Gcaud9507.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud9507.t1
Unique NameGcaud9507.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length174
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_69_length_56878_cov_4.412084contigNODE_69_length_56878_cov_4.412084:21177..21765 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog321327.CYA_0587
PFAMsNTP_transf_9
Max annot lvl1117|Cyanobacteria
Evalue1.64e-10
EggNOG OGsCOG2343@1|root,COG2343@2|Bacteria,1G7U6@1117|Cyanobacteria,1H0SQ@1129|Synechococcus
Descriptionprotein conserved in bacteria
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9507Gcaud9507Gracilaria caudata M_176_S67 malegeneNODE_69_length_56878_cov_4.412084 21177..21765 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9507.t1Gcaud9507.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_69_length_56878_cov_4.412084 21177..21765 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9507.t1.start1Gcaud9507.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_69_length_56878_cov_4.412084 21177..21179 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9507.t1.CDS1Gcaud9507.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_69_length_56878_cov_4.412084 21177..21419 +
Gcaud9507.t1.CDS2Gcaud9507.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_69_length_56878_cov_4.412084 21487..21765 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9507.t1.exon1Gcaud9507.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_69_length_56878_cov_4.412084 21177..21419 +
Gcaud9507.t1.exon2Gcaud9507.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_69_length_56878_cov_4.412084 21487..21765 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9507.t1.intron1Gcaud9507.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_69_length_56878_cov_4.412084 21420..21486 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9507.t1.stop1Gcaud9507.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_69_length_56878_cov_4.412084 21763..21765 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud9507.t1 ID=Gcaud9507.t1|Name=Gcaud9507.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=174bp
MHKVLPAFTHYGFAKRRQEARTQTQQVICSRRRQTTDEGKKQSGKHPKKP
RSRTYEKRNRPSRTIQAIWSGHVIAESDDYEFMDGRFFFPGERVRWEHVE
KSERTRHHNPVGQMGMHDIVIRSKNNARVLRNRGAVMSFQNLKRPYEKLE
GYTFFWKGVQILGMRELKKPVVY*
back to top

spliced messenger RNA

>Gcaud9507.t1 ID=Gcaud9507.t1|Name=Gcaud9507.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=522bp|location=Sequence derived from alignment at NODE_69_length_56878_cov_4.412084:21177..21765+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACAAAGTGCTCCCCGCATTCACCCACTACGGCTTTGCAAAGCGACG
CCAGGAAGCGCGAACGCAAACACAACAAGTGATCTGTAGCCGACGACGAC
AAACTACGGACGAGGGCAAAAAGCAAAGCGGTAAGCATCCGAAGAAGCCC
CGCTCAAGAACGTATGAAAAGAGAAACAGACCTTCACGCACAATACAAGC
GATATGGAGTGGTCACGTAATAGCAGAAAGTGATGATTATGAATTTATGG
ATGGGCGGTTCTTTTTCCCCGGTGAGAGAGTGAGATGGGAGCATGTTGAG
AAGAGCGAGAGGACTAGACATCATAATCCCGTGGGCCAAATGGGAATGCA
TGACATTGTGATTCGTTCCAAGAATAATGCGAGGGTGCTTAGAAACCGTG
GCGCTGTGATGTCGTTTCAGAACTTGAAACGGCCGTACGAGAAACTTGAG
GGGTATACCTTCTTTTGGAAGGGTGTGCAGATTTTGGGCATGAGAGAACT
GAAAAAACCAGTCGTATACTGA
back to top

protein sequence of Gcaud9507.t1

>Gcaud9507.t1 ID=Gcaud9507.t1|Name=Gcaud9507.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=174bp
MHKVLPAFTHYGFAKRRQEARTQTQQVICSRRRQTTDEGKKQSGKHPKKP
RSRTYEKRNRPSRTIQAIWSGHVIAESDDYEFMDGRFFFPGERVRWEHVE
KSERTRHHNPVGQMGMHDIVIRSKNNARVLRNRGAVMSFQNLKRPYEKLE
GYTFFWKGVQILGMRELKKPVVY*
back to top

mRNA from alignment at NODE_69_length_56878_cov_4.412084:21177..21765+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud9507.t1 ID=Gcaud9507.t1|Name=Gcaud9507.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=589bp|location=Sequence derived from alignment at NODE_69_length_56878_cov_4.412084:21177..21765+ (Gracilaria caudata M_176_S67 male)
ATGCACAAAGTGCTCCCCGCATTCACCCACTACGGCTTTGCAAAGCGACG
CCAGGAAGCGCGAACGCAAACACAACAAGTGATCTGTAGCCGACGACGAC
AAACTACGGACGAGGGCAAAAAGCAAAGCGGTAAGCATCCGAAGAAGCCC
CGCTCAAGAACGTATGAAAAGAGAAACAGACCTTCACGCACAATACAAGC
GATATGGAGTGGTCACGTAATAGCAGAAAGTGATGATTATGAAGTACGTC
CCTCAAATTCGACTGGATAAATACGCGCTCCAGCAAAAGAATGGTTTCTG
ACTTGCTTAGTTTATGGATGGGCGGTTCTTTTTCCCCGGTGAGAGAGTGA
GATGGGAGCATGTTGAGAAGAGCGAGAGGACTAGACATCATAATCCCGTG
GGCCAAATGGGAATGCATGACATTGTGATTCGTTCCAAGAATAATGCGAG
GGTGCTTAGAAACCGTGGCGCTGTGATGTCGTTTCAGAACTTGAAACGGC
CGTACGAGAAACTTGAGGGGTATACCTTCTTTTGGAAGGGTGTGCAGATT
TTGGGCATGAGAGAACTGAAAAAACCAGTCGTATACTGA
back to top

Coding sequence (CDS) from alignment at NODE_69_length_56878_cov_4.412084:21177..21765+

>Gcaud9507.t1 ID=Gcaud9507.t1|Name=Gcaud9507.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=522bp|location=Sequence derived from alignment at NODE_69_length_56878_cov_4.412084:21177..21765+ (Gracilaria caudata M_176_S67 male)
ATGCACAAAGTGCTCCCCGCATTCACCCACTACGGCTTTGCAAAGCGACG
CCAGGAAGCGCGAACGCAAACACAACAAGTGATCTGTAGCCGACGACGAC
AAACTACGGACGAGGGCAAAAAGCAAAGCGGTAAGCATCCGAAGAAGCCC
CGCTCAAGAACGTATGAAAAGAGAAACAGACCTTCACGCACAATACAAGC
GATATGGAGTGGTCACGTAATAGCAGAAAGTGATGATTATGAATTTATGG
ATGGGCGGTTCTTTTTCCCCGGTGAGAGAGTGAGATGGGAGCATGTTGAG
AAGAGCGAGAGGACTAGACATCATAATCCCGTGGGCCAAATGGGAATGCA
TGACATTGTGATTCGTTCCAAGAATAATGCGAGGGTGCTTAGAAACCGTG
GCGCTGTGATGTCGTTTCAGAACTTGAAACGGCCGTACGAGAAACTTGAG
GGGTATACCTTCTTTTGGAAGGGTGTGCAGATTTTGGGCATGAGAGAACT
GAAAAAACCAGTCGTATACTGA
back to top