Gcaud2130.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2130.t1
Unique Name	Gcaud2130.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	194

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_116_length_48691_cov_4.274671	contig	NODE_116_length_48691_cov_4.274671:4845..5426 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	7222.FBpp0144726
Preferred name	CIAPIN1
PFAMs	CIAPIN1,Methyltransf_11
Max annot lvl	33208\|Metazoa
GOs	GO:0000003,GO:0002064,GO:0002065,GO:0002066,GO:0002376,GO:0002520,GO:0003006,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005739,GO:0006790,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0008150,GO:0008152,GO:0009888,GO:0009987,GO:0010941,GO:0016043,GO:0016226,GO:0019953,GO:0022412,GO:0022414,GO:0022607,GO:0030097,GO:0030154,GO:0030707,GO:0030855,GO:0031163,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0048037,GO:0048468,GO:0048477,GO:0048513,GO:0048519,GO:0048523,GO:0048534,GO:0048609,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051186,GO:0051536,GO:0051537,GO:0051540,GO:0051704,GO:0060429,GO:0060548,GO:0065007,GO:0070013,GO:0071840
Evalue	2.59e-34
EggNOG OGs	COG5636@1\|root,KOG4020@2759\|Eukaryota,38G05@33154\|Opisthokonta,3BJ52@33208\|Metazoa,3D1VD@33213\|Bilateria,41Z5N@6656\|Arthropoda,3SMI8@50557\|Insecta,4524N@7147\|Diptera,45SD8@7214\|Drosophilidae
Description	Component of the cytosolic iron-sulfur (Fe-S) protein assembly (CIA) machinery. Required for the maturation of extramitochondrial Fe-S proteins. Part of an electron transfer chain functioning in an early step of cytosolic Fe-S biogenesis. Electrons are transferred to the Fe-S cluster from NADPH via a FAD- and FMN-containing diflavin oxidoreductase. Has anti- apoptotic effects in the cell
COG category	C

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2130	Gcaud2130	Gracilaria caudata M_176_S67 male	gene	NODE_116_length_48691_cov_4.274671 4845..5426 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2130.t1.start1	Gcaud2130.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_116_length_48691_cov_4.274671 4845..4847 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2130.t1.CDS1	Gcaud2130.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_116_length_48691_cov_4.274671 4845..5426 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2130.t1.exon1	Gcaud2130.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_116_length_48691_cov_4.274671 4845..5426 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2130.t1.stop1	Gcaud2130.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_116_length_48691_cov_4.274671 5424..5426 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2130.t1	Gcaud2130.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_116_length_48691_cov_4.274671 4845..5426 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_116_length_48691_cov_4.274671:4845..5426+
coding sequence from alignment at NODE_116_length_48691_cov_4.274671:4845..5426+

mRNA sequence

>Gcaud2130.t1 ID=Gcaud2130.t1|Name=Gcaud2130.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=194bp
MVTNLTEVDQDSLVSFVSSAAPGTQVSVQVPTSDNAVDVEVRLTLAGFIN
IKESSPSTFTARLPAYMQGTSVALSEKPKAANSNAWAAALSSNEQVPLVD
ENELLKRDGIPDGDGKGCAVDSTGKRKPCKDCSCGLADVYEEQQQSDTAP
KSSCGNCSLGDAFRCASCPYLGLPPFKPGEKVAIPSSFMTSDI*

spliced messenger RNA

>Gcaud2130.t1 ID=Gcaud2130.t1|Name=Gcaud2130.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=582bp|location=Sequence derived from alignment at NODE_116_length_48691_cov_4.274671:4845..5426+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCACGAATCTGACAGAAGTAGATCAGGACTCCTTGGTGTCTTTTGT
TTCCTCCGCTGCACCAGGAACGCAGGTGTCTGTGCAGGTTCCCACTTCCG
ACAATGCGGTTGACGTAGAGGTGCGTCTGACGTTAGCCGGATTTATCAAC
ATCAAAGAGTCTTCACCATCCACATTCACAGCTCGCCTTCCCGCATATAT
GCAAGGCACGTCAGTTGCCCTGTCCGAAAAACCGAAAGCAGCCAACTCCA
ACGCCTGGGCTGCCGCGCTTTCCTCAAACGAACAAGTCCCACTAGTGGAC
GAAAACGAACTGCTAAAGCGCGACGGTATTCCAGACGGAGATGGAAAAGG
CTGCGCCGTCGATAGCACTGGAAAGCGAAAACCATGCAAAGATTGTTCTT
GTGGACTCGCGGATGTGTACGAGGAACAACAACAGTCTGATACTGCCCCG
AAGAGTTCGTGTGGTAACTGTTCACTAGGAGATGCATTCCGATGTGCAAG
CTGTCCCTATCTAGGACTACCGCCATTCAAACCTGGGGAAAAGGTGGCAA
TTCCGTCGTCCTTTATGACTTCTGATATTTGA

