Gcaud1426.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1426.t1
Unique Name	Gcaud1426.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	490

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_674_length_19871_cov_4.599949	contig	NODE_674_length_19871_cov_4.599949:5651..7120 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMI148CT
PFAMs	FKBP_C,Trigger_C,Trigger_N
Max annot lvl	2759\|Eukaryota
Evalue	1.32e-92
EggNOG OGs	COG0544@1\|root,2QUET@2759\|Eukaryota
Description	peptidyl-prolyl cis-trans isomerase activity
COG category	O

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1426	Gcaud1426	Gracilaria caudata M_176_S67 male	gene	NODE_674_length_19871_cov_4.599949 5651..7120 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1426.t1.start1	Gcaud1426.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_674_length_19871_cov_4.599949 5651..5653 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1426.t1.CDS1	Gcaud1426.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_674_length_19871_cov_4.599949 5651..7120 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1426.t1.exon1	Gcaud1426.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_674_length_19871_cov_4.599949 5651..7120 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1426.t1.stop1	Gcaud1426.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_674_length_19871_cov_4.599949 7118..7120 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1426.t1	Gcaud1426.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_674_length_19871_cov_4.599949 5651..7120 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_674_length_19871_cov_4.599949:5651..7120+
coding sequence from alignment at NODE_674_length_19871_cov_4.599949:5651..7120+

mRNA sequence

>Gcaud1426.t1 ID=Gcaud1426.t1|Name=Gcaud1426.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=490bp
MNTPNFINSTPRVWLHRQGRRSAICPARKAQFAPAALRMGLSIKTAPLPK
SQVSLEISVGKEECSAAWDSVVKELSKKSKIQGFRKGTAPKQLVINQYGK
DNVRASACEEVIEKSIQKALKDSGIHAIGQAEVDGDGGVASVIANYDPQS
ALTFKVKIDVWPEATFISSYENLEIEAEESAFDESLVEKALEDLRQKEAF
SVLAPEGTKAELGKLLVADLVGYYRNEDGSKGEKLPEIADGNSVEINMTE
GKFMAGFVEGLIGADVGETREVNVEFPASNPRPELAGVKAIFSVTVHAIK
DVMLPELNDDFARQVSEEKTLEDFRKAIRDRLDTESETAQEKNINTAIDN
ELAELVQVDLPESLVENQAKNKFATMLASFNDKGMSDEQVKAMVTKENYE
MYKKRARGNVEKSLRVNFAVSRIAKDQSLEIDKKEVEDQMALVRAELKGQ
EMDEAKVRDQIEAQFERELVLAHIKKTAKISLVPKKGEE*

spliced messenger RNA

>Gcaud1426.t1 ID=Gcaud1426.t1|Name=Gcaud1426.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1470bp|location=Sequence derived from alignment at NODE_674_length_19871_cov_4.599949:5651..7120+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATACGCCCAATTTCATCAACAGCACCCCTAGGGTATGGCTACATCG
TCAGGGACGCCGGTCGGCCATTTGTCCCGCTCGCAAAGCGCAGTTCGCAC
CAGCGGCCTTGCGCATGGGACTCTCTATCAAGACAGCACCATTGCCGAAG
AGTCAGGTAAGCCTGGAGATTTCAGTAGGGAAGGAAGAGTGCAGCGCCGC
ATGGGATTCGGTCGTCAAAGAGCTTTCGAAGAAGTCCAAGATTCAGGGCT
TTCGCAAGGGAACCGCTCCGAAGCAACTCGTAATAAACCAGTATGGAAAG
GATAATGTCAGGGCCAGCGCTTGTGAGGAGGTGATCGAGAAATCTATTCA
GAAAGCTTTGAAGGACTCTGGTATTCACGCCATCGGCCAAGCAGAAGTAG
ATGGTGACGGTGGTGTTGCGTCTGTCATCGCTAATTATGATCCTCAGTCA
GCATTGACGTTTAAGGTTAAGATTGATGTCTGGCCGGAAGCTACTTTTAT
TTCTTCCTATGAGAATCTTGAAATTGAGGCTGAAGAATCAGCATTTGACG
AATCGCTGGTGGAAAAGGCGCTCGAGGATTTGAGACAGAAGGAAGCATTC
TCCGTTTTGGCACCGGAAGGAACGAAAGCAGAACTGGGCAAACTACTGGT
AGCAGATCTGGTGGGATATTATCGCAATGAAGACGGAAGCAAGGGAGAAA
AACTACCGGAAATTGCTGATGGAAACTCCGTCGAAATCAATATGACCGAA
GGGAAATTCATGGCCGGGTTTGTGGAGGGCTTGATTGGTGCCGACGTCGG
CGAAACACGGGAAGTGAATGTAGAATTCCCAGCGAGCAACCCGCGACCTG
AGTTGGCCGGTGTGAAAGCGATTTTCTCTGTGACAGTGCATGCAATCAAA
GATGTAATGCTTCCTGAGCTGAACGATGACTTTGCTCGACAAGTGAGTGA
AGAGAAAACCCTTGAAGATTTCCGCAAGGCGATTCGGGATCGGCTTGATA
CTGAATCTGAGACGGCTCAGGAAAAGAACATTAATACTGCGATTGACAAT
GAGCTTGCTGAACTGGTTCAAGTGGATCTTCCTGAGTCGCTGGTCGAAAA
CCAGGCGAAGAACAAGTTTGCCACGATGCTGGCCTCTTTCAACGACAAGG
GTATGTCTGATGAGCAAGTGAAAGCCATGGTGACGAAAGAAAACTACGAA
ATGTACAAGAAGCGAGCGCGAGGAAATGTGGAGAAATCTTTACGCGTGAA
CTTTGCTGTATCGCGCATCGCCAAAGACCAAAGCTTAGAAATCGACAAGA
AAGAAGTGGAAGATCAGATGGCATTAGTTCGAGCCGAATTGAAAGGGCAG
GAAATGGACGAGGCCAAGGTTCGTGATCAGATTGAGGCGCAGTTTGAGCG
AGAGCTGGTTTTGGCTCACATCAAGAAGACTGCTAAGATATCTCTCGTGC
CAAAGAAAGGCGAGGAATAG

