATCCTTCTCACCGTGCTGGGTACGTCTTCCCTCACACAAATGC TCGGCTTGAGTGACACCCTTGGAGCCTTTTTGGCAGGCGTTATGCTTGCA GAAACCAAGTTTCGACATCAAGTCGAAGCAGATATCCAGCCGTTCCGAGG TCTCTTACTTGGTTTGTTCTTCATGACTGTAGGCTTTTCAATTGATCTCA ATCTTGCATGGGCCAATTTAAGCAAGGTGGTATCCCTAGTATCTGGACTG CTGGCAATCAAGGCTAGCGTTATCGCAGCCGCTGGTGTTACTTTTGGGTT AAGTGTTGGATCTGCTCTGCGAACTGGACTGCTCCTTTCGCAAGGAGGAG AGTTTGCTTTTGTTATTTTCGGCCTGGGGCTATCAGTTGGCGTGTTGCCC GCTGATCTGAGTCAGTTGCTTCTCCTCGTTGTGGCCATTTCTATGGCCGT GACACCGCTTCTGGCGGCAATCGGACGACAAATATCAACCCGACTGGAGA AAAAGAGAGGGCTTATTGGGGTGCGTATGGAGGATGCTGACACCGCTGAC GCTCGAGATTTTGTAATGGTAGCTGGCTGGGGTCGCGTTGGTCAGTCTGT TTGCGAAATGCTTGATGCCAAACTTGTGAGGTATATGGCATTCGATATGT CTCCGACCCGAGTCATTGACGCGCGTAATAAGGGCTTACCGGTCTTCTTT GGAGACGCCTCACGCCCTGAAGTTTTGCGTGCGGCAGGTGTTGAGAGAGC CCGTGCGGTTGTTGTCACACTTGATGATCCTGAACAGGCGTTGAGAGCTG TTCAGAACATCCGCCGAGAATTTGAAGGAGTCAAAGTTTTCTGTCGCGCT CGCGATGCCAAACATCAGAAACTGTTGCAGGCTGCTGGAGCCACTGCCAT CGTTCCTGAACTACTGGAGGCTTCACTTCTCCTAGGGGGGGCTGTTCTCC TGGACTATGGAACACCTTTAGATGAAGTTAACTCTTTGGTTGAGGAGGCA AGATCGGAGAACCTCTCTGAGATTGGGGTGTCTGATGATGTAACTGCCAC AATTGGATCTACATTCAGAGAGTCGAGATCGCGGGCACTTCGTGAACAAG AGCAGAAGCACGCAGAACCTGAAGTAGAGGAAGAGGACGAGAGCGAAGAA CCCGAACTTCCCCTTGAACCTGATGTGAAGAGTGAGGATATTCCAATCGT ATCAACCGCCACTGACGCCACAGAGGACATCTACGAACCTGCCGAGCAAG TAAGCGTCCCCGTTGAGGATGGAGTTCTTCAAGGAAAGAAGACCGTTGTT GTTGAGGACCCGGATTCAGATTCTGTCCGGTGA back to topprotein sequence of Gcaud9510.t1 >Gcaud9510.t1 ID=Gcaud9510.t1|Name=Gcaud9510.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=811bp
MPAPAPVAFVAAFPLRRSRIQPCVQRHHSRLRAQCSSTPPSGPRAANGAW RRALAAAAVAVQMLRPMPLRALQTPEVRGEGAVASARLSRRVIVADAIAV APVIDTVADESEEQQIDSTQSLLGSLPARIERLRLSLLSLVQHSHDSHQH AVNDALVLLIATVIIIPLARRFGISPILGFLAAGVALGPNGFALVNDVRT TKALAELGVVFFLFEMGLELSTSKLNSLRADVFGLGTAQFFITGAIITAS AIAAGITSQAAIVVGAALALSSSAFVLQLLSERGEVGTRFGRAAFGILLF QDLVVVPVLVLIPLLAGSGAPAAVWRAISVASVKALLALAFIIFMGNNAL QPVFRFVARARSPEAFIAVILLTVLGTSSLTQMLGLSDTLGAFLAGVMLA ETKFRHQVEADIQPFRGLLLGLFFMTVGFSIDLNLAWANLSKVVSLVSGL LAIKASVIAAAGVTFGLSVGSALRTGLLLSQGGEFAFVIFGLGLSVGVLP