Gcaud8505.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8505.t1
Unique NameGcaud8505.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length225
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_679_length_19824_cov_4.222318contigNODE_679_length_19824_cov_4.222318:4700..5374 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708171.1
PFAMsDUF3110
Max annot lvl2759|Eukaryota
Evalue2.28e-25
EggNOG OGs2C5ZQ@1|root,2SBKS@2759|Eukaryota
DescriptionProtein of unknown function (DUF3110)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8505Gcaud8505Gracilaria caudata M_176_S67 malegeneNODE_679_length_19824_cov_4.222318 4700..5374 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8505.t1.start1Gcaud8505.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_679_length_19824_cov_4.222318 4700..4702 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8505.t1.CDS1Gcaud8505.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_679_length_19824_cov_4.222318 4700..5374 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8505.t1.exon1Gcaud8505.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_679_length_19824_cov_4.222318 4700..5374 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8505.t1.stop1Gcaud8505.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_679_length_19824_cov_4.222318 5372..5374 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8505.t1Gcaud8505.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_679_length_19824_cov_4.222318 4700..5374 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8505.t1 ID=Gcaud8505.t1|Name=Gcaud8505.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=225bp
MSSSSSSDEDSTEDSFNPSSQPLNLDVLRRRIIDLDARQKAGHKPTDYVT
GSAKDSNGNTYEIRYKGRGPDLQGHNDDDDDTEVLQLINDFESLRKVWVI
VFTNARDSSEGIYSLSVADENIVLAFQDKEEAQRYALCLEQQQFPLPKVA
ELETNELTEFCSESGFRLGFVPKGSLITPPEQSAVEDLDKWRPPESSSSK
GNELGMTQDEIDTMRKKLDSLFGL*
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spliced messenger RNA

>Gcaud8505.t1 ID=Gcaud8505.t1|Name=Gcaud8505.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=675bp|location=Sequence derived from alignment at NODE_679_length_19824_cov_4.222318:4700..5374+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCATCGTCTTCGTCTTCGGATGAGGACTCCACGGAAGACTCTTTCAA
TCCATCGTCTCAACCGCTCAATCTCGATGTGCTGCGTCGTCGTATCATTG
ACTTGGACGCGCGACAGAAGGCTGGACATAAACCCACCGACTATGTCACT
GGTTCTGCGAAGGATTCGAATGGCAACACGTATGAGATTCGTTATAAAGG
GCGTGGTCCAGATCTGCAAGGGCACAACGACGACGACGATGATACGGAGG
TGCTGCAACTCATCAATGACTTTGAGAGCTTGCGCAAAGTGTGGGTGATT
GTGTTCACCAATGCGCGCGACTCGTCGGAGGGTATTTATAGTCTCAGTGT
GGCCGACGAGAACATTGTACTGGCGTTTCAGGATAAGGAGGAGGCGCAAC
GTTATGCATTGTGTTTGGAGCAACAGCAGTTTCCGCTGCCCAAGGTGGCG
GAGCTCGAAACAAATGAGCTCACCGAATTCTGTTCCGAGTCTGGGTTTCG
ACTGGGCTTCGTGCCGAAGGGCAGTTTGATCACCCCGCCGGAACAAAGCG
CCGTCGAAGACCTGGACAAGTGGCGGCCACCAGAGTCTTCCTCGTCGAAG
GGCAACGAGCTCGGCATGACTCAGGACGAGATTGACACCATGAGAAAGAA
ACTCGATTCGCTGTTTGGTCTCTAG
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protein sequence of Gcaud8505.t1