protein sequence of Gcaud1426.t1

>Gcaud1426.t1 ID=Gcaud1426.t1|Name=Gcaud1426.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=490bp
MNTPNFINSTPRVWLHRQGRRSAICPARKAQFAPAALRMGLSIKTAPLPK
SQVSLEISVGKEECSAAWDSVVKELSKKSKIQGFRKGTAPKQLVINQYGK
DNVRASACEEVIEKSIQKALKDSGIHAIGQAEVDGDGGVASVIANYDPQS
ALTFKVKIDVWPEATFISSYENLEIEAEESAFDESLVEKALEDLRQKEAF
SVLAPEGTKAELGKLLVADLVGYYRNEDGSKGEKLPEIADGNSVEINMTE
GKFMAGFVEGLIGADVGETREVNVEFPASNPRPELAGVKAIFSVTVHAIK
DVMLPELNDDFARQVSEEKTLEDFRKAIRDRLDTESETAQEKNINTAIDN
ELAELVQVDLPESLVENQAKNKFATMLASFNDKGMSDEQVKAMVTKENYE
MYKKRARGNVEKSLRVNFAVSRIAKDQSLEIDKKEVEDQMALVRAELKGQ
EMDEAKVRDQIEAQFERELVLAHIKKTAKISLVPKKGEE*

mRNA from alignment at NODE_674_length_19871_cov_4.599949:5651..7120+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1426.t1 ID=Gcaud1426.t1|Name=Gcaud1426.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1470bp|location=Sequence derived from alignment at NODE_674_length_19871_cov_4.599949:5651..7120+ (Gracilaria caudata M_176_S67 male)
ATGAATACGCCCAATTTCATCAACAGCACCCCTAGGGTATGGCTACATCG
TCAGGGACGCCGGTCGGCCATTTGTCCCGCTCGCAAAGCGCAGTTCGCAC
CAGCGGCCTTGCGCATGGGACTCTCTATCAAGACAGCACCATTGCCGAAG
AGTCAGGTAAGCCTGGAGATTTCAGTAGGGAAGGAAGAGTGCAGCGCCGC
ATGGGATTCGGTCGTCAAAGAGCTTTCGAAGAAGTCCAAGATTCAGGGCT
TTCGCAAGGGAACCGCTCCGAAGCAACTCGTAATAAACCAGTATGGAAAG
GATAATGTCAGGGCCAGCGCTTGTGAGGAGGTGATCGAGAAATCTATTCA
GAAAGCTTTGAAGGACTCTGGTATTCACGCCATCGGCCAAGCAGAAGTAG
ATGGTGACGGTGGTGTTGCGTCTGTCATCGCTAATTATGATCCTCAGTCA
GCATTGACGTTTAAGGTTAAGATTGATGTCTGGCCGGAAGCTACTTTTAT
TTCTTCCTATGAGAATCTTGAAATTGAGGCTGAAGAATCAGCATTTGACG
AATCGCTGGTGGAAAAGGCGCTCGAGGATTTGAGACAGAAGGAAGCATTC
TCCGTTTTGGCACCGGAAGGAACGAAAGCAGAACTGGGCAAACTACTGGT
AGCAGATCTGGTGGGATATTATCGCAATGAAGACGGAAGCAAGGGAGAAA
AACTACCGGAAATTGCTGATGGAAACTCCGTCGAAATCAATATGACCGAA
GGGAAATTCATGGCCGGGTTTGTGGAGGGCTTGATTGGTGCCGACGTCGG
CGAAACACGGGAAGTGAATGTAGAATTCCCAGCGAGCAACCCGCGACCTG
AGTTGGCCGGTGTGAAAGCGATTTTCTCTGTGACAGTGCATGCAATCAAA
GATGTAATGCTTCCTGAGCTGAACGATGACTTTGCTCGACAAGTGAGTGA
AGAGAAAACCCTTGAAGATTTCCGCAAGGCGATTCGGGATCGGCTTGATA
CTGAATCTGAGACGGCTCAGGAAAAGAACATTAATACTGCGATTGACAAT
GAGCTTGCTGAACTGGTTCAAGTGGATCTTCCTGAGTCGCTGGTCGAAAA
CCAGGCGAAGAACAAGTTTGCCACGATGCTGGCCTCTTTCAACGACAAGG
GTATGTCTGATGAGCAAGTGAAAGCCATGGTGACGAAAGAAAACTACGAA
ATGTACAAGAAGCGAGCGCGAGGAAATGTGGAGAAATCTTTACGCGTGAA
CTTTGCTGTATCGCGCATCGCCAAAGACCAAAGCTTAGAAATCGACAAGA
AAGAAGTGGAAGATCAGATGGCATTAGTTCGAGCCGAATTGAAAGGGCAG
GAAATGGACGAGGCCAAGGTTCGTGATCAGATTGAGGCGCAGTTTGAGCG
AGAGCTGGTTTTGGCTCACATCAAGAAGACTGCTAAGATATCTCTCGTGC
CAAAGAAAGGCGAGGAATAG

