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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 109760.SPPG_00835T1 |
| Preferred name | PPP4R4 |
| PFAMs | HEAT |
| Max annot lvl | 33154|Opisthokonta |
| KEGG ko | ko:K15426 |
| GOs | GO:0003674,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0008287,GO:0009892,GO:0010563,GO:0010605,GO:0010921,GO:0010923,GO:0019208,GO:0019220,GO:0019222,GO:0019888,GO:0030234,GO:0031323,GO:0031324,GO:0031399,GO:0031400,GO:0032268,GO:0032269,GO:0032515,GO:0032991,GO:0035303,GO:0035304,GO:0035305,GO:0035308,GO:0043086,GO:0043666,GO:0044092,GO:0044424,GO:0044444,GO:0044464,GO:0045936,GO:0048519,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051172,GO:0051174,GO:0051246,GO:0051248,GO:0051336,GO:0051346,GO:0060255,GO:0065007,GO:0065009,GO:0080090,GO:0080163,GO:0098772,GO:1902494,GO:1903293 |
| Evalue | 1.49e-19 |
| EggNOG OGs | KOG0211@1|root,KOG0211@2759|Eukaryota,38QVM@33154|Opisthokonta |
| Description | regulation of protein serine/threonine phosphatase activity |
| COG category | T |
| BRITE | ko00000,ko01009,ko03400 |
Relationships
This mRNA is a part of the following gene feature(s):
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud2990.t2.stop1 | Gcaud2990.t2.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_641_length_20422_cov_4.560720 17732..17734 - |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud2990.t2.exon1 | Gcaud2990.t2.exon1 | Gracilaria caudata M_176_S67 male | exon | NODE_641_length_20422_cov_4.560720 17732..20188 - |
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud2990.t2.start1 | Gcaud2990.t2.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_641_length_20422_cov_4.560720 20186..20188 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud2990.t2 ID=Gcaud2990.t2|Name=Gcaud2990.