Gcaud1424.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1424.t1
Unique Name	Gcaud1424.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	401

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_674_length_19871_cov_4.599949	contig	NODE_674_length_19871_cov_4.599949:167..1369 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708033.1
PFAMs	DUF4749,Metallophos
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00017,RC00425
KEGG ko	ko:K01128,ko:K12350
KEGG Reaction	R02541
KEGG Pathway	ko00600,ko01100,ko04071,ko04142,ko04217,map00600,map01100,map04071,map04142,map04217
GOs	GO:0003674,GO:0003824,GO:0004620,GO:0004767,GO:0006629,GO:0006643,GO:0006644,GO:0006665,GO:0006672,GO:0006684,GO:0006685,GO:0006793,GO:0006796,GO:0006807,GO:0007498,GO:0008081,GO:0008150,GO:0008152,GO:0008610,GO:0009056,GO:0009058,GO:0009395,GO:0009888,GO:0009987,GO:0016042,GO:0016298,GO:0016787,GO:0016788,GO:0019637,GO:0030148,GO:0030149,GO:0032502,GO:0034641,GO:0042578,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044249,GO:0044255,GO:0044271,GO:0046434,GO:0046466,GO:0046467,GO:0046513,GO:0048856,GO:0071704,GO:0097164,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576
Evalue	1.96e-29
EggNOG OGs	KOG3770@1\|root,KOG3770@2759\|Eukaryota
EC	3.1.4.12
Description	sphingomyelin catabolic process
COG category	P
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1424	Gcaud1424	Gracilaria caudata M_176_S67 male	gene	NODE_674_length_19871_cov_4.599949 167..1369 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1424.t1.start1	Gcaud1424.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_674_length_19871_cov_4.599949 167..169 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1424.t1.CDS1	Gcaud1424.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_674_length_19871_cov_4.599949 167..1369 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1424.t1.exon1	Gcaud1424.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_674_length_19871_cov_4.599949 167..1369 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1424.t1.stop1	Gcaud1424.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_674_length_19871_cov_4.599949 1367..1369 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1424.t1	Gcaud1424.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_674_length_19871_cov_4.599949 167..1369 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_674_length_19871_cov_4.599949:167..1369+
coding sequence from alignment at NODE_674_length_19871_cov_4.599949:167..1369+

mRNA sequence

>Gcaud1424.t1 ID=Gcaud1424.t1|Name=Gcaud1424.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=401bp
MVAPSFAFVRASVIHHSLHRTEPASLNRHRPLILRRPSTARRTAVPTLSA
ATPRRASRVRAFPLQSSSVPLSIGPLKTTVSARLLLCLVPLLTATFLACA
KLLYILPVALSPAQFNAARLVVASLFFLPALVREVPNIRSSPRATMRLLR
AGCELGALMFFANIMQLLGLRYTDASRAAFLQQMSTVLVPLAAAGLGIEK
LTPRVSAGAACALGGVALLTLTAAPAAAGATATLRALGDGMEIFSAVILT
VFMLRCSHHAKRTKKSGVLVAMKVCSQALLSLVWLGGKAITSNPNSANVA
SLAATASSASLAWTPMAVILNLLIVLWGGVLVSAVASWLQTKGQQAVPAS
EAAVLFAAQPLWASVVATLMLGERLTSLGMAGAGMIVSGAVISSTGKKSS
*

