Gcaud8507.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8507.t1
Unique Name	Gcaud8507.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	252

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_679_length_19824_cov_4.222318	contig	NODE_679_length_19824_cov_4.222318:9004..9759 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	61459.XP_007783380.1
Max annot lvl	4751\|Fungi
Evalue	2.22e-53
EggNOG OGs	2AK91@1\|root,2RZ90@2759\|Eukaryota,39U20@33154\|Opisthokonta,3PATK@4751\|Fungi,3QT73@4890\|Ascomycota

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8507	Gcaud8507	Gracilaria caudata M_176_S67 male	gene	NODE_679_length_19824_cov_4.222318 9004..9759 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8507.t1.start1	Gcaud8507.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_679_length_19824_cov_4.222318 9004..9006 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8507.t1.CDS1	Gcaud8507.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_679_length_19824_cov_4.222318 9004..9759 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8507.t1.exon1	Gcaud8507.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_679_length_19824_cov_4.222318 9004..9759 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8507.t1.stop1	Gcaud8507.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_679_length_19824_cov_4.222318 9757..9759 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8507.t1	Gcaud8507.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_679_length_19824_cov_4.222318 9004..9759 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_679_length_19824_cov_4.222318:9004..9759+
coding sequence from alignment at NODE_679_length_19824_cov_4.222318:9004..9759+

mRNA sequence

>Gcaud8507.t1 ID=Gcaud8507.t1|Name=Gcaud8507.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=252bp
LGDSTLDNKYWLPWHNEAHPDALHARLLDQQLLKRDVSYWLNLLCGDFVT
FNCAVEASTLAQRRAKLLQNDRVVSESFGERDVLVVSLGGNDVALSPSLR
TIVSVLMQVYTESSIGFEHLVRLFGDSVREFIVRVLADRRPRLVVVCGLY
FPDETQAPSWASFVLRALQYNSQPHKLQRLIQAVFEAASSRVTIPGVRVV
TVPFYRSLNGRDTAHYVARVEPSEEGGYVMAELLRDVINTELDLLTNADQ
D*

spliced messenger RNA

>Gcaud8507.t1 ID=Gcaud8507.t1|Name=Gcaud8507.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=756bp|location=Sequence derived from alignment at NODE_679_length_19824_cov_4.222318:9004..9759+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGGGCGACAGCACGTTGGATAACAAGTACTGGTTACCGTGGCACAATGA
GGCGCACCCGGACGCGTTGCACGCGCGACTGTTGGACCAGCAGTTGCTCA
AGAGAGACGTGTCATACTGGCTTAACTTGCTGTGCGGCGACTTCGTGACG
TTCAATTGCGCGGTGGAGGCGTCGACGTTGGCGCAGAGACGCGCCAAGCT
GTTGCAGAATGACAGAGTGGTGAGCGAGAGCTTCGGCGAGCGCGATGTGC
TTGTGGTCAGCTTGGGCGGTAATGACGTTGCATTGTCTCCTTCTTTGCGC
ACGATCGTGTCGGTGTTGATGCAGGTGTACACCGAATCGTCGATTGGATT
TGAGCATTTGGTGCGCTTGTTCGGTGACTCGGTGCGCGAGTTTATTGTTC
GTGTGCTAGCCGATCGTCGTCCGCGGCTGGTGGTTGTGTGCGGGCTGTAT
TTTCCGGACGAGACGCAGGCGCCGTCGTGGGCATCGTTTGTGCTGCGCGC
GTTGCAGTACAACTCTCAGCCGCACAAGTTGCAGCGATTGATCCAAGCTG
TGTTCGAGGCCGCGTCTTCCAGGGTCACAATTCCGGGCGTTCGTGTGGTT
ACTGTGCCGTTTTATCGCTCGTTGAATGGCCGTGATACTGCCCATTATGT
CGCTCGTGTCGAACCTTCGGAAGAGGGAGGATATGTAATGGCTGAGTTGT
TACGCGATGTCATCAACACTGAACTTGATCTGCTGACCAACGCTGATCAG
GACTAG

protein sequence of Gcaud8507.t1

>Gcaud8507.t1 ID=Gcaud8507.t1|Name=Gcaud8507.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=252bp
LGDSTLDNKYWLPWHNEAHPDALHARLLDQQLLKRDVSYWLNLLCGDFVT
FNCAVEASTLAQRRAKLLQNDRVVSESFGERDVLVVSLGGNDVALSPSLR
TIVSVLMQVYTESSIGFEHLVRLFGDSVREFIVRVLADRRPRLVVVCGLY
FPDETQAPSWASFVLRALQYNSQPHKLQRLIQAVFEAASSRVTIPGVRVV
TVPFYRSLNGRDTAHYVARVEPSEEGGYVMAELLRDVINTELDLLTNADQ
D*

