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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 4081.Solyc02g021470.2.1 |
| PFAMs | Cullin,Cullin_Nedd8 |
| Max annot lvl | 35493|Streptophyta |
| KEGG ko | ko:K10609 |
| KEGG Pathway | ko03420,ko04120,map03420,map04120 |
| KEGG Module | M00385,M00386 |
| GOs | GO:0000003,GO:0000151,GO:0000209,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006464,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0007165,GO:0007275,GO:0008150,GO:0008152,GO:0009314,GO:0009416,GO:0009628,GO:0009639,GO:0009640,GO:0009648,GO:0009719,GO:0009725,GO:0009743,GO:0009755,GO:0009756,GO:0009790,GO:0009791,GO:0009793,GO:0009908,GO:0009987,GO:0010033,GO:0010099,GO:0010100,GO:0010154,GO:0010182,GO:0010228,GO:0016567,GO:0019538,GO:0019899,GO:0022414,GO:0023052,GO:0031461,GO:0031625,GO:0032446,GO:0032501,GO:0032502,GO:0032870,GO:0032991,GO:0033554,GO:0034641,GO:0036211,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044389,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048316,GO:0048366,GO:0048367,GO:0048519,GO:0048572,GO:0048573,GO:0048575,GO:0048580,GO:0048581,GO:0048583,GO:0048585,GO:0048608,GO:0048731,GO:0048825,GO:0048827,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051239,GO:0051241,GO:0051716,GO:0061458,GO:0065007,GO:0070647,GO:0070887,GO:0071310,GO:0071322,GO:0071495,GO:0071704,GO:0080008,GO:0090304,GO:0090567,GO:0099402,GO:1901360,GO:1901564,GO:1901700,GO:1901701,GO:1902494,GO:1990234,GO:2000026,GO:2000030 |
| Evalue | 5.88e-244 |
| EggNOG OGs | COG5647@1|root,KOG2167@2759|Eukaryota,37ICM@33090|Viridiplantae,3GA8A@35493|Streptophyta,44ERT@71274|asterids |
| Description | Belongs to the cullin family |
| COG category | D |
| BRITE | ko00000,ko00001,ko00002,ko03400,ko04121,ko04147 |
Relationships
This mRNA is a part of the following gene feature(s):
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud9509.t1.stop1 | Gcaud9509.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_69_length_56878_cov_4.412084 24908..24910 - |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud9509.t1.start1 | Gcaud9509.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_69_length_56878_cov_4.412084 27206..27208 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud9509.t1 ID=Gcaud9509.t1|Name=Gcaud9509.