spliced messenger RNA

>Gcaud1424.t1 ID=Gcaud1424.t1|Name=Gcaud1424.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1203bp|location=Sequence derived from alignment at NODE_674_length_19871_cov_4.599949:167..1369+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGCGCCTTCGTTTGCGTTCGTCCGCGCCTCTGTGATACACCACTC
GCTTCATCGAACCGAGCCGGCTTCGCTCAACCGGCACCGGCCGCTCATCT
TGCGACGCCCATCCACTGCCCGTCGAACCGCAGTACCGACGCTCTCCGCC
GCCACCCCACGCCGTGCTTCTAGAGTGCGTGCATTTCCGCTACAATCCTC
CTCCGTTCCACTTTCAATCGGACCGCTCAAGACAACTGTATCTGCCCGCC
TTCTTCTCTGTCTCGTCCCCCTCCTCACGGCCACCTTCCTCGCCTGTGCA
AAGCTTCTTTACATTCTTCCGGTCGCTCTCTCCCCTGCGCAGTTCAATGC
CGCTCGTCTCGTCGTAGCCTCCTTGTTCTTCCTTCCAGCGCTTGTACGAG
AGGTTCCGAACATTCGATCGTCACCACGTGCCACCATGCGTCTTCTTCGT
GCGGGCTGCGAATTGGGCGCTCTCATGTTTTTCGCCAACATCATGCAGTT
GCTTGGATTGCGATATACAGATGCTTCTCGAGCTGCTTTCTTGCAACAAA
TGTCCACCGTGCTTGTTCCACTCGCCGCCGCAGGTCTAGGAATTGAAAAA
CTTACGCCCCGGGTGTCTGCCGGAGCCGCTTGCGCGCTCGGCGGCGTCGC
ACTTCTCACTCTCACCGCTGCACCCGCTGCAGCCGGCGCTACAGCCACTC
TTCGAGCACTCGGTGATGGTATGGAAATCTTTTCGGCCGTTATTCTTACC
GTGTTCATGTTACGATGCTCGCATCATGCAAAACGAACAAAGAAGAGCGG
TGTACTGGTGGCGATGAAGGTGTGTAGTCAGGCTTTGCTTTCTCTTGTAT
GGCTTGGGGGGAAGGCTATCACGAGCAACCCCAATTCCGCCAATGTGGCA
TCTTTGGCGGCTACAGCGTCGTCGGCGTCACTTGCATGGACGCCTATGGC
TGTCATTTTAAATTTGCTTATCGTTCTCTGGGGAGGTGTGCTGGTGAGTG
CAGTCGCATCTTGGTTGCAAACTAAGGGCCAACAGGCAGTCCCAGCATCT
GAGGCGGCAGTTTTGTTTGCGGCACAACCTTTGTGGGCTAGTGTTGTTGC
GACACTAATGCTAGGTGAACGGCTTACATCTCTTGGGATGGCTGGCGCTG
GTATGATTGTGTCTGGTGCTGTGATCTCAAGCACTGGAAAGAAGAGCAGT
TGA

protein sequence of Gcaud1424.t1

>Gcaud1424.t1 ID=Gcaud1424.t1|Name=Gcaud1424.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=401bp
MVAPSFAFVRASVIHHSLHRTEPASLNRHRPLILRRPSTARRTAVPTLSA
ATPRRASRVRAFPLQSSSVPLSIGPLKTTVSARLLLCLVPLLTATFLACA
KLLYILPVALSPAQFNAARLVVASLFFLPALVREVPNIRSSPRATMRLLR
AGCELGALMFFANIMQLLGLRYTDASRAAFLQQMSTVLVPLAAAGLGIEK
LTPRVSAGAACALGGVALLTLTAAPAAAGATATLRALGDGMEIFSAVILT
VFMLRCSHHAKRTKKSGVLVAMKVCSQALLSLVWLGGKAITSNPNSANVA
SLAATASSASLAWTPMAVILNLLIVLWGGVLVSAVASWLQTKGQQAVPAS
EAAVLFAAQPLWASVVATLMLGERLTSLGMAGAGMIVSGAVISSTGKKSS
*

mRNA from alignment at NODE_674_length_19871_cov_4.599949:167..1369+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1424.t1 ID=Gcaud1424.t1|Name=Gcaud1424.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1203bp|location=Sequence derived from alignment at NODE_674_length_19871_cov_4.599949:167..1369+ (Gracilaria caudata M_176_S67 male)
ATGGTTGCGCCTTCGTTTGCGTTCGTCCGCGCCTCTGTGATACACCACTC
GCTTCATCGAACCGAGCCGGCTTCGCTCAACCGGCACCGGCCGCTCATCT
TGCGACGCCCATCCACTGCCCGTCGAACCGCAGTACCGACGCTCTCCGCC
GCCACCCCACGCCGTGCTTCTAGAGTGCGTGCATTTCCGCTACAATCCTC
CTCCGTTCCACTTTCAATCGGACCGCTCAAGACAACTGTATCTGCCCGCC
TTCTTCTCTGTCTCGTCCCCCTCCTCACGGCCACCTTCCTCGCCTGTGCA
AAGCTTCTTTACATTCTTCCGGTCGCTCTCTCCCCTGCGCAGTTCAATGC
CGCTCGTCTCGTCGTAGCCTCCTTGTTCTTCCTTCCAGCGCTTGTACGAG
AGGTTCCGAACATTCGATCGTCACCACGTGCCACCATGCGTCTTCTTCGT
GCGGGCTGCGAATTGGGCGCTCTCATGTTTTTCGCCAACATCATGCAGTT
GCTTGGATTGCGATATACAGATGCTTCTCGAGCTGCTTTCTTGCAACAAA
TGTCCACCGTGCTTGTTCCACTCGCCGCCGCAGGTCTAGGAATTGAAAAA
CTTACGCCCCGGGTGTCTGCCGGAGCCGCTTGCGCGCTCGGCGGCGTCGC
ACTTCTCACTCTCACCGCTGCACCCGCTGCAGCCGGCGCTACAGCCACTC
TTCGAGCACTCGGTGATGGTATGGAAATCTTTTCGGCCGTTATTCTTACC
GTGTTCATGTTACGATGCTCGCATCATGCAAAACGAACAAAGAAGAGCGG
TGTACTGGTGGCGATGAAGGTGTGTAGTCAGGCTTTGCTTTCTCTTGTAT
GGCTTGGGGGGAAGGCTATCACGAGCAACCCCAATTCCGCCAATGTGGCA
TCTTTGGCGGCTACAGCGTCGTCGGCGTCACTTGCATGGACGCCTATGGC
TGTCATTTTAAATTTGCTTATCGTTCTCTGGGGAGGTGTGCTGGTGAGTG
CAGTCGCATCTTGGTTGCAAACTAAGGGCCAACAGGCAGTCCCAGCATCT
GAGGCGGCAGTTTTGTTTGCGGCACAACCTTTGTGGGCTAGTGTTGTTGC
GACACTAATGCTAGGTGAACGGCTTACATCTCTTGGGATGGCTGGCGCTG
GTATGATTGTGTCTGGTGCTGTGATCTCAAGCACTGGAAAGAAGAGCAGT
TGA

