Gcaud9505.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud9505.t1
Unique Name	Gcaud9505.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	241

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_69_length_56878_cov_4.412084	contig	NODE_69_length_56878_cov_4.412084:18379..19192 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	159749.K0RB40
PFAMs	MIP
Max annot lvl	2836\|Bacillariophyta
Evalue	6.07e-54
EggNOG OGs	COG0580@1\|root,KOG0223@2759\|Eukaryota,2XG49@2836\|Bacillariophyta
Description	Major intrinsic protein
COG category	P

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9505	Gcaud9505	Gracilaria caudata M_176_S67 male	gene	NODE_69_length_56878_cov_4.412084 18379..19192 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9505.t1	Gcaud9505.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_69_length_56878_cov_4.412084 18379..19192 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9505.t1.stop1	Gcaud9505.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_69_length_56878_cov_4.412084 18379..18381 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9505.t1.CDS1	Gcaud9505.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_69_length_56878_cov_4.412084 18379..18650 -
Gcaud9505.t1.CDS2	Gcaud9505.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_69_length_56878_cov_4.412084 18742..19192 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9505.t1.exon1	Gcaud9505.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_69_length_56878_cov_4.412084 18379..18650 -
Gcaud9505.t1.exon2	Gcaud9505.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_69_length_56878_cov_4.412084 18742..19192 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9505.t1.intron1	Gcaud9505.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_69_length_56878_cov_4.412084 18651..18741 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9505.t1.start1	Gcaud9505.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_69_length_56878_cov_4.412084 19190..19192 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_69_length_56878_cov_4.412084:18379..19192-
coding sequence from alignment at NODE_69_length_56878_cov_4.412084:18379..19192-

mRNA sequence

>Gcaud9505.t1 ID=Gcaud9505.t1|Name=Gcaud9505.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=241bp
MALEEFRTKFGKVMMELVATAMLVMTIQISVAVSPGLAPVAIGLVLVLLV
YAAAPISGGHVNPAVTFSVFLRGKISLDEMLLYWIFQVGGGALGALLGAL
ISGSLSAVQIGEGHNFLQAFVAEFTFTSLLCFVVLATATNSKAENNQYFG
AAIGLVVLVGAIAVGPISGGAFNPAVVIGLNLIKHFWKIPYMLWVSLANM
AGAIAGAGVFYIVAPDEFEHFSEAAHQLRDEAANLIPNRT*

spliced messenger RNA

>Gcaud9505.t1 ID=Gcaud9505.t1|Name=Gcaud9505.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=723bp|location=Sequence derived from alignment at NODE_69_length_56878_cov_4.412084:18379..19192- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCTCGAGGAGTTCCGTACAAAGTTTGGAAAGGTCATGATGGAGCT
AGTGGCTACTGCCATGCTCGTCATGACCATTCAGATCTCCGTAGCCGTCT
CCCCAGGGCTTGCTCCCGTAGCGATTGGTCTGGTGCTTGTGCTTCTTGTG
TATGCTGCTGCTCCAATCTCTGGTGGACATGTGAATCCAGCCGTTACCTT
TTCTGTTTTCCTGCGTGGAAAGATTTCTTTGGATGAGATGTTGTTGTACT
GGATCTTCCAGGTTGGTGGTGGTGCACTCGGTGCACTATTGGGCGCCCTT
ATTTCAGGCTCCCTTTCCGCCGTCCAGATTGGAGAGGGCCACAACTTTCT
TCAGGCTTTTGTCGCTGAGTTTACTTTCACCTCCTTGTTGTGCTTTGTCG
TCTTAGCTACCGCCACTAACAGCAAGGCTGAGAACAACCAGTACTTTGGA
GCTGCCATCGGTCTCGTGGTTCTCGTTGGTGCCATCGCTGTGGGTCCCAT
CAGCGGCGGTGCGTTCAATCCTGCAGTCGTGATTGGTCTTAACCTCATCA
AGCACTTCTGGAAGATTCCGTATATGCTGTGGGTTTCTCTCGCTAACATG
GCCGGTGCTATCGCTGGAGCCGGTGTGTTCTACATCGTTGCACCGGATGA
GTTTGAACATTTCTCTGAGGCCGCTCATCAATTGAGAGATGAAGCGGCTA
ATCTTATTCCCAATCGCACCTGA

