Gcaud9498.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud9498.t1
Unique NameGcaud9498.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length256
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_69_length_56878_cov_4.412084contigNODE_69_length_56878_cov_4.412084:2342..3109 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4098.XP_009587902.1
PFAMsTIM
Max annot lvl35493|Streptophyta
KEGG rclassRC00423
KEGG koko:K01803
KEGG ReactionR01015
KEGG Pathwayko00010,ko00051,ko00562,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00051,map00562,map00710,map01100,map01110,map01120,map01130,map01200,map01230
KEGG ModuleM00001,M00002,M00003
Evalue2.6e-104
EggNOG OGsCOG0149@1|root,KOG1643@2759|Eukaryota,37IFK@33090|Viridiplantae,3G8AG@35493|Streptophyta,44G2U@71274|asterids
EC5.3.1.1
DescriptionTriosephosphate isomerase
COG categoryG
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9498Gcaud9498Gracilaria caudata M_176_S67 malegeneNODE_69_length_56878_cov_4.412084 2342..3109 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9498.t1.start1Gcaud9498.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_69_length_56878_cov_4.412084 2342..2344 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9498.t1.CDS1Gcaud9498.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_69_length_56878_cov_4.412084 2342..3109 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9498.t1.exon1Gcaud9498.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_69_length_56878_cov_4.412084 2342..3109 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9498.t1.stop1Gcaud9498.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_69_length_56878_cov_4.412084 3107..3109 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9498.t1Gcaud9498.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_69_length_56878_cov_4.412084 2342..3109 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud9498.t1 ID=Gcaud9498.t1|Name=Gcaud9498.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=256bp
MGRTFFVGGNWKCNGSVKSITDLCASWKQSTDNGAKYSGQPVEIVIAPPA
IYALTTRDLLPTNFHVSLQNCYVKTGAFTGEIAADMIADTSIPWVITGHS
ERRTIFKETDEMVADKTAYAISNGVSVIACIGELLEEREDGKTMEVNERQ
LAAIAAKVTDWGKVVIAYEPVWAIGTGKVATPDQAQEVHKFLREWLASNV
SADVAASTRIIYGGSVKPANANDLAAQPDIDGFLVGGASLKPDFITVIDS
YSSKA*
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spliced messenger RNA

>Gcaud9498.t1 ID=Gcaud9498.t1|Name=Gcaud9498.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=768bp|location=Sequence derived from alignment at NODE_69_length_56878_cov_4.412084:2342..3109+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTCGCACGTTCTTCGTCGGAGGTAACTGGAAGTGTAATGGTTCTGT
CAAGAGCATAACCGATCTGTGCGCCTCGTGGAAGCAATCCACTGATAATG
GCGCCAAGTACTCGGGTCAACCTGTCGAAATCGTCATTGCCCCGCCCGCC
ATATACGCCCTCACCACTCGCGATTTGCTGCCCACCAACTTCCACGTATC
GCTGCAGAACTGTTATGTCAAGACCGGCGCCTTCACCGGCGAAATCGCCG
CCGACATGATAGCCGACACATCCATCCCATGGGTCATCACCGGACATTCG
GAGAGGCGAACAATTTTCAAAGAAACAGATGAAATGGTCGCCGACAAGAC
CGCGTACGCCATCTCCAACGGCGTCAGCGTCATCGCCTGCATCGGCGAGT
TGTTGGAAGAACGCGAGGACGGTAAAACCATGGAGGTGAACGAGAGACAA
CTTGCAGCCATTGCCGCGAAGGTCACCGATTGGGGCAAAGTTGTTATTGC
GTACGAACCTGTATGGGCCATTGGTACTGGAAAGGTCGCCACCCCAGATC
AAGCACAAGAGGTGCACAAGTTCTTGCGCGAATGGCTTGCCTCTAATGTC
AGTGCCGACGTCGCCGCGTCCACCCGCATCATTTATGGAGGTTCTGTGAA
GCCGGCAAATGCAAACGACCTTGCGGCGCAGCCTGATATCGATGGATTCC
TTGTCGGTGGCGCTTCCCTTAAACCTGATTTCATCACTGTTATCGATTCT
TACTCATCCAAGGCGTAA
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protein sequence of Gcaud9498.t1