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=819bp MATCNGPLIRRNCAFNLPGVAKALGDKYALELSGLCDYLAKDTDEEVRFI LAAGIHETTALLAPRGNFERLFTAVCSLLQDENAMVRMNALAHFHDLLTA FARDGSDPASVRRLAPVFSDLTVLSEGEWRIQKSLAEQLAKCAEIIPADA LMDHVLPLLYRLTSQGTPLVREAAMDATIKSIRNIPNTKDRNSAIDKYWK AATRGPFWMRLALLDGGTSAMKVFSHRRFQELFSGHMLSLAIDPVVNVRI RLANLLPSMAPMCGGSAAYEKAISILKNDTDVDVLALLQKHPDRVSEFMR QAIERRAEDQARYREEQEFYGFSPRTQKRARGRLGSTRGNRRIMHVRRPS LEQSSGQLSVSKAVISAAKASSAAASMMKPSAYHNQKLSEVDSAVYLDPM ADTSVDGSYPNAVTEDLGGNSKGEESILSSIVNESLQPSTSVEMPNSIRP NGLHPHVSALFEQQQRLQSQQSTQTKQQSGVKGDAPKIINNGVPVKEQSM GKSAAQNARYEARSRSWNGMFAQLPRQLSMESRSRRNGRTEGKEKSHKMT GWGKHGQDTPKKTLSAFRRKKKSYTASAAAAQNVTPLEGHTGGAGVPIVT AGEFGLNGPQVVSARSNSISVPPSGNTDDELLSAHEDVTDFASTSSLPTT ERTINGGMASDENHTGFANHHLLASNHEVHGSKFANGHVNGSLEEGNTLP VIFEKDSGLTPLKGGAAWRRSRGRHEDLDTMSDATHRKVYGPYDGRYRSD ESGQNPSRSVLSSFHNSASKVFTTKPNGNTPTGPPLTPNVTAVRATKNSS SSGSSHVGFFRGLFRRRR* back to topspliced messenger RNA >Gcaud2990.t2 ID=Gcaud2990.t2|Name=Gcaud2990.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2457bp|location=Sequence derived from alignment at NODE_641_length_20422_cov_4.560720:17732..20188- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGGCAACTTGCAACGGGCCACTCATTCGACGTAACTGTGCATTCAACCT TCCAGGAGTTGCAAAGGCGTTGGGAGACAAGTATGCCTTAGAGTTGAGCG GTCTGTGCGACTATCTAGCCAAGGATACGGATGAGGAGGTCCGATTCATT CTGGCAGCCGGTATCCACGAGACTACAGCTTTGCTGGCACCGCGCGGTAA TTTCGAACGTCTGTTCACCGCTGTATGTTCTTTGCTCCAGGACGAAAACG CTATGGTACGTATGAATGCCTTGGCTCATTTTCACGACTTACTTACCGCC TTTGCGCGTGATGGAAGTGACCCTGCTTCAGTTAGAAGGCTGGCTCCGGT CTTCTCTGACCTCACGGTGCTGTCGGAAGGGGAGTGGAGAATACAAAAGA GTCTTGCTGAGCAGCTCGCGAAGTGCGCCGAGATTATTCCTGCAGACGCT CTGATGGACCATGTACTGCCGTTGTTATATCGCCTCACCAGTCAGGGGAC TCCGCTCGTGCGCGAAGCCGCTATGGATGCCACTATTAAGTCTATTCGTA ATATTCCCAACACAAAAGACCGCAACAGTGCCATCGATAAGTACTGGAAG GCAGCCACAAGAGGTCCATTCTGGATGCGACTCGCCTTGCTTGATGGAGG CACATCTGCTATGAAAGTGTTCAGTCATCGACGCTTTCAGGAGCTGTTTT CTGGCCATATGCTCTCATTGGCCATTGACCCGGTCGTCAACGTGCGTATT AGGCTTGCCAATTTGCTTCCATCTATGGCCCCCATGTGTGGTGGGTCTGC TGCATACGAGAAGGCTATTAGTATACTGAAGAATGATACAGATGTCGATG TGCTTGCTCTTCTGCAAAAGCACCCCGATCGGGTAAGCGAGTTTATGCGA CAGGCGATTGAGCGAAGGGCTGAGGATCAAGCCCGATACCGCGAGGAACA GGAGTTCTATGGATTTTCTCCTAGAACTCAGAAGCGCGCTAGAGGAAGGC TGGGTTCAACCCGTGGGAATCGGCGGATAATGCATGTAAGACGTCCAAGT CTCGAACAGTCATCTGGGCAGCTGTCTGTCTCCAAAGCCGTCATATCCGC