Gcaud9513.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud9513.t1
Unique Name	Gcaud9513.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	496

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_69_length_56878_cov_4.412084	contig	NODE_69_length_56878_cov_4.412084:35672..37159 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3218.PP1S79_54V6.1
PFAMs	SHMT
Max annot lvl	33090\|Viridiplantae
KEGG rclass	RC00022,RC00112,RC01583,RC02958
KEGG ko	ko:K00600
KEGG Reaction	R00945,R09099
KEGG Pathway	ko00260,ko00460,ko00630,ko00670,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko01523,map00260,map00460,map00630,map00670,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map01523
KEGG Module	M00140,M00141,M00346,M00532
GOs	GO:0001505,GO:0002376,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0003824,GO:0004372,GO:0005488,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0005759,GO:0005829,GO:0005840,GO:0005886,GO:0006082,GO:0006520,GO:0006544,GO:0006563,GO:0006807,GO:0006950,GO:0006952,GO:0006955,GO:0007623,GO:0008150,GO:0008152,GO:0008187,GO:0008219,GO:0008266,GO:0008270,GO:0009069,GO:0009266,GO:0009314,GO:0009409,GO:0009416,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009536,GO:0009570,GO:0009579,GO:0009626,GO:0009628,GO:0009853,GO:0009987,GO:0010035,GO:0010038,GO:0010319,GO:0012501,GO:0016020,GO:0016740,GO:0016741,GO:0016742,GO:0017144,GO:0019752,GO:0019866,GO:0022626,GO:0030964,GO:0031090,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031976,GO:0031984,GO:0032991,GO:0033554,GO:0034050,GO:0042133,GO:0042221,GO:0043094,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044434,GO:0044435,GO:0044444,GO:0044445,GO:0044446,GO:0044455,GO:0044464,GO:0045087,GO:0045271,GO:0046686,GO:0046872,GO:0046914,GO:0048046,GO:0048511,GO:0050896,GO:0050897,GO:0051716,GO:0065007,GO:0065008,GO:0070013,GO:0070469,GO:0071704,GO:0071944,GO:0097159,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901363,GO:1901564,GO:1901605,GO:1902494,GO:1990204,GO:1990904
Evalue	1.42e-233
EggNOG OGs	COG0112@1\|root,KOG2467@2759\|Eukaryota,37K7X@33090\|Viridiplantae,3GCUC@35493\|Streptophyta
EC	2.1.2.1
Description	Interconversion of serine and glycine
COG category	E
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9513	Gcaud9513	Gracilaria caudata M_176_S67 male	gene	NODE_69_length_56878_cov_4.412084 35672..37159 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9513.t1.start1	Gcaud9513.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_69_length_56878_cov_4.412084 35672..35674 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9513.t1.CDS1	Gcaud9513.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_69_length_56878_cov_4.412084 35672..37159 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9513.t1.exon1	Gcaud9513.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_69_length_56878_cov_4.412084 35672..37159 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9513.t1.stop1	Gcaud9513.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_69_length_56878_cov_4.412084 37157..37159 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9513.t1	Gcaud9513.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_69_length_56878_cov_4.412084 35672..37159 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_69_length_56878_cov_4.412084:35672..37159+
coding sequence from alignment at NODE_69_length_56878_cov_4.412084:35672..37159+

mRNA sequence

>Gcaud9513.t1 ID=Gcaud9513.t1|Name=Gcaud9513.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=496bp
MLRSTFLRNVSRRFLATPAVSPAATAPSSLNAPLSEVDPELFDIIEHEKA
RQIKSIQLIPSENFTSRAVLEAVGSVMTNKYSEGYPGARYYGGNEFIDMS
ERLCQKRALDAFRVSPDEWGVNVQALSGSPSNLAVYTALLKPHDRILSLD
LPHGGHLSHGFMTDKKRVSATSIFFESMPYRLNEKTGFIDYDKLEESAVL
FRPKLIIAGASAYSRHYDYPRMRAIADKVGAYLHADIAHISGMVAAGVIP
SPFEYADVVTTTTHKALRGPRGALIFFRKGVRSINKKGEEVMYNLENPIN
SAVFPGLQGGPHNHTIAALAVALKQAQEPEFVTYQQKVLDNSQVLAKELM
DRGYDLVSGGTENHLMLVNLRTKDMDGARAERVLELSGIALNKNTVPGDK
SAFNPGGIRMGTHAMTTRGCDTEDFKSIAGYLDRGIAIATEVKKELGPDA
KIAAFREAVNDGAGAAEIKALKEEVEEFALAFEPIGFDRADMVYP*