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=767bp MASGAQTTSARGGHAARTGASRPSPSQRGRSGAPRKMRIRAYDRKPSAPP QLFRHAWNTHLKPAVDAVHQSRPVPSSLEELYGHVHDVVLHRHAPALYDA LRDACDRHIAAGISELATVRASESAFLGAVLAEWDSFCAHMLRIRQIFLY LDRTYIVQAAHPQARSFWDMGLLLFRTHFSTAPNLQTHTVNCLLSLINSE RDGDAVDISLIRNLLLMFSAIGTYDQAFEKPFLGDTDAYYRNESRNLVAS RDVPAYLKHAEHRIFDESQRALRTLDPRTRNPLISTVEKRLVSDHVLPLL DNGFSSMCDNHRRDDLKRCYVVLSRASDHMPPDSDSPNELMKSRLIDYVK KVGRAIVMDKSKDPEMVQSLLTLKSRLDDLVNYSFDGTEAFNIAINFAFE SFVNARENKPAELIAKFVDGILRTGNKGFSEEQLESTLDKALTLFRFIDG KDVFEAFYNKDLAKRLLNDKSASLDLEKSMISKLKQECGRQFTSKLEAMF RDVDTSKDLMQSFRTHKVSKTKLPPGVDLNVFVLEAARWPLSTQPSNVKL PQSLIDCQEVFKNFYLTKHSVRKLAWQHVDGSCTVRARFPEGIKILQLSL YQTIVMVLFNDADEISYLDIAEATGIDEQPLKRTLLSLACGRARVLQKRP KGPRVVSTDSFEFNKKFTHRLTKLKINAIQMKETVEENAATTKKVFQERN YQIDAAVVRIMKTRRTLQHTALLSEIYNQLRFPHKPGDVKKRIESLIERE YLERDENNPQTYHYLA* back to topspliced messenger RNA >Gcaud9509.t1 ID=Gcaud9509.t1|Name=Gcaud9509.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2301bp|location=Sequence derived from alignment at NODE_69_length_56878_cov_4.412084:24908..27208- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGGCCAGCGGCGCGCAGACCACCTCCGCGCGCGGCGGCCACGCGGCGCG CACTGGCGCGTCTCGCCCATCGCCATCGCAACGCGGCCGCTCCGGCGCGC CGCGCAAGATGCGCATTCGCGCCTACGACCGAAAGCCCTCCGCGCCGCCG CAGCTGTTTCGCCACGCTTGGAACACGCACCTCAAGCCTGCTGTCGACGC CGTCCACCAGAGTCGTCCAGTGCCCTCCTCTCTGGAGGAGCTGTACGGTC ATGTGCACGATGTTGTACTGCATCGTCATGCACCCGCGCTCTATGACGCG CTGCGCGATGCCTGTGATCGTCATATTGCGGCTGGCATATCCGAGCTTGC GACCGTGCGCGCCAGCGAGAGCGCGTTTCTTGGAGCTGTTCTGGCCGAGT GGGACTCGTTTTGCGCCCATATGCTGCGCATTCGACAGATCTTTCTTTAC TTGGATCGTACTTACATCGTACAGGCTGCCCATCCTCAGGCGCGTTCCTT CTGGGATATGGGTCTTCTCCTGTTCCGCACCCACTTCTCTACTGCGCCTA ACTTACAAACCCACACCGTTAATTGTCTCCTTTCCCTCATTAACAGTGAA CGCGACGGGGACGCCGTCGATATCTCGCTCATTCGCAACCTCCTTCTCAT GTTTTCCGCCATAGGCACCTACGACCAGGCGTTTGAGAAACCCTTTTTAG GGGATACGGACGCCTACTATCGCAACGAATCACGCAATCTCGTCGCTTCA CGTGATGTGCCAGCCTACCTCAAACACGCTGAGCATCGTATCTTCGATGA ATCCCAGCGCGCCTTGCGAACCCTTGATCCGCGAACTCGTAATCCGCTTA TATCAACAGTTGAGAAGCGTCTCGTCTCTGACCACGTACTTCCCCTGCTC GATAATGGCTTCAGTTCAATGTGCGATAACCATCGCAGGGATGATCTTAA GCGTTGCTACGTCGTACTTTCGCGTGCCAGCGATCACATGCCACCGGACT CTGACTCTCCAAACGAACTCATGAAATCTCGACTCATTGACTACGTCAAG AAAGTCGGTCGTGCTATTGTGATGGACAAGTCCAAAGACCCAGAAATGGT TCAGTCCTTGCTTACACTCAAATCGAGGCTCGATGATCTTGTTAACTATT CATTTGATGGTACGGAGGCCTTCAACATTGCCATCAATTTTGCGTTCGAG TCATTTGTAAACGCTCGTGAAAACAAGCCTGCGGAGCTCATTGCCAAGTT TGTCGATGGTATTCTACGCACTGGCAACAAGGGGTTTTCAGAGGAACAAC TGGAGTCCACTTTGGACAAGGCCCTAACTCTCTTCCGCTTCATCGACGGC AAAGACGTGTTTGAGGCTTTTTATAACAAAGATCTTGCAAAGCGTTTGCT TAACGACAAGTCTGCTAGTTTAGATCTCGAAAAGAGTATGATTTCCAAAC