AGCAAAGGCCAGTTCTGCTGCAGCTTCCATGATGAAACCAAGTGCCTATC ACAACCAAAAGTTGTCAGAAGTTGACTCTGCAGTGTATCTTGATCCTATG GCTGACACAAGTGTCGATGGCAGCTACCCCAACGCTGTTACAGAAGACCT TGGTGGCAATTCGAAAGGAGAGGAAAGCATTTTGAGCAGTATTGTGAATG AATCTCTTCAACCATCTACGTCAGTTGAAATGCCCAATAGCATCCGTCCT AATGGGCTCCACCCTCACGTGTCTGCCCTTTTTGAGCAGCAACAAAGATT ACAATCACAACAATCCACGCAAACAAAACAGCAGAGCGGCGTGAAGGGGG ACGCCCCAAAGATTATCAACAATGGCGTTCCGGTGAAAGAACAATCCATG GGCAAGAGTGCCGCCCAGAATGCACGCTATGAAGCGCGAAGCCGATCATG GAATGGCATGTTTGCTCAACTACCACGGCAGCTCTCCATGGAATCGCGCT CTCGAAGGAACGGACGGACGGAAGGGAAAGAGAAGTCGCACAAGATGACC GGATGGGGGAAACACGGACAAGATACTCCGAAGAAAACCCTCAGTGCTTT TCGACGGAAGAAGAAATCCTATACCGCTTCAGCCGCGGCCGCCCAAAATG TTACCCCGCTGGAGGGCCACACGGGAGGGGCAGGAGTGCCCATCGTTACC GCTGGTGAATTTGGTCTTAATGGTCCGCAGGTTGTTTCCGCTCGATCGAA CTCAATATCTGTGCCCCCTAGTGGTAATACGGATGATGAACTGCTCTCGG CCCATGAAGATGTTACGGACTTTGCGAGTACAAGCAGTCTCCCGACTACT GAGCGTACGATCAATGGAGGAATGGCTTCGGATGAGAATCATACTGGTTT CGCAAATCATCATCTTCTCGCATCCAATCATGAGGTTCATGGCTCAAAGT TTGCAAACGGGCATGTGAACGGATCTTTAGAAGAAGGAAATACGCTTCCT GTTATCTTCGAGAAAGATTCAGGATTAACCCCCCTCAAAGGTGGTGCGGC ATGGCGACGGAGCAGAGGCCGACATGAAGATCTTGACACAATGTCTGATG CAACGCATCGAAAAGTGTATGGCCCTTATGATGGCCGGTATCGAAGTGAT GAGAGCGGCCAAAATCCTTCGAGATCTGTTCTTTCCTCTTTCCATAACTC GGCAAGCAAAGTTTTCACTACAAAGCCCAATGGTAATACTCCTACGGGGC CTCCCCTGACACCAAATGTAACAGCCGTGCGTGCCACGAAAAATAGCTCG TCTTCGGGCAGCAGTCATGTCGGATTTTTTAGAGGTTTGTTCCGAAGAAG ACGCTGA back to topprotein sequence of Gcaud2990.t2 >Gcaud2990.t2 ID=Gcaud2990.t2|Name=Gcaud2990.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=819bp
MATCNGPLIRRNCAFNLPGVAKALGDKYALELSGLCDYLAKDTDEEVRFI LAAGIHETTALLAPRGNFERLFTAVCSLLQDENAMVRMNALAHFHDLLTA FARDGSDPASVRRLAPVFSDLTVLSEGEWRIQKSLAEQLAKCAEIIPADA LMDHVLPLLYRLTSQGTPLVREAAMDATIKSIRNIPNTKDRNSAIDKYWK AATRGPFWMRLALLDGGTSAMKVFSHRRFQELFSGHMLSLAIDPVVNVRI RLANLLPSMAPMCGGSAAYEKAISILKNDTDVDVLALLQKHPDRVSEFMR QAIERRAEDQARYREEQEFYGFSPRTQKRARGRLGSTRGNRRIMHVRRPS LEQSSGQLSVSKAVISAAKASSAAASMMKPSAYHNQKLSEVDSAVYLDPM ADTSVDGSYPNAVTEDLGGNSKGEESILSSIVNESLQPSTSVEMPNSIRP NGLHPHVSALFEQQQRLQSQQSTQTKQQSGVKGDAPKIINNGVPVKEQSM