spliced messenger RNA

>Gcaud9513.t1 ID=Gcaud9513.t1|Name=Gcaud9513.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1488bp|location=Sequence derived from alignment at NODE_69_length_56878_cov_4.412084:35672..37159+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGCGTTCCACCTTCCTGCGTAACGTTTCTCGACGTTTTCTGGCTAC
TCCAGCTGTCAGTCCAGCTGCAACTGCACCATCCTCTCTCAATGCGCCTC
TTTCAGAAGTCGACCCCGAATTGTTCGATATTATTGAACATGAGAAGGCA
CGCCAGATCAAGTCTATTCAGTTGATTCCGTCGGAAAACTTCACATCTCG
TGCTGTCTTGGAGGCTGTCGGGTCAGTGATGACCAATAAGTATTCTGAAG
GATATCCGGGAGCGCGATATTACGGAGGAAATGAATTCATTGACATGAGT
GAGCGCTTGTGTCAGAAGCGTGCACTTGATGCGTTCCGTGTCTCTCCAGA
CGAGTGGGGCGTGAACGTGCAGGCACTCTCTGGAAGTCCTTCAAATCTTG
CGGTGTACACAGCGCTTCTCAAACCACACGACAGGATTCTCAGCCTTGAT
CTGCCACATGGTGGACATCTGAGCCATGGTTTCATGACCGATAAGAAGCG
TGTAAGCGCCACCTCCATCTTCTTTGAGTCCATGCCGTATCGACTTAATG
AAAAGACTGGATTCATTGACTATGACAAACTGGAAGAGTCAGCTGTACTC
TTCAGACCCAAGCTAATCATTGCTGGTGCTAGTGCGTACTCTAGACACTA
TGACTACCCTCGCATGCGCGCCATCGCGGATAAGGTTGGTGCGTACTTGC
ACGCCGATATCGCTCATATTTCTGGTATGGTTGCCGCTGGAGTAATACCC
TCACCATTTGAGTATGCTGACGTAGTTACCACTACGACTCACAAGGCTCT
TCGTGGTCCAAGAGGAGCTCTGATTTTCTTCCGCAAGGGAGTTCGTTCCA
TCAATAAGAAGGGCGAAGAGGTTATGTACAACCTCGAGAACCCCATCAAC
TCTGCTGTGTTCCCAGGACTACAAGGAGGACCACACAACCACACAATTGC
TGCTTTGGCGGTTGCTCTCAAACAGGCTCAGGAACCTGAGTTTGTGACCT
ACCAACAGAAGGTACTAGATAATTCTCAAGTCCTTGCCAAAGAACTCATG
GACAGAGGCTACGACCTGGTTTCAGGTGGAACTGAAAATCATCTAATGCT
GGTAAATCTGAGGACGAAGGATATGGATGGTGCTCGTGCAGAACGGGTGC
TGGAGTTGTCTGGAATCGCACTGAATAAGAACACTGTTCCCGGTGACAAG
AGCGCATTCAACCCAGGAGGTATTCGTATGGGAACACATGCTATGACTAC
CAGAGGATGTGACACGGAAGACTTCAAGTCTATCGCTGGGTACTTGGATC
GTGGAATTGCTATCGCAACTGAGGTGAAGAAGGAATTGGGACCTGACGCA
AAGATTGCAGCATTCCGGGAGGCGGTAAACGATGGCGCGGGCGCTGCGGA
AATCAAGGCTCTGAAGGAAGAAGTAGAAGAGTTTGCGTTGGCATTTGAAC
CAATTGGATTCGACCGGGCTGATATGGTCTACCCGTGA