ADLSQLLLLVVAISMAVTPLLAAIGRQISTRLEKKRGLIGVRMEDADTAD ARDFVMVAGWGRVGQSVCEMLDAKLVRYMAFDMSPTRVIDARNKGLPVFF GDASRPEVLRAAGVERARAVVVTLDDPEQALRAVQNIRREFEGVKVFCRA RDAKHQKLLQAAGATAIVPELLEASLLLGGAVLLDYGTPLDEVNSLVEEA RSENLSEIGVSDDVTATIGSTFRESRSRALREQEQKHAEPEVEEEDESEE PELPLEPDVKSEDIPIVSTATDATEDIYEPAEQVSVPVEDGVLQGKKTVV VEDPDSDSVR* back to topmRNA from alignment at NODE_69_length_56878_cov_4.412084:27566..29998+ Legend: start_codonpolypeptideCDSexonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud9510.t1 ID=Gcaud9510.t1|Name=Gcaud9510.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2433bp|location=Sequence derived from alignment at NODE_69_length_56878_cov_4.412084:27566..29998+ (Gracilaria caudata M_176_S67 male) ATGCCGGCCCCCGCCCCCGTGGCCTTCGTCGCCGCGTTCCCTCTACGTCG
CTCGCGCATCCAGCCTTGCGTGCAGCGTCATCACTCTCGACTGCGAGCGC
AGTGCTCCTCCACGCCGCCTTCGGGCCCACGCGCTGCGAACGGCGCATGG
AGACGAGCGCTTGCGGCGGCGGCGGTCGCCGTGCAGATGTTGCGTCCGAT
GCCGTTGCGCGCCTTGCAGACGCCGGAGGTCCGTGGAGAGGGCGCTGTGG
CTTCTGCCCGTTTGTCCAGACGCGTCATTGTGGCTGATGCGATTGCCGTT
GCGCCGGTGATTGATACCGTTGCCGATGAGAGCGAGGAGCAACAAATAGA
CTCGACGCAGTCGCTGCTTGGTTCGCTTCCGGCGCGGATCGAGCGTCTTC
GATTGTCGTTACTTTCATTAGTTCAACATTCCCACGATTCGCATCAACAC
GCTGTCAACGACGCGCTTGTGTTGCTCATTGCTACCGTCATTATCATCCC
GTTAGCACGCCGCTTCGGTATCTCGCCCATTCTTGGCTTTCTTGCCGCCG
GTGTGGCGTTGGGCCCGAATGGATTTGCGCTCGTCAATGATGTGCGCACC
ACAAAGGCGCTTGCTGAACTCGGTGTCGTATTTTTTCTCTTCGAGATGGG
TTTGGAACTCTCCACATCCAAGCTCAACTCGCTACGAGCTGACGTGTTCG
GGTTGGGCACTGCACAGTTCTTCATCACGGGAGCCATTATCACCGCCTCT
GCTATTGCCGCGGGCATCACCTCCCAGGCTGCTATTGTTGTCGGTGCCGC
TTTGGCCCTTAGTTCCAGCGCATTTGTGCTTCAACTCCTCTCTGAGCGTG
GTGAAGTTGGTACTCGATTCGGTCGCGCCGCCTTTGGTATCCTCTTGTTT
CAGGACCTTGTAGTAGTTCCGGTCCTTGTCCTCATCCCTCTACTTGCCGG
CTCGGGAGCTCCAGCCGCTGTGTGGCGCGCTATAAGTGTCGCTAGTGTCA
AGGCTTTGCTTGCCCTTGCTTTTATCATCTTTATGGGCAACAACGCCTTG
CAACCTGTTTTTCGCTTTGTCGCGCGCGCTAGGAGCCCGGAGGCCTTCAT
TGCTGTAATCCTTCTCACCGTGCTGGGTACGTCTTCCCTCACACAAATGC
TCGGCTTGAGTGACACCCTTGGAGCCTTTTTGGCAGGCGTTATGCTTGCA
GAAACCAAGTTTCGACATCAAGTCGAAGCAGATATCCAGCCGTTCCGAGG
TCTCTTACTTGGTTTGTTCTTCATGACTGTAGGCTTTTCAATTGATCTCA