GKSAAQNARYEARSRSWNGMFAQLPRQLSMESRSRRNGRTEGKEKSHKMT GWGKHGQDTPKKTLSAFRRKKKSYTASAAAAQNVTPLEGHTGGAGVPIVT AGEFGLNGPQVVSARSNSISVPPSGNTDDELLSAHEDVTDFASTSSLPTT ERTINGGMASDENHTGFANHHLLASNHEVHGSKFANGHVNGSLEEGNTLP VIFEKDSGLTPLKGGAAWRRSRGRHEDLDTMSDATHRKVYGPYDGRYRSD ESGQNPSRSVLSSFHNSASKVFTTKPNGNTPTGPPLTPNVTAVRATKNSS SSGSSHVGFFRGLFRRRR* back to topmRNA from alignment at NODE_641_length_20422_cov_4.560720:17732..20188- Legend: polypeptideCDSexonstart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud2990.t2 ID=Gcaud2990.t2|Name=Gcaud2990.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2457bp|location=Sequence derived from alignment at NODE_641_length_20422_cov_4.560720:17732..20188- (Gracilaria caudata M_176_S67 male) ATGGCAACTTGCAACGGGCCACTCATTCGACGTAACTGTGCATTCAACCT
TCCAGGAGTTGCAAAGGCGTTGGGAGACAAGTATGCCTTAGAGTTGAGCG
GTCTGTGCGACTATCTAGCCAAGGATACGGATGAGGAGGTCCGATTCATT
CTGGCAGCCGGTATCCACGAGACTACAGCTTTGCTGGCACCGCGCGGTAA
TTTCGAACGTCTGTTCACCGCTGTATGTTCTTTGCTCCAGGACGAAAACG
CTATGGTACGTATGAATGCCTTGGCTCATTTTCACGACTTACTTACCGCC
TTTGCGCGTGATGGAAGTGACCCTGCTTCAGTTAGAAGGCTGGCTCCGGT
CTTCTCTGACCTCACGGTGCTGTCGGAAGGGGAGTGGAGAATACAAAAGA
GTCTTGCTGAGCAGCTCGCGAAGTGCGCCGAGATTATTCCTGCAGACGCT
CTGATGGACCATGTACTGCCGTTGTTATATCGCCTCACCAGTCAGGGGAC
TCCGCTCGTGCGCGAAGCCGCTATGGATGCCACTATTAAGTCTATTCGTA
ATATTCCCAACACAAAAGACCGCAACAGTGCCATCGATAAGTACTGGAAG
GCAGCCACAAGAGGTCCATTCTGGATGCGACTCGCCTTGCTTGATGGAGG
CACATCTGCTATGAAAGTGTTCAGTCATCGACGCTTTCAGGAGCTGTTTT
CTGGCCATATGCTCTCATTGGCCATTGACCCGGTCGTCAACGTGCGTATT
AGGCTTGCCAATTTGCTTCCATCTATGGCCCCCATGTGTGGTGGGTCTGC
TGCATACGAGAAGGCTATTAGTATACTGAAGAATGATACAGATGTCGATG
TGCTTGCTCTTCTGCAAAAGCACCCCGATCGGGTAAGCGAGTTTATGCGA
CAGGCGATTGAGCGAAGGGCTGAGGATCAAGCCCGATACCGCGAGGAACA
GGAGTTCTATGGATTTTCTCCTAGAACTCAGAAGCGCGCTAGAGGAAGGC
TGGGTTCAACCCGTGGGAATCGGCGGATAATGCATGTAAGACGTCCAAGT
CTCGAACAGTCATCTGGGCAGCTGTCTGTCTCCAAAGCCGTCATATCCGC
AGCAAAGGCCAGTTCTGCTGCAGCTTCCATGATGAAACCAAGTGCCTATC
ACAACCAAAAGTTGTCAGAAGTTGACTCTGCAGTGTATCTTGATCCTATG
GCTGACACAAGTGTCGATGGCAGCTACCCCAACGCTGTTACAGAAGACCT
TGGTGGCAATTCGAAAGGAGAGGAAAGCATTTTGAGCAGTATTGTGAATG