>Gcaud9498.t1 ID=Gcaud9498.t1|Name=Gcaud9498.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=256bp
MGRTFFVGGNWKCNGSVKSITDLCASWKQSTDNGAKYSGQPVEIVIAPPA
IYALTTRDLLPTNFHVSLQNCYVKTGAFTGEIAADMIADTSIPWVITGHS
ERRTIFKETDEMVADKTAYAISNGVSVIACIGELLEEREDGKTMEVNERQ
LAAIAAKVTDWGKVVIAYEPVWAIGTGKVATPDQAQEVHKFLREWLASNV
SADVAASTRIIYGGSVKPANANDLAAQPDIDGFLVGGASLKPDFITVIDS
YSSKA*
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mRNA from alignment at NODE_69_length_56878_cov_4.412084:2342..3109+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud9498.t1 ID=Gcaud9498.t1|Name=Gcaud9498.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=768bp|location=Sequence derived from alignment at NODE_69_length_56878_cov_4.412084:2342..3109+ (Gracilaria caudata M_176_S67 male)
ATGGGTCGCACGTTCTTCGTCGGAGGTAACTGGAAGTGTAATGGTTCTGT
CAAGAGCATAACCGATCTGTGCGCCTCGTGGAAGCAATCCACTGATAATG
GCGCCAAGTACTCGGGTCAACCTGTCGAAATCGTCATTGCCCCGCCCGCC
ATATACGCCCTCACCACTCGCGATTTGCTGCCCACCAACTTCCACGTATC
GCTGCAGAACTGTTATGTCAAGACCGGCGCCTTCACCGGCGAAATCGCCG
CCGACATGATAGCCGACACATCCATCCCATGGGTCATCACCGGACATTCG
GAGAGGCGAACAATTTTCAAAGAAACAGATGAAATGGTCGCCGACAAGAC
CGCGTACGCCATCTCCAACGGCGTCAGCGTCATCGCCTGCATCGGCGAGT
TGTTGGAAGAACGCGAGGACGGTAAAACCATGGAGGTGAACGAGAGACAA
CTTGCAGCCATTGCCGCGAAGGTCACCGATTGGGGCAAAGTTGTTATTGC
GTACGAACCTGTATGGGCCATTGGTACTGGAAAGGTCGCCACCCCAGATC
AAGCACAAGAGGTGCACAAGTTCTTGCGCGAATGGCTTGCCTCTAATGTC
AGTGCCGACGTCGCCGCGTCCACCCGCATCATTTATGGAGGTTCTGTGAA
GCCGGCAAATGCAAACGACCTTGCGGCGCAGCCTGATATCGATGGATTCC
TTGTCGGTGGCGCTTCCCTTAAACCTGATTTCATCACTGTTATCGATTCT
TACTCATCCAAGGCGTAA
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Coding sequence (CDS) from alignment at NODE_69_length_56878_cov_4.412084:2342..3109+

>Gcaud9498.t1 ID=Gcaud9498.t1|Name=Gcaud9498.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=768bp|location=Sequence derived from alignment at NODE_69_length_56878_cov_4.412084:2342..3109+ (Gracilaria caudata M_176_S67 male)
ATGGGTCGCACGTTCTTCGTCGGAGGTAACTGGAAGTGTAATGGTTCTGT
CAAGAGCATAACCGATCTGTGCGCCTCGTGGAAGCAATCCACTGATAATG
GCGCCAAGTACTCGGGTCAACCTGTCGAAATCGTCATTGCCCCGCCCGCC
ATATACGCCCTCACCACTCGCGATTTGCTGCCCACCAACTTCCACGTATC
GCTGCAGAACTGTTATGTCAAGACCGGCGCCTTCACCGGCGAAATCGCCG
CCGACATGATAGCCGACACATCCATCCCATGGGTCATCACCGGACATTCG
GAGAGGCGAACAATTTTCAAAGAAACAGATGAAATGGTCGCCGACAAGAC
CGCGTACGCCATCTCCAACGGCGTCAGCGTCATCGCCTGCATCGGCGAGT
TGTTGGAAGAACGCGAGGACGGTAAAACCATGGAGGTGAACGAGAGACAA
CTTGCAGCCATTGCCGCGAAGGTCACCGATTGGGGCAAAGTTGTTATTGC
GTACGAACCTGTATGGGCCATTGGTACTGGAAAGGTCGCCACCCCAGATC
AAGCACAAGAGGTGCACAAGTTCTTGCGCGAATGGCTTGCCTCTAATGTC
AGTGCCGACGTCGCCGCGTCCACCCGCATCATTTATGGAGGTTCTGTGAA
GCCGGCAAATGCAAACGACCTTGCGGCGCAGCCTGATATCGATGGATTCC
TTGTCGGTGGCGCTTCCCTTAAACCTGATTTCATCACTGTTATCGATTCT
TACTCATCCAAGGCGTAA
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