TAAAGCAGGAATGTGGGCGACAGTTCACGTCTAAACTGGAAGCTATGTTC AGGGACGTCGACACAAGCAAAGATCTTATGCAGAGTTTCAGAACGCATAA GGTGTCGAAGACCAAGTTACCCCCTGGCGTTGACCTTAATGTGTTCGTCT TGGAAGCTGCTCGATGGCCACTTAGCACACAGCCTTCGAATGTCAAGCTG CCCCAGTCACTTATTGATTGCCAGGAGGTATTCAAGAACTTTTATCTCAC CAAACATAGCGTTCGCAAACTTGCATGGCAGCATGTAGATGGATCTTGCA CAGTGAGAGCACGTTTTCCAGAGGGAATCAAGATACTACAGCTCTCTTTG TATCAAACAATAGTAATGGTTCTCTTCAATGACGCTGACGAGATCTCATA CCTTGACATTGCTGAAGCAACCGGAATTGACGAACAGCCCTTGAAACGAA CCCTGCTTTCGCTTGCATGTGGAAGAGCTAGGGTGTTGCAGAAGAGGCCC AAAGGTCCTAGGGTTGTGTCTACCGATTCTTTTGAATTTAATAAGAAGTT CACCCATCGTCTGACAAAACTCAAGATTAATGCTATTCAAATGAAGGAAA CTGTAGAAGAAAATGCCGCTACAACAAAGAAGGTGTTCCAAGAAAGAAAC TATCAGATCGATGCTGCTGTTGTACGCATCATGAAGACAAGACGCACATT GCAACATACTGCTTTGCTTTCGGAAATTTACAATCAACTGCGATTTCCAC ATAAGCCTGGGGACGTGAAGAAGCGAATAGAATCACTCATTGAACGCGAG TACCTGGAACGAGATGAGAACAATCCGCAGACCTATCACTACTTGGCCTG A back to topprotein sequence of Gcaud9509.t1 >Gcaud9509.t1 ID=Gcaud9509.t1|Name=Gcaud9509.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=767bp
MASGAQTTSARGGHAARTGASRPSPSQRGRSGAPRKMRIRAYDRKPSAPP QLFRHAWNTHLKPAVDAVHQSRPVPSSLEELYGHVHDVVLHRHAPALYDA LRDACDRHIAAGISELATVRASESAFLGAVLAEWDSFCAHMLRIRQIFLY LDRTYIVQAAHPQARSFWDMGLLLFRTHFSTAPNLQTHTVNCLLSLINSE RDGDAVDISLIRNLLLMFSAIGTYDQAFEKPFLGDTDAYYRNESRNLVAS RDVPAYLKHAEHRIFDESQRALRTLDPRTRNPLISTVEKRLVSDHVLPLL DNGFSSMCDNHRRDDLKRCYVVLSRASDHMPPDSDSPNELMKSRLIDYVK KVGRAIVMDKSKDPEMVQSLLTLKSRLDDLVNYSFDGTEAFNIAINFAFE SFVNARENKPAELIAKFVDGILRTGNKGFSEEQLESTLDKALTLFRFIDG KDVFEAFYNKDLAKRLLNDKSASLDLEKSMISKLKQECGRQFTSKLEAMF RDVDTSKDLMQSFRTHKVSKTKLPPGVDLNVFVLEAARWPLSTQPSNVKL PQSLIDCQEVFKNFYLTKHSVRKLAWQHVDGSCTVRARFPEGIKILQLSL YQTIVMVLFNDADEISYLDIAEATGIDEQPLKRTLLSLACGRARVLQKRP KGPRVVSTDSFEFNKKFTHRLTKLKINAIQMKETVEENAATTKKVFQERN YQIDAAVVRIMKTRRTLQHTALLSEIYNQLRFPHKPGDVKKRIESLIERE YLERDENNPQTYHYLA* back to topmRNA from alignment at NODE_69_length_56878_cov_4.412084:24908..27208- Legend: polypeptideCDSexonstart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud9509.t1 ID=Gcaud9509.t1|Name=Gcaud9509.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2301bp|location=Sequence derived from alignment at NODE_69_length_56878_cov_4.412084:24908..27208- (Gracilaria caudata M_176_S67 male) ATGGCCAGCGGCGCGCAGACCACCTCCGCGCGCGGCGGCCACGCGGCGCG
CACTGGCGCGTCTCGCCCATCGCCATCGCAACGCGGCCGCTCCGGCGCGC
CGCGCAAGATGCGCATTCGCGCCTACGACCGAAAGCCCTCCGCGCCGCCG
CAGCTGTTTCGCCACGCTTGGAACACGCACCTCAAGCCTGCTGTCGACGC
