Gcaud9511.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud9511.t1
Unique Name	Gcaud9511.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	388

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_69_length_56878_cov_4.412084	contig	NODE_69_length_56878_cov_4.412084:30548..31711 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	13735.ENSPSIP00000003754
Preferred name	Gpdh
PFAMs	NAD_Gly3P_dh_C,NAD_Gly3P_dh_N
Max annot lvl	33208\|Metazoa
KEGG rclass	RC00029
KEGG ko	ko:K00006
KEGG Reaction	R00842
KEGG Pathway	ko00564,ko01110,ko04011,map00564,map01110,map04011
GOs	GO:0003674,GO:0003824,GO:0004367,GO:0004368,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006066,GO:0006067,GO:0006072,GO:0006629,GO:0006638,GO:0006639,GO:0006641,GO:0006793,GO:0006796,GO:0006950,GO:0006970,GO:0006972,GO:0006973,GO:0007610,GO:0007626,GO:0007629,GO:0008150,GO:0008152,GO:0008344,GO:0009628,GO:0009987,GO:0016491,GO:0016614,GO:0016616,GO:0016901,GO:0016999,GO:0017144,GO:0019637,GO:0019725,GO:0030016,GO:0030017,GO:0030018,GO:0030534,GO:0031430,GO:0031672,GO:0031674,GO:0032501,GO:0033554,GO:0034308,GO:0036296,GO:0042592,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043292,GO:0044237,GO:0044238,GO:0044255,GO:0044281,GO:0044422,GO:0044424,GO:0044444,GO:0044449,GO:0044464,GO:0046486,GO:0050896,GO:0051716,GO:0052646,GO:0055093,GO:0055114,GO:0065007,GO:0065008,GO:0070482,GO:0071214,GO:0071470,GO:0071474,GO:0071704,GO:0099080,GO:0099081,GO:0099512,GO:0104004,GO:1901135,GO:1901615
Evalue	5.23e-130
EggNOG OGs	COG0240@1\|root,KOG2711@2759\|Eukaryota,38E7F@33154\|Opisthokonta,3BCI8@33208\|Metazoa,3CVH2@33213\|Bilateria,47ZP4@7711\|Chordata,48VII@7742\|Vertebrata,4C8NQ@8459\|Testudines
EC	1.1.1.8
Description	NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
COG category	C
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9511	Gcaud9511	Gracilaria caudata M_176_S67 male	gene	NODE_69_length_56878_cov_4.412084 30548..31711 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9511.t1.stop1	Gcaud9511.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_69_length_56878_cov_4.412084 30548..30550 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9511.t1.CDS1	Gcaud9511.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_69_length_56878_cov_4.412084 30548..31711 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9511.t1.exon1	Gcaud9511.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_69_length_56878_cov_4.412084 30548..31711 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9511.t1.start1	Gcaud9511.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_69_length_56878_cov_4.412084 31709..31711 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9511.t1	Gcaud9511.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_69_length_56878_cov_4.412084 30548..31711 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_69_length_56878_cov_4.412084:30548..31711-
coding sequence from alignment at NODE_69_length_56878_cov_4.412084:30548..31711-

mRNA sequence

>Gcaud9511.t1 ID=Gcaud9511.t1|Name=Gcaud9511.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=388bp
MTSIVIRTEAGARSHATPPPTHSRQDSSEEVLPTKKVCIVGAGNWGSAAA
IIIANNVKNFDYYEDTVNMWVFEEMIDGKKLSEIINERHYNVKYLPEHRL
PDNIVAVPDLLEAASGCNVFVFVLPHQFLPRTCKTLKGHIPPDSIGISLI
KGIDFDDNGVVLMTDIIQNELSIDVSVLSGANIANEIAAGKFCESTIGYS
NTDNAIVFFELFNNRNFRISLIKDVQSVQVFGALKNVIALGAGFCDALDM
GNNTKAALIRIGLLEMHRFASKFFAPIHDATMVESCGLADLITTCMGGRN
RRVSEAFARARGKRSWEELEDEMLKGQKLQGTSTVLEVMKILERDDCVDE
FPFIKLIYQIAYDGAEIETIVDFPDEHAAAALDDLDD*