protein sequence of Gcaud9505.t1

>Gcaud9505.t1 ID=Gcaud9505.t1|Name=Gcaud9505.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=241bp
MALEEFRTKFGKVMMELVATAMLVMTIQISVAVSPGLAPVAIGLVLVLLV
YAAAPISGGHVNPAVTFSVFLRGKISLDEMLLYWIFQVGGGALGALLGAL
ISGSLSAVQIGEGHNFLQAFVAEFTFTSLLCFVVLATATNSKAENNQYFG
AAIGLVVLVGAIAVGPISGGAFNPAVVIGLNLIKHFWKIPYMLWVSLANM
AGAIAGAGVFYIVAPDEFEHFSEAAHQLRDEAANLIPNRT*

mRNA from alignment at NODE_69_length_56878_cov_4.412084:18379..19192-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud9505.t1 ID=Gcaud9505.t1|Name=Gcaud9505.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=814bp|location=Sequence derived from alignment at NODE_69_length_56878_cov_4.412084:18379..19192- (Gracilaria caudata M_176_S67 male)
ATGGCTCTCGAGGAGTTCCGTACAAAGTTTGGAAAGGTCATGATGGAGCT
AGTGGCTACTGCCATGCTCGTCATGACCATTCAGATCTCCGTAGCCGTCT
CCCCAGGGCTTGCTCCCGTAGCGATTGGTCTGGTGCTTGTGCTTCTTGTG
TATGCTGCTGCTCCAATCTCTGGTGGACATGTGAATCCAGCCGTTACCTT
TTCTGTTTTCCTGCGTGGAAAGATTTCTTTGGATGAGATGTTGTTGTACT
GGATCTTCCAGGTTGGTGGTGGTGCACTCGGTGCACTATTGGGCGCCCTT
ATTTCAGGCTCCCTTTCCGCCGTCCAGATTGGAGAGGGCCACAACTTTCT
TCAGGCTTTTGTCGCTGAGTTTACTTTCACCTCCTTGTTGTGCTTTGTCG
TCTTAGCTACCGCCACTAACAGCAAGGCTGAGAACAACCAGTACTTTGGA
GGTACGTTTCACTGCTCATTTCATTTTAACATTCCTTTTGCATGCAATCC
CGATCCTCACACTATTCTTTCTGTCTTTTGGCCGTCAAACAGCTGCCATC
GGTCTCGTGGTTCTCGTTGGTGCCATCGCTGTGGGTCCCATCAGCGGCGG
TGCGTTCAATCCTGCAGTCGTGATTGGTCTTAACCTCATCAAGCACTTCT
GGAAGATTCCGTATATGCTGTGGGTTTCTCTCGCTAACATGGCCGGTGCT
ATCGCTGGAGCCGGTGTGTTCTACATCGTTGCACCGGATGAGTTTGAACA
TTTCTCTGAGGCCGCTCATCAATTGAGAGATGAAGCGGCTAATCTTATTC
CCAATCGCACCTGA

Coding sequence (CDS) from alignment at NODE_69_length_56878_cov_4.412084:18379..19192-

>Gcaud9505.t1 ID=Gcaud9505.t1|Name=Gcaud9505.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=723bp|location=Sequence derived from alignment at NODE_69_length_56878_cov_4.412084:18379..19192- (Gracilaria caudata M_176_S67 male)
ATGGCTCTCGAGGAGTTCCGTACAAAGTTTGGAAAGGTCATGATGGAGCT
AGTGGCTACTGCCATGCTCGTCATGACCATTCAGATCTCCGTAGCCGTCT
CCCCAGGGCTTGCTCCCGTAGCGATTGGTCTGGTGCTTGTGCTTCTTGTG
TATGCTGCTGCTCCAATCTCTGGTGGACATGTGAATCCAGCCGTTACCTT
TTCTGTTTTCCTGCGTGGAAAGATTTCTTTGGATGAGATGTTGTTGTACT
GGATCTTCCAGGTTGGTGGTGGTGCACTCGGTGCACTATTGGGCGCCCTT
ATTTCAGGCTCCCTTTCCGCCGTCCAGATTGGAGAGGGCCACAACTTTCT
TCAGGCTTTTGTCGCTGAGTTTACTTTCACCTCCTTGTTGTGCTTTGTCG
TCTTAGCTACCGCCACTAACAGCAAGGCTGAGAACAACCAGTACTTTGGA
GCTGCCATCGGTCTCGTGGTTCTCGTTGGTGCCATCGCTGTGGGTCCCAT
CAGCGGCGGTGCGTTCAATCCTGCAGTCGTGATTGGTCTTAACCTCATCA
AGCACTTCTGGAAGATTCCGTATATGCTGTGGGTTTCTCTCGCTAACATG
GCCGGTGCTATCGCTGGAGCCGGTGTGTTCTACATCGTTGCACCGGATGA
GTTTGAACATTTCTCTGAGGCCGCTCATCAATTGAGAGATGAAGCGGCTA
ATCTTATTCCCAATCGCACCTGA