AATCTCTTCAACCATCTACGTCAGTTGAAATGCCCAATAGCATCCGTCCT
AATGGGCTCCACCCTCACGTGTCTGCCCTTTTTGAGCAGCAACAAAGATT
ACAATCACAACAATCCACGCAAACAAAACAGCAGAGCGGCGTGAAGGGGG
ACGCCCCAAAGATTATCAACAATGGCGTTCCGGTGAAAGAACAATCCATG
GGCAAGAGTGCCGCCCAGAATGCACGCTATGAAGCGCGAAGCCGATCATG
GAATGGCATGTTTGCTCAACTACCACGGCAGCTCTCCATGGAATCGCGCT
CTCGAAGGAACGGACGGACGGAAGGGAAAGAGAAGTCGCACAAGATGACC
GGATGGGGGAAACACGGACAAGATACTCCGAAGAAAACCCTCAGTGCTTT
TCGACGGAAGAAGAAATCCTATACCGCTTCAGCCGCGGCCGCCCAAAATG
TTACCCCGCTGGAGGGCCACACGGGAGGGGCAGGAGTGCCCATCGTTACC
GCTGGTGAATTTGGTCTTAATGGTCCGCAGGTTGTTTCCGCTCGATCGAA
CTCAATATCTGTGCCCCCTAGTGGTAATACGGATGATGAACTGCTCTCGG
CCCATGAAGATGTTACGGACTTTGCGAGTACAAGCAGTCTCCCGACTACT
GAGCGTACGATCAATGGAGGAATGGCTTCGGATGAGAATCATACTGGTTT
CGCAAATCATCATCTTCTCGCATCCAATCATGAGGTTCATGGCTCAAAGT
TTGCAAACGGGCATGTGAACGGATCTTTAGAAGAAGGAAATACGCTTCCT
GTTATCTTCGAGAAAGATTCAGGATTAACCCCCCTCAAAGGTGGTGCGGC
ATGGCGACGGAGCAGAGGCCGACATGAAGATCTTGACACAATGTCTGATG
CAACGCATCGAAAAGTGTATGGCCCTTATGATGGCCGGTATCGAAGTGAT
GAGAGCGGCCAAAATCCTTCGAGATCTGTTCTTTCCTCTTTCCATAACTC
GGCAAGCAAAGTTTTCACTACAAAGCCCAATGGTAATACTCCTACGGGGC
CTCCCCTGACACCAAATGTAACAGCCGTGCGTGCCACGAAAAATAGCTCG
TCTTCGGGCAGCAGTCATGTCGGATTTTTTAGAGGTTTGTTCCGAAGAAG
ACGCTGA back to topCoding sequence (CDS) from alignment at NODE_641_length_20422_cov_4.560720:17732..20188- >Gcaud2990.t2 ID=Gcaud2990.t2|Name=Gcaud2990.t2|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2457bp|location=Sequence derived from alignment at NODE_641_length_20422_cov_4.560720:17732..20188- (Gracilaria caudata M_176_S67 male) ATGGCAACTTGCAACGGGCCACTCATTCGACGTAACTGTGCATTCAACCT TCCAGGAGTTGCAAAGGCGTTGGGAGACAAGTATGCCTTAGAGTTGAGCG GTCTGTGCGACTATCTAGCCAAGGATACGGATGAGGAGGTCCGATTCATT CTGGCAGCCGGTATCCACGAGACTACAGCTTTGCTGGCACCGCGCGGTAA TTTCGAACGTCTGTTCACCGCTGTATGTTCTTTGCTCCAGGACGAAAACG CTATGGTACGTATGAATGCCTTGGCTCATTTTCACGACTTACTTACCGCC TTTGCGCGTGATGGAAGTGACCCTGCTTCAGTTAGAAGGCTGGCTCCGGT CTTCTCTGACCTCACGGTGCTGTCGGAAGGGGAGTGGAGAATACAAAAGA GTCTTGCTGAGCAGCTCGCGAAGTGCGCCGAGATTATTCCTGCAGACGCT CTGATGGACCATGTACTGCCGTTGTTATATCGCCTCACCAGTCAGGGGAC