Gcaud3143.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3143.t1
Unique NameGcaud3143.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length139
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_65_length_57458_cov_4.409765contigNODE_65_length_57458_cov_4.409765:6380..6796 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3143Gcaud3143Gracilaria caudata M_176_S67 malegeneNODE_65_length_57458_cov_4.409765 6380..6796 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3143.t1.stop1Gcaud3143.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_65_length_57458_cov_4.409765 6380..6382 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3143.t1.CDS1Gcaud3143.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_65_length_57458_cov_4.409765 6380..6796 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3143.t1.exon1Gcaud3143.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_65_length_57458_cov_4.409765 6380..6796 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3143.t1.start1Gcaud3143.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_65_length_57458_cov_4.409765 6794..6796 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3143.t1Gcaud3143.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_65_length_57458_cov_4.409765 6380..6796 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3143.t1 ID=Gcaud3143.t1|Name=Gcaud3143.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=139bp
MTSTDLKLHRGLQTTPMPFLPHQISGGLVLPIEANMDEFDNSLNPIQRSA
HSAHPPTHKDKVGPMATDEIAPLEKESYSNNATPAATPSKPPSTNQTYDY
KTIKTLLVKMKEAGYGDNKKQKKSLKEVFATAILLAQS*
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spliced messenger RNA

>Gcaud3143.t1 ID=Gcaud3143.t1|Name=Gcaud3143.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=417bp|location=Sequence derived from alignment at NODE_65_length_57458_cov_4.409765:6380..6796- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTTCTACTGATCTAAAGCTACATCGTGGACTACAAACCACACCAAT
GCCTTTCCTTCCACACCAGATTTCCGGCGGTCTTGTGCTCCCAATCGAAG
CCAATATGGATGAATTCGACAATTCATTAAACCCCATACAACGTTCCGCA
CATTCCGCACACCCACCAACGCATAAGGACAAAGTAGGCCCCATGGCAAC
AGACGAAATAGCACCTCTTGAGAAAGAAAGTTATTCGAACAACGCAACGC
CTGCTGCTACTCCATCCAAGCCCCCTTCAACCAATCAGACGTATGACTAT
AAGACAATTAAAACGCTCCTTGTCAAAATGAAGGAGGCAGGGTACGGTGA
CAATAAGAAGCAAAAGAAATCTCTGAAAGAAGTTTTTGCAACCGCTATTC
TCTTGGCGCAATCGTAA
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protein sequence of Gcaud3143.t1

>Gcaud3143.t1 ID=Gcaud3143.t1|Name=Gcaud3143.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=139bp
MTSTDLKLHRGLQTTPMPFLPHQISGGLVLPIEANMDEFDNSLNPIQRSA
HSAHPPTHKDKVGPMATDEIAPLEKESYSNNATPAATPSKPPSTNQTYDY
KTIKTLLVKMKEAGYGDNKKQKKSLKEVFATAILLAQS*
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mRNA from alignment at NODE_65_length_57458_cov_4.409765:6380..6796-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3143.t1 ID=Gcaud3143.t1|Name=Gcaud3143.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=417bp|location=Sequence derived from alignment at NODE_65_length_57458_cov_4.409765:6380..6796- (Gracilaria caudata M_176_S67 male)
ATGACTTCTACTGATCTAAAGCTACATCGTGGACTACAAACCACACCAAT
GCCTTTCCTTCCACACCAGATTTCCGGCGGTCTTGTGCTCCCAATCGAAG
CCAATATGGATGAATTCGACAATTCATTAAACCCCATACAACGTTCCGCA
CATTCCGCACACCCACCAACGCATAAGGACAAAGTAGGCCCCATGGCAAC
AGACGAAATAGCACCTCTTGAGAAAGAAAGTTATTCGAACAACGCAACGC
CTGCTGCTACTCCATCCAAGCCCCCTTCAACCAATCAGACGTATGACTAT
AAGACAATTAAAACGCTCCTTGTCAAAATGAAGGAGGCAGGGTACGGTGA
CAATAAGAAGCAAAAGAAATCTCTGAAAGAAGTTTTTGCAACCGCTATTC
TCTTGGCGCAATCGTAA
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Coding sequence (CDS) from alignment at NODE_65_length_57458_cov_4.409765:6380..6796-

>Gcaud3143.t1 ID=Gcaud3143.t1|Name=Gcaud3143.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=417bp|location=Sequence derived from alignment at NODE_65_length_57458_cov_4.409765:6380..6796- (Gracilaria caudata M_176_S67 male)
ATGACTTCTACTGATCTAAAGCTACATCGTGGACTACAAACCACACCAAT
GCCTTTCCTTCCACACCAGATTTCCGGCGGTCTTGTGCTCCCAATCGAAG
CCAATATGGATGAATTCGACAATTCATTAAACCCCATACAACGTTCCGCA
CATTCCGCACACCCACCAACGCATAAGGACAAAGTAGGCCCCATGGCAAC
AGACGAAATAGCACCTCTTGAGAAAGAAAGTTATTCGAACAACGCAACGC
CTGCTGCTACTCCATCCAAGCCCCCTTCAACCAATCAGACGTATGACTAT
AAGACAATTAAAACGCTCCTTGTCAAAATGAAGGAGGCAGGGTACGGTGA
CAATAAGAAGCAAAAGAAATCTCTGAAAGAAGTTTTTGCAACCGCTATTC
TCTTGGCGCAATCGTAA
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