Coding sequence (CDS) from alignment at NODE_674_length_19871_cov_4.599949:167..1369+

>Gcaud1424.t1 ID=Gcaud1424.t1|Name=Gcaud1424.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1203bp|location=Sequence derived from alignment at NODE_674_length_19871_cov_4.599949:167..1369+ (Gracilaria caudata M_176_S67 male)
ATGGTTGCGCCTTCGTTTGCGTTCGTCCGCGCCTCTGTGATACACCACTC
GCTTCATCGAACCGAGCCGGCTTCGCTCAACCGGCACCGGCCGCTCATCT
TGCGACGCCCATCCACTGCCCGTCGAACCGCAGTACCGACGCTCTCCGCC
GCCACCCCACGCCGTGCTTCTAGAGTGCGTGCATTTCCGCTACAATCCTC
CTCCGTTCCACTTTCAATCGGACCGCTCAAGACAACTGTATCTGCCCGCC
TTCTTCTCTGTCTCGTCCCCCTCCTCACGGCCACCTTCCTCGCCTGTGCA
AAGCTTCTTTACATTCTTCCGGTCGCTCTCTCCCCTGCGCAGTTCAATGC
CGCTCGTCTCGTCGTAGCCTCCTTGTTCTTCCTTCCAGCGCTTGTACGAG
AGGTTCCGAACATTCGATCGTCACCACGTGCCACCATGCGTCTTCTTCGT
GCGGGCTGCGAATTGGGCGCTCTCATGTTTTTCGCCAACATCATGCAGTT
GCTTGGATTGCGATATACAGATGCTTCTCGAGCTGCTTTCTTGCAACAAA
TGTCCACCGTGCTTGTTCCACTCGCCGCCGCAGGTCTAGGAATTGAAAAA
CTTACGCCCCGGGTGTCTGCCGGAGCCGCTTGCGCGCTCGGCGGCGTCGC
ACTTCTCACTCTCACCGCTGCACCCGCTGCAGCCGGCGCTACAGCCACTC
TTCGAGCACTCGGTGATGGTATGGAAATCTTTTCGGCCGTTATTCTTACC
GTGTTCATGTTACGATGCTCGCATCATGCAAAACGAACAAAGAAGAGCGG
TGTACTGGTGGCGATGAAGGTGTGTAGTCAGGCTTTGCTTTCTCTTGTAT
GGCTTGGGGGGAAGGCTATCACGAGCAACCCCAATTCCGCCAATGTGGCA
TCTTTGGCGGCTACAGCGTCGTCGGCGTCACTTGCATGGACGCCTATGGC
TGTCATTTTAAATTTGCTTATCGTTCTCTGGGGAGGTGTGCTGGTGAGTG
CAGTCGCATCTTGGTTGCAAACTAAGGGCCAACAGGCAGTCCCAGCATCT
GAGGCGGCAGTTTTGTTTGCGGCACAACCTTTGTGGGCTAGTGTTGTTGC
GACACTAATGCTAGGTGAACGGCTTACATCTCTTGGGATGGCTGGCGCTG
GTATGATTGTGTCTGGTGCTGTGATCTCAAGCACTGGAAAGAAGAGCAGT
TGA