Coding sequence (CDS) from alignment at NODE_674_length_19871_cov_4.599949:5651..7120+

>Gcaud1426.t1 ID=Gcaud1426.t1|Name=Gcaud1426.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1470bp|location=Sequence derived from alignment at NODE_674_length_19871_cov_4.599949:5651..7120+ (Gracilaria caudata M_176_S67 male)
ATGAATACGCCCAATTTCATCAACAGCACCCCTAGGGTATGGCTACATCG
TCAGGGACGCCGGTCGGCCATTTGTCCCGCTCGCAAAGCGCAGTTCGCAC
CAGCGGCCTTGCGCATGGGACTCTCTATCAAGACAGCACCATTGCCGAAG
AGTCAGGTAAGCCTGGAGATTTCAGTAGGGAAGGAAGAGTGCAGCGCCGC
ATGGGATTCGGTCGTCAAAGAGCTTTCGAAGAAGTCCAAGATTCAGGGCT
TTCGCAAGGGAACCGCTCCGAAGCAACTCGTAATAAACCAGTATGGAAAG
GATAATGTCAGGGCCAGCGCTTGTGAGGAGGTGATCGAGAAATCTATTCA
GAAAGCTTTGAAGGACTCTGGTATTCACGCCATCGGCCAAGCAGAAGTAG
ATGGTGACGGTGGTGTTGCGTCTGTCATCGCTAATTATGATCCTCAGTCA
GCATTGACGTTTAAGGTTAAGATTGATGTCTGGCCGGAAGCTACTTTTAT
TTCTTCCTATGAGAATCTTGAAATTGAGGCTGAAGAATCAGCATTTGACG
AATCGCTGGTGGAAAAGGCGCTCGAGGATTTGAGACAGAAGGAAGCATTC
TCCGTTTTGGCACCGGAAGGAACGAAAGCAGAACTGGGCAAACTACTGGT
AGCAGATCTGGTGGGATATTATCGCAATGAAGACGGAAGCAAGGGAGAAA
AACTACCGGAAATTGCTGATGGAAACTCCGTCGAAATCAATATGACCGAA
GGGAAATTCATGGCCGGGTTTGTGGAGGGCTTGATTGGTGCCGACGTCGG
CGAAACACGGGAAGTGAATGTAGAATTCCCAGCGAGCAACCCGCGACCTG
AGTTGGCCGGTGTGAAAGCGATTTTCTCTGTGACAGTGCATGCAATCAAA
GATGTAATGCTTCCTGAGCTGAACGATGACTTTGCTCGACAAGTGAGTGA
AGAGAAAACCCTTGAAGATTTCCGCAAGGCGATTCGGGATCGGCTTGATA
CTGAATCTGAGACGGCTCAGGAAAAGAACATTAATACTGCGATTGACAAT
GAGCTTGCTGAACTGGTTCAAGTGGATCTTCCTGAGTCGCTGGTCGAAAA
CCAGGCGAAGAACAAGTTTGCCACGATGCTGGCCTCTTTCAACGACAAGG
GTATGTCTGATGAGCAAGTGAAAGCCATGGTGACGAAAGAAAACTACGAA
ATGTACAAGAAGCGAGCGCGAGGAAATGTGGAGAAATCTTTACGCGTGAA
CTTTGCTGTATCGCGCATCGCCAAAGACCAAAGCTTAGAAATCGACAAGA
AAGAAGTGGAAGATCAGATGGCATTAGTTCGAGCCGAATTGAAAGGGCAG
GAAATGGACGAGGCCAAGGTTCGTGATCAGATTGAGGCGCAGTTTGAGCG
AGAGCTGGTTTTGGCTCACATCAAGAAGACTGCTAAGATATCTCTCGTGC
CAAAGAAAGGCGAGGAATAG