protein sequence of Gcaud9513.t1

>Gcaud9513.t1 ID=Gcaud9513.t1|Name=Gcaud9513.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=496bp
MLRSTFLRNVSRRFLATPAVSPAATAPSSLNAPLSEVDPELFDIIEHEKA
RQIKSIQLIPSENFTSRAVLEAVGSVMTNKYSEGYPGARYYGGNEFIDMS
ERLCQKRALDAFRVSPDEWGVNVQALSGSPSNLAVYTALLKPHDRILSLD
LPHGGHLSHGFMTDKKRVSATSIFFESMPYRLNEKTGFIDYDKLEESAVL
FRPKLIIAGASAYSRHYDYPRMRAIADKVGAYLHADIAHISGMVAAGVIP
SPFEYADVVTTTTHKALRGPRGALIFFRKGVRSINKKGEEVMYNLENPIN
SAVFPGLQGGPHNHTIAALAVALKQAQEPEFVTYQQKVLDNSQVLAKELM
DRGYDLVSGGTENHLMLVNLRTKDMDGARAERVLELSGIALNKNTVPGDK
SAFNPGGIRMGTHAMTTRGCDTEDFKSIAGYLDRGIAIATEVKKELGPDA
KIAAFREAVNDGAGAAEIKALKEEVEEFALAFEPIGFDRADMVYP*

mRNA from alignment at NODE_69_length_56878_cov_4.412084:35672..37159+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud9513.t1 ID=Gcaud9513.t1|Name=Gcaud9513.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1488bp|location=Sequence derived from alignment at NODE_69_length_56878_cov_4.412084:35672..37159+ (Gracilaria caudata M_176_S67 male)
ATGCTGCGTTCCACCTTCCTGCGTAACGTTTCTCGACGTTTTCTGGCTAC
TCCAGCTGTCAGTCCAGCTGCAACTGCACCATCCTCTCTCAATGCGCCTC
TTTCAGAAGTCGACCCCGAATTGTTCGATATTATTGAACATGAGAAGGCA
CGCCAGATCAAGTCTATTCAGTTGATTCCGTCGGAAAACTTCACATCTCG
TGCTGTCTTGGAGGCTGTCGGGTCAGTGATGACCAATAAGTATTCTGAAG
GATATCCGGGAGCGCGATATTACGGAGGAAATGAATTCATTGACATGAGT
GAGCGCTTGTGTCAGAAGCGTGCACTTGATGCGTTCCGTGTCTCTCCAGA
CGAGTGGGGCGTGAACGTGCAGGCACTCTCTGGAAGTCCTTCAAATCTTG
CGGTGTACACAGCGCTTCTCAAACCACACGACAGGATTCTCAGCCTTGAT
CTGCCACATGGTGGACATCTGAGCCATGGTTTCATGACCGATAAGAAGCG
TGTAAGCGCCACCTCCATCTTCTTTGAGTCCATGCCGTATCGACTTAATG
AAAAGACTGGATTCATTGACTATGACAAACTGGAAGAGTCAGCTGTACTC
TTCAGACCCAAGCTAATCATTGCTGGTGCTAGTGCGTACTCTAGACACTA
TGACTACCCTCGCATGCGCGCCATCGCGGATAAGGTTGGTGCGTACTTGC
ACGCCGATATCGCTCATATTTCTGGTATGGTTGCCGCTGGAGTAATACCC
TCACCATTTGAGTATGCTGACGTAGTTACCACTACGACTCACAAGGCTCT
TCGTGGTCCAAGAGGAGCTCTGATTTTCTTCCGCAAGGGAGTTCGTTCCA
TCAATAAGAAGGGCGAAGAGGTTATGTACAACCTCGAGAACCCCATCAAC
TCTGCTGTGTTCCCAGGACTACAAGGAGGACCACACAACCACACAATTGC
TGCTTTGGCGGTTGCTCTCAAACAGGCTCAGGAACCTGAGTTTGTGACCT
ACCAACAGAAGGTACTAGATAATTCTCAAGTCCTTGCCAAAGAACTCATG
GACAGAGGCTACGACCTGGTTTCAGGTGGAACTGAAAATCATCTAATGCT
GGTAAATCTGAGGACGAAGGATATGGATGGTGCTCGTGCAGAACGGGTGC
TGGAGTTGTCTGGAATCGCACTGAATAAGAACACTGTTCCCGGTGACAAG
AGCGCATTCAACCCAGGAGGTATTCGTATGGGAACACATGCTATGACTAC
CAGAGGATGTGACACGGAAGACTTCAAGTCTATCGCTGGGTACTTGGATC
GTGGAATTGCTATCGCAACTGAGGTGAAGAAGGAATTGGGACCTGACGCA
AAGATTGCAGCATTCCGGGAGGCGGTAAACGATGGCGCGGGCGCTGCGGA
AATCAAGGCTCTGAAGGAAGAAGTAGAAGAGTTTGCGTTGGCATTTGAAC
CAATTGGATTCGACCGGGCTGATATGGTCTACCCGTGA