CGTCCACCAGAGTCGTCCAGTGCCCTCCTCTCTGGAGGAGCTGTACGGTC
ATGTGCACGATGTTGTACTGCATCGTCATGCACCCGCGCTCTATGACGCG
CTGCGCGATGCCTGTGATCGTCATATTGCGGCTGGCATATCCGAGCTTGC
GACCGTGCGCGCCAGCGAGAGCGCGTTTCTTGGAGCTGTTCTGGCCGAGT
GGGACTCGTTTTGCGCCCATATGCTGCGCATTCGACAGATCTTTCTTTAC
TTGGATCGTACTTACATCGTACAGGCTGCCCATCCTCAGGCGCGTTCCTT
CTGGGATATGGGTCTTCTCCTGTTCCGCACCCACTTCTCTACTGCGCCTA
ACTTACAAACCCACACCGTTAATTGTCTCCTTTCCCTCATTAACAGTGAA
CGCGACGGGGACGCCGTCGATATCTCGCTCATTCGCAACCTCCTTCTCAT
GTTTTCCGCCATAGGCACCTACGACCAGGCGTTTGAGAAACCCTTTTTAG
GGGATACGGACGCCTACTATCGCAACGAATCACGCAATCTCGTCGCTTCA
CGTGATGTGCCAGCCTACCTCAAACACGCTGAGCATCGTATCTTCGATGA
ATCCCAGCGCGCCTTGCGAACCCTTGATCCGCGAACTCGTAATCCGCTTA
TATCAACAGTTGAGAAGCGTCTCGTCTCTGACCACGTACTTCCCCTGCTC
GATAATGGCTTCAGTTCAATGTGCGATAACCATCGCAGGGATGATCTTAA
GCGTTGCTACGTCGTACTTTCGCGTGCCAGCGATCACATGCCACCGGACT
CTGACTCTCCAAACGAACTCATGAAATCTCGACTCATTGACTACGTCAAG
AAAGTCGGTCGTGCTATTGTGATGGACAAGTCCAAAGACCCAGAAATGGT
TCAGTCCTTGCTTACACTCAAATCGAGGCTCGATGATCTTGTTAACTATT
CATTTGATGGTACGGAGGCCTTCAACATTGCCATCAATTTTGCGTTCGAG
TCATTTGTAAACGCTCGTGAAAACAAGCCTGCGGAGCTCATTGCCAAGTT
TGTCGATGGTATTCTACGCACTGGCAACAAGGGGTTTTCAGAGGAACAAC
TGGAGTCCACTTTGGACAAGGCCCTAACTCTCTTCCGCTTCATCGACGGC
AAAGACGTGTTTGAGGCTTTTTATAACAAAGATCTTGCAAAGCGTTTGCT
TAACGACAAGTCTGCTAGTTTAGATCTCGAAAAGAGTATGATTTCCAAAC
TAAAGCAGGAATGTGGGCGACAGTTCACGTCTAAACTGGAAGCTATGTTC
AGGGACGTCGACACAAGCAAAGATCTTATGCAGAGTTTCAGAACGCATAA
GGTGTCGAAGACCAAGTTACCCCCTGGCGTTGACCTTAATGTGTTCGTCT
TGGAAGCTGCTCGATGGCCACTTAGCACACAGCCTTCGAATGTCAAGCTG
CCCCAGTCACTTATTGATTGCCAGGAGGTATTCAAGAACTTTTATCTCAC
CAAACATAGCGTTCGCAAACTTGCATGGCAGCATGTAGATGGATCTTGCA
CAGTGAGAGCACGTTTTCCAGAGGGAATCAAGATACTACAGCTCTCTTTG
TATCAAACAATAGTAATGGTTCTCTTCAATGACGCTGACGAGATCTCATA
CCTTGACATTGCTGAAGCAACCGGAATTGACGAACAGCCCTTGAAACGAA
CCCTGCTTTCGCTTGCATGTGGAAGAGCTAGGGTGTTGCAGAAGAGGCCC
AAAGGTCCTAGGGTTGTGTCTACCGATTCTTTTGAATTTAATAAGAAGTT
CACCCATCGTCTGACAAAACTCAAGATTAATGCTATTCAAATGAAGGAAA
CTGTAGAAGAAAATGCCGCTACAACAAAGAAGGTGTTCCAAGAAAGAAAC
TATCAGATCGATGCTGCTGTTGTACGCATCATGAAGACAAGACGCACATT
GCAACATACTGCTTTGCTTTCGGAAATTTACAATCAACTGCGATTTCCAC
ATAAGCCTGGGGACGTGAAGAAGCGAATAGAATCACTCATTGAACGCGAG
TACCTGGAACGAGATGAGAACAATCCGCAGACCTATCACTACTTGGCCTG