mRNA from alignment at NODE_679_length_19824_cov_4.222318:9004..9759+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8507.t1 ID=Gcaud8507.t1|Name=Gcaud8507.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=756bp|location=Sequence derived from alignment at NODE_679_length_19824_cov_4.222318:9004..9759+ (Gracilaria caudata M_176_S67 male)
CTGGGCGACAGCACGTTGGATAACAAGTACTGGTTACCGTGGCACAATGA
GGCGCACCCGGACGCGTTGCACGCGCGACTGTTGGACCAGCAGTTGCTCA
AGAGAGACGTGTCATACTGGCTTAACTTGCTGTGCGGCGACTTCGTGACG
TTCAATTGCGCGGTGGAGGCGTCGACGTTGGCGCAGAGACGCGCCAAGCT
GTTGCAGAATGACAGAGTGGTGAGCGAGAGCTTCGGCGAGCGCGATGTGC
TTGTGGTCAGCTTGGGCGGTAATGACGTTGCATTGTCTCCTTCTTTGCGC
ACGATCGTGTCGGTGTTGATGCAGGTGTACACCGAATCGTCGATTGGATT
TGAGCATTTGGTGCGCTTGTTCGGTGACTCGGTGCGCGAGTTTATTGTTC
GTGTGCTAGCCGATCGTCGTCCGCGGCTGGTGGTTGTGTGCGGGCTGTAT
TTTCCGGACGAGACGCAGGCGCCGTCGTGGGCATCGTTTGTGCTGCGCGC
GTTGCAGTACAACTCTCAGCCGCACAAGTTGCAGCGATTGATCCAAGCTG
TGTTCGAGGCCGCGTCTTCCAGGGTCACAATTCCGGGCGTTCGTGTGGTT
ACTGTGCCGTTTTATCGCTCGTTGAATGGCCGTGATACTGCCCATTATGT
CGCTCGTGTCGAACCTTCGGAAGAGGGAGGATATGTAATGGCTGAGTTGT
TACGCGATGTCATCAACACTGAACTTGATCTGCTGACCAACGCTGATCAG
GACTAG

Coding sequence (CDS) from alignment at NODE_679_length_19824_cov_4.222318:9004..9759+

>Gcaud8507.t1 ID=Gcaud8507.t1|Name=Gcaud8507.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=756bp|location=Sequence derived from alignment at NODE_679_length_19824_cov_4.222318:9004..9759+ (Gracilaria caudata M_176_S67 male)
CTGGGCGACAGCACGTTGGATAACAAGTACTGGTTACCGTGGCACAATGA
GGCGCACCCGGACGCGTTGCACGCGCGACTGTTGGACCAGCAGTTGCTCA
AGAGAGACGTGTCATACTGGCTTAACTTGCTGTGCGGCGACTTCGTGACG
TTCAATTGCGCGGTGGAGGCGTCGACGTTGGCGCAGAGACGCGCCAAGCT
GTTGCAGAATGACAGAGTGGTGAGCGAGAGCTTCGGCGAGCGCGATGTGC
TTGTGGTCAGCTTGGGCGGTAATGACGTTGCATTGTCTCCTTCTTTGCGC
ACGATCGTGTCGGTGTTGATGCAGGTGTACACCGAATCGTCGATTGGATT
TGAGCATTTGGTGCGCTTGTTCGGTGACTCGGTGCGCGAGTTTATTGTTC
GTGTGCTAGCCGATCGTCGTCCGCGGCTGGTGGTTGTGTGCGGGCTGTAT
TTTCCGGACGAGACGCAGGCGCCGTCGTGGGCATCGTTTGTGCTGCGCGC
GTTGCAGTACAACTCTCAGCCGCACAAGTTGCAGCGATTGATCCAAGCTG
TGTTCGAGGCCGCGTCTTCCAGGGTCACAATTCCGGGCGTTCGTGTGGTT
ACTGTGCCGTTTTATCGCTCGTTGAATGGCCGTGATACTGCCCATTATGT
CGCTCGTGTCGAACCTTCGGAAGAGGGAGGATATGTAATGGCTGAGTTGT
TACGCGATGTCATCAACACTGAACTTGATCTGCTGACCAACGCTGATCAG
GACTAG