Coding sequence (CDS) from alignment at NODE_69_length_56878_cov_4.412084:35672..37159+

>Gcaud9513.t1 ID=Gcaud9513.t1|Name=Gcaud9513.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1488bp|location=Sequence derived from alignment at NODE_69_length_56878_cov_4.412084:35672..37159+ (Gracilaria caudata M_176_S67 male)
ATGCTGCGTTCCACCTTCCTGCGTAACGTTTCTCGACGTTTTCTGGCTAC
TCCAGCTGTCAGTCCAGCTGCAACTGCACCATCCTCTCTCAATGCGCCTC
TTTCAGAAGTCGACCCCGAATTGTTCGATATTATTGAACATGAGAAGGCA
CGCCAGATCAAGTCTATTCAGTTGATTCCGTCGGAAAACTTCACATCTCG
TGCTGTCTTGGAGGCTGTCGGGTCAGTGATGACCAATAAGTATTCTGAAG
GATATCCGGGAGCGCGATATTACGGAGGAAATGAATTCATTGACATGAGT
GAGCGCTTGTGTCAGAAGCGTGCACTTGATGCGTTCCGTGTCTCTCCAGA
CGAGTGGGGCGTGAACGTGCAGGCACTCTCTGGAAGTCCTTCAAATCTTG
CGGTGTACACAGCGCTTCTCAAACCACACGACAGGATTCTCAGCCTTGAT
CTGCCACATGGTGGACATCTGAGCCATGGTTTCATGACCGATAAGAAGCG
TGTAAGCGCCACCTCCATCTTCTTTGAGTCCATGCCGTATCGACTTAATG
AAAAGACTGGATTCATTGACTATGACAAACTGGAAGAGTCAGCTGTACTC
TTCAGACCCAAGCTAATCATTGCTGGTGCTAGTGCGTACTCTAGACACTA
TGACTACCCTCGCATGCGCGCCATCGCGGATAAGGTTGGTGCGTACTTGC
ACGCCGATATCGCTCATATTTCTGGTATGGTTGCCGCTGGAGTAATACCC
TCACCATTTGAGTATGCTGACGTAGTTACCACTACGACTCACAAGGCTCT
TCGTGGTCCAAGAGGAGCTCTGATTTTCTTCCGCAAGGGAGTTCGTTCCA
TCAATAAGAAGGGCGAAGAGGTTATGTACAACCTCGAGAACCCCATCAAC
TCTGCTGTGTTCCCAGGACTACAAGGAGGACCACACAACCACACAATTGC
TGCTTTGGCGGTTGCTCTCAAACAGGCTCAGGAACCTGAGTTTGTGACCT
ACCAACAGAAGGTACTAGATAATTCTCAAGTCCTTGCCAAAGAACTCATG
GACAGAGGCTACGACCTGGTTTCAGGTGGAACTGAAAATCATCTAATGCT
GGTAAATCTGAGGACGAAGGATATGGATGGTGCTCGTGCAGAACGGGTGC
TGGAGTTGTCTGGAATCGCACTGAATAAGAACACTGTTCCCGGTGACAAG
AGCGCATTCAACCCAGGAGGTATTCGTATGGGAACACATGCTATGACTAC
CAGAGGATGTGACACGGAAGACTTCAAGTCTATCGCTGGGTACTTGGATC
GTGGAATTGCTATCGCAACTGAGGTGAAGAAGGAATTGGGACCTGACGCA
AAGATTGCAGCATTCCGGGAGGCGGTAAACGATGGCGCGGGCGCTGCGGA
AATCAAGGCTCTGAAGGAAGAAGTAGAAGAGTTTGCGTTGGCATTTGAAC
CAATTGGATTCGACCGGGCTGATATGGTCTACCCGTGA