spliced messenger RNA

>Gcaud9511.t1 ID=Gcaud9511.t1|Name=Gcaud9511.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1164bp|location=Sequence derived from alignment at NODE_69_length_56878_cov_4.412084:30548..31711- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGTCTATTGTTATTCGTACTGAGGCGGGTGCGCGCTCACATGCCAC
TCCTCCACCAACGCATTCTCGTCAGGACTCGTCCGAAGAGGTGCTTCCCA
CCAAGAAGGTATGTATTGTCGGTGCCGGAAACTGGGGCAGTGCCGCTGCC
ATAATCATCGCGAACAATGTCAAGAACTTTGATTACTATGAAGACACTGT
CAACATGTGGGTCTTTGAGGAAATGATTGACGGTAAGAAGCTCTCAGAAA
TTATCAACGAACGTCACTACAATGTGAAGTATCTTCCAGAACATCGTCTA
CCCGACAATATTGTTGCTGTTCCGGACTTGCTAGAAGCTGCCTCTGGTTG
CAACGTCTTTGTTTTCGTTCTTCCGCATCAGTTCCTACCGCGCACCTGCA
AGACGCTTAAGGGACACATTCCGCCAGATTCCATTGGCATTTCACTAATC
AAGGGTATTGACTTCGACGATAACGGAGTCGTACTGATGACAGATATTAT
TCAGAACGAGCTTTCCATCGACGTATCCGTACTCAGTGGCGCTAACATTG
CCAACGAAATTGCTGCAGGGAAGTTTTGCGAATCCACAATTGGATACAGT
AATACCGATAATGCCATTGTGTTTTTCGAACTCTTCAATAATCGCAACTT
CCGTATAAGTCTCATTAAGGACGTTCAATCCGTGCAGGTGTTTGGCGCTC
TAAAAAACGTCATTGCTCTGGGAGCAGGTTTCTGTGATGCCTTAGACATG
GGCAACAACACGAAGGCAGCTCTGATTCGAATTGGCCTACTCGAGATGCA
TCGCTTCGCCAGCAAATTCTTTGCGCCTATTCATGATGCCACAATGGTAG
AATCATGCGGCCTGGCAGATCTGATCACAACGTGCATGGGTGGTCGTAAT
CGACGCGTGTCGGAGGCTTTTGCTCGAGCACGGGGTAAACGCTCGTGGGA
AGAGTTGGAAGACGAAATGCTCAAAGGGCAGAAACTGCAAGGCACAAGCA
CTGTGTTGGAGGTGATGAAAATTCTCGAACGCGATGACTGTGTGGACGAG
TTTCCCTTCATCAAGTTGATTTATCAAATTGCGTATGATGGCGCAGAAAT
TGAGACTATTGTGGACTTCCCGGACGAGCATGCAGCCGCTGCATTGGACG
ATCTTGATGATTAA

protein sequence of Gcaud9511.t1

>Gcaud9511.t1 ID=Gcaud9511.t1|Name=Gcaud9511.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=388bp
MTSIVIRTEAGARSHATPPPTHSRQDSSEEVLPTKKVCIVGAGNWGSAAA
IIIANNVKNFDYYEDTVNMWVFEEMIDGKKLSEIINERHYNVKYLPEHRL
PDNIVAVPDLLEAASGCNVFVFVLPHQFLPRTCKTLKGHIPPDSIGISLI
KGIDFDDNGVVLMTDIIQNELSIDVSVLSGANIANEIAAGKFCESTIGYS
NTDNAIVFFELFNNRNFRISLIKDVQSVQVFGALKNVIALGAGFCDALDM
GNNTKAALIRIGLLEMHRFASKFFAPIHDATMVESCGLADLITTCMGGRN
RRVSEAFARARGKRSWEELEDEMLKGQKLQGTSTVLEVMKILERDDCVDE
FPFIKLIYQIAYDGAEIETIVDFPDEHAAAALDDLDD*