A back to topCoding sequence (CDS) from alignment at NODE_69_length_56878_cov_4.412084:24908..27208- >Gcaud9509.t1 ID=Gcaud9509.t1|Name=Gcaud9509.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2301bp|location=Sequence derived from alignment at NODE_69_length_56878_cov_4.412084:24908..27208- (Gracilaria caudata M_176_S67 male) ATGGCCAGCGGCGCGCAGACCACCTCCGCGCGCGGCGGCCACGCGGCGCG CACTGGCGCGTCTCGCCCATCGCCATCGCAACGCGGCCGCTCCGGCGCGC CGCGCAAGATGCGCATTCGCGCCTACGACCGAAAGCCCTCCGCGCCGCCG CAGCTGTTTCGCCACGCTTGGAACACGCACCTCAAGCCTGCTGTCGACGC CGTCCACCAGAGTCGTCCAGTGCCCTCCTCTCTGGAGGAGCTGTACGGTC ATGTGCACGATGTTGTACTGCATCGTCATGCACCCGCGCTCTATGACGCG CTGCGCGATGCCTGTGATCGTCATATTGCGGCTGGCATATCCGAGCTTGC GACCGTGCGCGCCAGCGAGAGCGCGTTTCTTGGAGCTGTTCTGGCCGAGT GGGACTCGTTTTGCGCCCATATGCTGCGCATTCGACAGATCTTTCTTTAC TTGGATCGTACTTACATCGTACAGGCTGCCCATCCTCAGGCGCGTTCCTT CTGGGATATGGGTCTTCTCCTGTTCCGCACCCACTTCTCTACTGCGCCTA ACTTACAAACCCACACCGTTAATTGTCTCCTTTCCCTCATTAACAGTGAA CGCGACGGGGACGCCGTCGATATCTCGCTCATTCGCAACCTCCTTCTCAT GTTTTCCGCCATAGGCACCTACGACCAGGCGTTTGAGAAACCCTTTTTAG GGGATACGGACGCCTACTATCGCAACGAATCACGCAATCTCGTCGCTTCA CGTGATGTGCCAGCCTACCTCAAACACGCTGAGCATCGTATCTTCGATGA ATCCCAGCGCGCCTTGCGAACCCTTGATCCGCGAACTCGTAATCCGCTTA TATCAACAGTTGAGAAGCGTCTCGTCTCTGACCACGTACTTCCCCTGCTC GATAATGGCTTCAGTTCAATGTGCGATAACCATCGCAGGGATGATCTTAA GCGTTGCTACGTCGTACTTTCGCGTGCCAGCGATCACATGCCACCGGACT CTGACTCTCCAAACGAACTCATGAAATCTCGACTCATTGACTACGTCAAG AAAGTCGGTCGTGCTATTGTGATGGACAAGTCCAAAGACCCAGAAATGGT TCAGTCCTTGCTTACACTCAAATCGAGGCTCGATGATCTTGTTAACTATT CATTTGATGGTACGGAGGCCTTCAACATTGCCATCAATTTTGCGTTCGAG TCATTTGTAAACGCTCGTGAAAACAAGCCTGCGGAGCTCATTGCCAAGTT TGTCGATGGTATTCTACGCACTGGCAACAAGGGGTTTTCAGAGGAACAAC TGGAGTCCACTTTGGACAAGGCCCTAACTCTCTTCCGCTTCATCGACGGC AAAGACGTGTTTGAGGCTTTTTATAACAAAGATCTTGCAAAGCGTTTGCT TAACGACAAGTCTGCTAGTTTAGATCTCGAAAAGAGTATGATTTCCAAAC TAAAGCAGGAATGTGGGCGACAGTTCACGTCTAAACTGGAAGCTATGTTC AGGGACGTCGACACAAGCAAAGATCTTATGCAGAGTTTCAGAACGCATAA GGTGTCGAAGACCAAGTTACCCCCTGGCGTTGACCTTAATGTGTTCGTCT TGGAAGCTGCTCGATGGCCACTTAGCACACAGCCTTCGAATGTCAAGCTG CCCCAGTCACTTATTGATTGCCAGGAGGTATTCAAGAACTTTTATCTCAC CAAACATAGCGTTCGCAAACTTGCATGGCAGCATGTAGATGGATCTTGCA CAGTGAGAGCACGTTTTCCAGAGGGAATCAAGATACTACAGCTCTCTTTG TATCAAACAATAGTAATGGTTCTCTTCAATGACGCTGACGAGATCTCATA CCTTGACATTGCTGAAGCAACCGGAATTGACGAACAGCCCTTGAAACGAA CCCTGCTTTCGCTTGCATGTGGAAGAGCTAGGGTGTTGCAGAAGAGGCCC AAAGGTCCTAGGGTTGTGTCTACCGATTCTTTTGAATTTAATAAGAAGTT CACCCATCGTCTGACAAAACTCAAGATTAATGCTATTCAAATGAAGGAAA CTGTAGAAGAAAATGCCGCTACAACAAAGAAGGTGTTCCAAGAAAGAAAC TATCAGATCGATGCTGCTGTTGTACGCATCATGAAGACAAGACGCACATT GCAACATACTGCTTTGCTTTCGGAAATTTACAATCAACTGCGATTTCCAC ATAAGCCTGGGGACGTGAAGAAGCGAATAGAATCACTCATTGAACGCGAG TACCTGGAACGAGATGAGAACAATCCGCAGACCTATCACTACTTGGCCTG A back to top
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