TCCGCTCGTGCGCGAAGCCGCTATGGATGCCACTATTAAGTCTATTCGTA ATATTCCCAACACAAAAGACCGCAACAGTGCCATCGATAAGTACTGGAAG GCAGCCACAAGAGGTCCATTCTGGATGCGACTCGCCTTGCTTGATGGAGG CACATCTGCTATGAAAGTGTTCAGTCATCGACGCTTTCAGGAGCTGTTTT CTGGCCATATGCTCTCATTGGCCATTGACCCGGTCGTCAACGTGCGTATT AGGCTTGCCAATTTGCTTCCATCTATGGCCCCCATGTGTGGTGGGTCTGC TGCATACGAGAAGGCTATTAGTATACTGAAGAATGATACAGATGTCGATG TGCTTGCTCTTCTGCAAAAGCACCCCGATCGGGTAAGCGAGTTTATGCGA CAGGCGATTGAGCGAAGGGCTGAGGATCAAGCCCGATACCGCGAGGAACA GGAGTTCTATGGATTTTCTCCTAGAACTCAGAAGCGCGCTAGAGGAAGGC TGGGTTCAACCCGTGGGAATCGGCGGATAATGCATGTAAGACGTCCAAGT CTCGAACAGTCATCTGGGCAGCTGTCTGTCTCCAAAGCCGTCATATCCGC AGCAAAGGCCAGTTCTGCTGCAGCTTCCATGATGAAACCAAGTGCCTATC ACAACCAAAAGTTGTCAGAAGTTGACTCTGCAGTGTATCTTGATCCTATG GCTGACACAAGTGTCGATGGCAGCTACCCCAACGCTGTTACAGAAGACCT TGGTGGCAATTCGAAAGGAGAGGAAAGCATTTTGAGCAGTATTGTGAATG AATCTCTTCAACCATCTACGTCAGTTGAAATGCCCAATAGCATCCGTCCT AATGGGCTCCACCCTCACGTGTCTGCCCTTTTTGAGCAGCAACAAAGATT ACAATCACAACAATCCACGCAAACAAAACAGCAGAGCGGCGTGAAGGGGG ACGCCCCAAAGATTATCAACAATGGCGTTCCGGTGAAAGAACAATCCATG GGCAAGAGTGCCGCCCAGAATGCACGCTATGAAGCGCGAAGCCGATCATG GAATGGCATGTTTGCTCAACTACCACGGCAGCTCTCCATGGAATCGCGCT CTCGAAGGAACGGACGGACGGAAGGGAAAGAGAAGTCGCACAAGATGACC GGATGGGGGAAACACGGACAAGATACTCCGAAGAAAACCCTCAGTGCTTT TCGACGGAAGAAGAAATCCTATACCGCTTCAGCCGCGGCCGCCCAAAATG TTACCCCGCTGGAGGGCCACACGGGAGGGGCAGGAGTGCCCATCGTTACC GCTGGTGAATTTGGTCTTAATGGTCCGCAGGTTGTTTCCGCTCGATCGAA CTCAATATCTGTGCCCCCTAGTGGTAATACGGATGATGAACTGCTCTCGG CCCATGAAGATGTTACGGACTTTGCGAGTACAAGCAGTCTCCCGACTACT GAGCGTACGATCAATGGAGGAATGGCTTCGGATGAGAATCATACTGGTTT CGCAAATCATCATCTTCTCGCATCCAATCATGAGGTTCATGGCTCAAAGT TTGCAAACGGGCATGTGAACGGATCTTTAGAAGAAGGAAATACGCTTCCT GTTATCTTCGAGAAAGATTCAGGATTAACCCCCCTCAAAGGTGGTGCGGC ATGGCGACGGAGCAGAGGCCGACATGAAGATCTTGACACAATGTCTGATG CAACGCATCGAAAAGTGTATGGCCCTTATGATGGCCGGTATCGAAGTGAT GAGAGCGGCCAAAATCCTTCGAGATCTGTTCTTTCCTCTTTCCATAACTC GGCAAGCAAAGTTTTCACTACAAAGCCCAATGGTAATACTCCTACGGGGC CTCCCCTGACACCAAATGTAACAGCCGTGCGTGCCACGAAAAATAGCTCG TCTTCGGGCAGCAGTCATGTCGGATTTTTTAGAGGTTTGTTCCGAAGAAG ACGCTGA back to top
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