mRNA from alignment at NODE_69_length_56878_cov_4.412084:30548..31711-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud9511.t1 ID=Gcaud9511.t1|Name=Gcaud9511.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1164bp|location=Sequence derived from alignment at NODE_69_length_56878_cov_4.412084:30548..31711- (Gracilaria caudata M_176_S67 male)
ATGACGTCTATTGTTATTCGTACTGAGGCGGGTGCGCGCTCACATGCCAC
TCCTCCACCAACGCATTCTCGTCAGGACTCGTCCGAAGAGGTGCTTCCCA
CCAAGAAGGTATGTATTGTCGGTGCCGGAAACTGGGGCAGTGCCGCTGCC
ATAATCATCGCGAACAATGTCAAGAACTTTGATTACTATGAAGACACTGT
CAACATGTGGGTCTTTGAGGAAATGATTGACGGTAAGAAGCTCTCAGAAA
TTATCAACGAACGTCACTACAATGTGAAGTATCTTCCAGAACATCGTCTA
CCCGACAATATTGTTGCTGTTCCGGACTTGCTAGAAGCTGCCTCTGGTTG
CAACGTCTTTGTTTTCGTTCTTCCGCATCAGTTCCTACCGCGCACCTGCA
AGACGCTTAAGGGACACATTCCGCCAGATTCCATTGGCATTTCACTAATC
AAGGGTATTGACTTCGACGATAACGGAGTCGTACTGATGACAGATATTAT
TCAGAACGAGCTTTCCATCGACGTATCCGTACTCAGTGGCGCTAACATTG
CCAACGAAATTGCTGCAGGGAAGTTTTGCGAATCCACAATTGGATACAGT
AATACCGATAATGCCATTGTGTTTTTCGAACTCTTCAATAATCGCAACTT
CCGTATAAGTCTCATTAAGGACGTTCAATCCGTGCAGGTGTTTGGCGCTC
TAAAAAACGTCATTGCTCTGGGAGCAGGTTTCTGTGATGCCTTAGACATG
GGCAACAACACGAAGGCAGCTCTGATTCGAATTGGCCTACTCGAGATGCA
TCGCTTCGCCAGCAAATTCTTTGCGCCTATTCATGATGCCACAATGGTAG
AATCATGCGGCCTGGCAGATCTGATCACAACGTGCATGGGTGGTCGTAAT
CGACGCGTGTCGGAGGCTTTTGCTCGAGCACGGGGTAAACGCTCGTGGGA
AGAGTTGGAAGACGAAATGCTCAAAGGGCAGAAACTGCAAGGCACAAGCA
CTGTGTTGGAGGTGATGAAAATTCTCGAACGCGATGACTGTGTGGACGAG
TTTCCCTTCATCAAGTTGATTTATCAAATTGCGTATGATGGCGCAGAAAT
TGAGACTATTGTGGACTTCCCGGACGAGCATGCAGCCGCTGCATTGGACG
ATCTTGATGATTAA

Coding sequence (CDS) from alignment at NODE_69_length_56878_cov_4.412084:30548..31711-

>Gcaud9511.t1 ID=Gcaud9511.t1|Name=Gcaud9511.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1164bp|location=Sequence derived from alignment at NODE_69_length_56878_cov_4.412084:30548..31711- (Gracilaria caudata M_176_S67 male)
ATGACGTCTATTGTTATTCGTACTGAGGCGGGTGCGCGCTCACATGCCAC
TCCTCCACCAACGCATTCTCGTCAGGACTCGTCCGAAGAGGTGCTTCCCA
CCAAGAAGGTATGTATTGTCGGTGCCGGAAACTGGGGCAGTGCCGCTGCC
ATAATCATCGCGAACAATGTCAAGAACTTTGATTACTATGAAGACACTGT
CAACATGTGGGTCTTTGAGGAAATGATTGACGGTAAGAAGCTCTCAGAAA
TTATCAACGAACGTCACTACAATGTGAAGTATCTTCCAGAACATCGTCTA
CCCGACAATATTGTTGCTGTTCCGGACTTGCTAGAAGCTGCCTCTGGTTG
CAACGTCTTTGTTTTCGTTCTTCCGCATCAGTTCCTACCGCGCACCTGCA
AGACGCTTAAGGGACACATTCCGCCAGATTCCATTGGCATTTCACTAATC
AAGGGTATTGACTTCGACGATAACGGAGTCGTACTGATGACAGATATTAT
TCAGAACGAGCTTTCCATCGACGTATCCGTACTCAGTGGCGCTAACATTG
CCAACGAAATTGCTGCAGGGAAGTTTTGCGAATCCACAATTGGATACAGT
AATACCGATAATGCCATTGTGTTTTTCGAACTCTTCAATAATCGCAACTT
CCGTATAAGTCTCATTAAGGACGTTCAATCCGTGCAGGTGTTTGGCGCTC
TAAAAAACGTCATTGCTCTGGGAGCAGGTTTCTGTGATGCCTTAGACATG
GGCAACAACACGAAGGCAGCTCTGATTCGAATTGGCCTACTCGAGATGCA
TCGCTTCGCCAGCAAATTCTTTGCGCCTATTCATGATGCCACAATGGTAG
AATCATGCGGCCTGGCAGATCTGATCACAACGTGCATGGGTGGTCGTAAT
CGACGCGTGTCGGAGGCTTTTGCTCGAGCACGGGGTAAACGCTCGTGGGA
AGAGTTGGAAGACGAAATGCTCAAAGGGCAGAAACTGCAAGGCACAAGCA
CTGTGTTGGAGGTGATGAAAATTCTCGAACGCGATGACTGTGTGGACGAG
TTTCCCTTCATCAAGTTGATTTATCAAATTGCGTATGATGGCGCAGAAAT
TGAGACTATTGTGGACTTCCCGGACGAGCATGCAGCCGCTGCATTGGACG
ATCTTGATGATTAA