ATCTTGCATGGGCCAATTTAAGCAAGGTGGTATCCCTAGTATCTGGACTG
CTGGCAATCAAGGCTAGCGTTATCGCAGCCGCTGGTGTTACTTTTGGGTT
AAGTGTTGGATCTGCTCTGCGAACTGGACTGCTCCTTTCGCAAGGAGGAG
AGTTTGCTTTTGTTATTTTCGGCCTGGGGCTATCAGTTGGCGTGTTGCCC
GCTGATCTGAGTCAGTTGCTTCTCCTCGTTGTGGCCATTTCTATGGCCGT
GACACCGCTTCTGGCGGCAATCGGACGACAAATATCAACCCGACTGGAGA
AAAAGAGAGGGCTTATTGGGGTGCGTATGGAGGATGCTGACACCGCTGAC
GCTCGAGATTTTGTAATGGTAGCTGGCTGGGGTCGCGTTGGTCAGTCTGT
TTGCGAAATGCTTGATGCCAAACTTGTGAGGTATATGGCATTCGATATGT
CTCCGACCCGAGTCATTGACGCGCGTAATAAGGGCTTACCGGTCTTCTTT
GGAGACGCCTCACGCCCTGAAGTTTTGCGTGCGGCAGGTGTTGAGAGAGC
CCGTGCGGTTGTTGTCACACTTGATGATCCTGAACAGGCGTTGAGAGCTG
TTCAGAACATCCGCCGAGAATTTGAAGGAGTCAAAGTTTTCTGTCGCGCT
CGCGATGCCAAACATCAGAAACTGTTGCAGGCTGCTGGAGCCACTGCCAT
CGTTCCTGAACTACTGGAGGCTTCACTTCTCCTAGGGGGGGCTGTTCTCC
TGGACTATGGAACACCTTTAGATGAAGTTAACTCTTTGGTTGAGGAGGCA
AGATCGGAGAACCTCTCTGAGATTGGGGTGTCTGATGATGTAACTGCCAC
AATTGGATCTACATTCAGAGAGTCGAGATCGCGGGCACTTCGTGAACAAG
AGCAGAAGCACGCAGAACCTGAAGTAGAGGAAGAGGACGAGAGCGAAGAA
CCCGAACTTCCCCTTGAACCTGATGTGAAGAGTGAGGATATTCCAATCGT
ATCAACCGCCACTGACGCCACAGAGGACATCTACGAACCTGCCGAGCAAG
TAAGCGTCCCCGTTGAGGATGGAGTTCTTCAAGGAAAGAAGACCGTTGTT
GTTGAGGACCCGGATTCAGATTCTGTCCGGTGA back to topCoding sequence (CDS) from alignment at NODE_69_length_56878_cov_4.412084:27566..29998+ >Gcaud9510.t1 ID=Gcaud9510.t1|Name=Gcaud9510.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2433bp|location=Sequence derived from alignment at NODE_69_length_56878_cov_4.412084:27566..29998+ (Gracilaria caudata M_176_S67 male) ATGCCGGCCCCCGCCCCCGTGGCCTTCGTCGCCGCGTTCCCTCTACGTCG CTCGCGCATCCAGCCTTGCGTGCAGCGTCATCACTCTCGACTGCGAGCGC AGTGCTCCTCCACGCCGCCTTCGGGCCCACGCGCTGCGAACGGCGCATGG AGACGAGCGCTTGCGGCGGCGGCGGTCGCCGTGCAGATGTTGCGTCCGAT GCCGTTGCGCGCCTTGCAGACGCCGGAGGTCCGTGGAGAGGGCGCTGTGG CTTCTGCCCGTTTGTCCAGACGCGTCATTGTGGCTGATGCGATTGCCGTT GCGCCGGTGATTGATACCGTTGCCGATGAGAGCGAGGAGCAACAAATAGA CTCGACGCAGTCGCTGCTTGGTTCGCTTCCGGCGCGGATCGAGCGTCTTC GATTGTCGTTACTTTCATTAGTTCAACATTCCCACGATTCGCATCAACAC GCTGTCAACGACGCGCTTGTGTTGCTCATTGCTACCGTCATTATCATCCC