protein sequence of Gcaud2130.t1

>Gcaud2130.t1 ID=Gcaud2130.t1|Name=Gcaud2130.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=194bp
MVTNLTEVDQDSLVSFVSSAAPGTQVSVQVPTSDNAVDVEVRLTLAGFIN
IKESSPSTFTARLPAYMQGTSVALSEKPKAANSNAWAAALSSNEQVPLVD
ENELLKRDGIPDGDGKGCAVDSTGKRKPCKDCSCGLADVYEEQQQSDTAP
KSSCGNCSLGDAFRCASCPYLGLPPFKPGEKVAIPSSFMTSDI*

mRNA from alignment at NODE_116_length_48691_cov_4.274671:4845..5426+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2130.t1 ID=Gcaud2130.t1|Name=Gcaud2130.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=582bp|location=Sequence derived from alignment at NODE_116_length_48691_cov_4.274671:4845..5426+ (Gracilaria caudata M_176_S67 male)
ATGGTCACGAATCTGACAGAAGTAGATCAGGACTCCTTGGTGTCTTTTGT
TTCCTCCGCTGCACCAGGAACGCAGGTGTCTGTGCAGGTTCCCACTTCCG
ACAATGCGGTTGACGTAGAGGTGCGTCTGACGTTAGCCGGATTTATCAAC
ATCAAAGAGTCTTCACCATCCACATTCACAGCTCGCCTTCCCGCATATAT
GCAAGGCACGTCAGTTGCCCTGTCCGAAAAACCGAAAGCAGCCAACTCCA
ACGCCTGGGCTGCCGCGCTTTCCTCAAACGAACAAGTCCCACTAGTGGAC
GAAAACGAACTGCTAAAGCGCGACGGTATTCCAGACGGAGATGGAAAAGG
CTGCGCCGTCGATAGCACTGGAAAGCGAAAACCATGCAAAGATTGTTCTT
GTGGACTCGCGGATGTGTACGAGGAACAACAACAGTCTGATACTGCCCCG
AAGAGTTCGTGTGGTAACTGTTCACTAGGAGATGCATTCCGATGTGCAAG
CTGTCCCTATCTAGGACTACCGCCATTCAAACCTGGGGAAAAGGTGGCAA
TTCCGTCGTCCTTTATGACTTCTGATATTTGA

Coding sequence (CDS) from alignment at NODE_116_length_48691_cov_4.274671:4845..5426+

>Gcaud2130.t1 ID=Gcaud2130.t1|Name=Gcaud2130.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=582bp|location=Sequence derived from alignment at NODE_116_length_48691_cov_4.274671:4845..5426+ (Gracilaria caudata M_176_S67 male)
ATGGTCACGAATCTGACAGAAGTAGATCAGGACTCCTTGGTGTCTTTTGT
TTCCTCCGCTGCACCAGGAACGCAGGTGTCTGTGCAGGTTCCCACTTCCG
ACAATGCGGTTGACGTAGAGGTGCGTCTGACGTTAGCCGGATTTATCAAC
ATCAAAGAGTCTTCACCATCCACATTCACAGCTCGCCTTCCCGCATATAT
GCAAGGCACGTCAGTTGCCCTGTCCGAAAAACCGAAAGCAGCCAACTCCA
ACGCCTGGGCTGCCGCGCTTTCCTCAAACGAACAAGTCCCACTAGTGGAC
GAAAACGAACTGCTAAAGCGCGACGGTATTCCAGACGGAGATGGAAAAGG
CTGCGCCGTCGATAGCACTGGAAAGCGAAAACCATGCAAAGATTGTTCTT
GTGGACTCGCGGATGTGTACGAGGAACAACAACAGTCTGATACTGCCCCG
AAGAGTTCGTGTGGTAACTGTTCACTAGGAGATGCATTCCGATGTGCAAG
CTGTCCCTATCTAGGACTACCGCCATTCAAACCTGGGGAAAAGGTGGCAA
TTCCGTCGTCCTTTATGACTTCTGATATTTGA