>Gcaud8505.t1 ID=Gcaud8505.t1|Name=Gcaud8505.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=225bp
MSSSSSSDEDSTEDSFNPSSQPLNLDVLRRRIIDLDARQKAGHKPTDYVT
GSAKDSNGNTYEIRYKGRGPDLQGHNDDDDDTEVLQLINDFESLRKVWVI
VFTNARDSSEGIYSLSVADENIVLAFQDKEEAQRYALCLEQQQFPLPKVA
ELETNELTEFCSESGFRLGFVPKGSLITPPEQSAVEDLDKWRPPESSSSK
GNELGMTQDEIDTMRKKLDSLFGL*
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mRNA from alignment at NODE_679_length_19824_cov_4.222318:4700..5374+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8505.t1 ID=Gcaud8505.t1|Name=Gcaud8505.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=675bp|location=Sequence derived from alignment at NODE_679_length_19824_cov_4.222318:4700..5374+ (Gracilaria caudata M_176_S67 male)
ATGTCATCGTCTTCGTCTTCGGATGAGGACTCCACGGAAGACTCTTTCAA
TCCATCGTCTCAACCGCTCAATCTCGATGTGCTGCGTCGTCGTATCATTG
ACTTGGACGCGCGACAGAAGGCTGGACATAAACCCACCGACTATGTCACT
GGTTCTGCGAAGGATTCGAATGGCAACACGTATGAGATTCGTTATAAAGG
GCGTGGTCCAGATCTGCAAGGGCACAACGACGACGACGATGATACGGAGG
TGCTGCAACTCATCAATGACTTTGAGAGCTTGCGCAAAGTGTGGGTGATT
GTGTTCACCAATGCGCGCGACTCGTCGGAGGGTATTTATAGTCTCAGTGT
GGCCGACGAGAACATTGTACTGGCGTTTCAGGATAAGGAGGAGGCGCAAC
GTTATGCATTGTGTTTGGAGCAACAGCAGTTTCCGCTGCCCAAGGTGGCG
GAGCTCGAAACAAATGAGCTCACCGAATTCTGTTCCGAGTCTGGGTTTCG
ACTGGGCTTCGTGCCGAAGGGCAGTTTGATCACCCCGCCGGAACAAAGCG
CCGTCGAAGACCTGGACAAGTGGCGGCCACCAGAGTCTTCCTCGTCGAAG
GGCAACGAGCTCGGCATGACTCAGGACGAGATTGACACCATGAGAAAGAA
ACTCGATTCGCTGTTTGGTCTCTAG
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Coding sequence (CDS) from alignment at NODE_679_length_19824_cov_4.222318:4700..5374+

>Gcaud8505.t1 ID=Gcaud8505.t1|Name=Gcaud8505.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=675bp|location=Sequence derived from alignment at NODE_679_length_19824_cov_4.222318:4700..5374+ (Gracilaria caudata M_176_S67 male)
ATGTCATCGTCTTCGTCTTCGGATGAGGACTCCACGGAAGACTCTTTCAA
TCCATCGTCTCAACCGCTCAATCTCGATGTGCTGCGTCGTCGTATCATTG
ACTTGGACGCGCGACAGAAGGCTGGACATAAACCCACCGACTATGTCACT
GGTTCTGCGAAGGATTCGAATGGCAACACGTATGAGATTCGTTATAAAGG
GCGTGGTCCAGATCTGCAAGGGCACAACGACGACGACGATGATACGGAGG
TGCTGCAACTCATCAATGACTTTGAGAGCTTGCGCAAAGTGTGGGTGATT
GTGTTCACCAATGCGCGCGACTCGTCGGAGGGTATTTATAGTCTCAGTGT
GGCCGACGAGAACATTGTACTGGCGTTTCAGGATAAGGAGGAGGCGCAAC
GTTATGCATTGTGTTTGGAGCAACAGCAGTTTCCGCTGCCCAAGGTGGCG
GAGCTCGAAACAAATGAGCTCACCGAATTCTGTTCCGAGTCTGGGTTTCG
ACTGGGCTTCGTGCCGAAGGGCAGTTTGATCACCCCGCCGGAACAAAGCG
CCGTCGAAGACCTGGACAAGTGGCGGCCACCAGAGTCTTCCTCGTCGAAG
GGCAACGAGCTCGGCATGACTCAGGACGAGATTGACACCATGAGAAAGAA
ACTCGATTCGCTGTTTGGTCTCTAG
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