GTTAGCACGCCGCTTCGGTATCTCGCCCATTCTTGGCTTTCTTGCCGCCG GTGTGGCGTTGGGCCCGAATGGATTTGCGCTCGTCAATGATGTGCGCACC ACAAAGGCGCTTGCTGAACTCGGTGTCGTATTTTTTCTCTTCGAGATGGG TTTGGAACTCTCCACATCCAAGCTCAACTCGCTACGAGCTGACGTGTTCG GGTTGGGCACTGCACAGTTCTTCATCACGGGAGCCATTATCACCGCCTCT GCTATTGCCGCGGGCATCACCTCCCAGGCTGCTATTGTTGTCGGTGCCGC TTTGGCCCTTAGTTCCAGCGCATTTGTGCTTCAACTCCTCTCTGAGCGTG GTGAAGTTGGTACTCGATTCGGTCGCGCCGCCTTTGGTATCCTCTTGTTT CAGGACCTTGTAGTAGTTCCGGTCCTTGTCCTCATCCCTCTACTTGCCGG CTCGGGAGCTCCAGCCGCTGTGTGGCGCGCTATAAGTGTCGCTAGTGTCA AGGCTTTGCTTGCCCTTGCTTTTATCATCTTTATGGGCAACAACGCCTTG CAACCTGTTTTTCGCTTTGTCGCGCGCGCTAGGAGCCCGGAGGCCTTCAT TGCTGTAATCCTTCTCACCGTGCTGGGTACGTCTTCCCTCACACAAATGC TCGGCTTGAGTGACACCCTTGGAGCCTTTTTGGCAGGCGTTATGCTTGCA GAAACCAAGTTTCGACATCAAGTCGAAGCAGATATCCAGCCGTTCCGAGG TCTCTTACTTGGTTTGTTCTTCATGACTGTAGGCTTTTCAATTGATCTCA ATCTTGCATGGGCCAATTTAAGCAAGGTGGTATCCCTAGTATCTGGACTG CTGGCAATCAAGGCTAGCGTTATCGCAGCCGCTGGTGTTACTTTTGGGTT AAGTGTTGGATCTGCTCTGCGAACTGGACTGCTCCTTTCGCAAGGAGGAG AGTTTGCTTTTGTTATTTTCGGCCTGGGGCTATCAGTTGGCGTGTTGCCC GCTGATCTGAGTCAGTTGCTTCTCCTCGTTGTGGCCATTTCTATGGCCGT GACACCGCTTCTGGCGGCAATCGGACGACAAATATCAACCCGACTGGAGA AAAAGAGAGGGCTTATTGGGGTGCGTATGGAGGATGCTGACACCGCTGAC GCTCGAGATTTTGTAATGGTAGCTGGCTGGGGTCGCGTTGGTCAGTCTGT TTGCGAAATGCTTGATGCCAAACTTGTGAGGTATATGGCATTCGATATGT CTCCGACCCGAGTCATTGACGCGCGTAATAAGGGCTTACCGGTCTTCTTT GGAGACGCCTCACGCCCTGAAGTTTTGCGTGCGGCAGGTGTTGAGAGAGC CCGTGCGGTTGTTGTCACACTTGATGATCCTGAACAGGCGTTGAGAGCTG TTCAGAACATCCGCCGAGAATTTGAAGGAGTCAAAGTTTTCTGTCGCGCT CGCGATGCCAAACATCAGAAACTGTTGCAGGCTGCTGGAGCCACTGCCAT CGTTCCTGAACTACTGGAGGCTTCACTTCTCCTAGGGGGGGCTGTTCTCC TGGACTATGGAACACCTTTAGATGAAGTTAACTCTTTGGTTGAGGAGGCA AGATCGGAGAACCTCTCTGAGATTGGGGTGTCTGATGATGTAACTGCCAC AATTGGATCTACATTCAGAGAGTCGAGATCGCGGGCACTTCGTGAACAAG AGCAGAAGCACGCAGAACCTGAAGTAGAGGAAGAGGACGAGAGCGAAGAA CCCGAACTTCCCCTTGAACCTGATGTGAAGAGTGAGGATATTCCAATCGT ATCAACCGCCACTGACGCCACAGAGGACATCTACGAACCTGCCGAGCAAG TAAGCGTCCCCGTTGAGGATGGAGTTCTTCAAGGAAAGAAGACCGTTGTT GTTGAGGACCCGGATTCAGATTCTGTCCGGTGA back to top
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