Gcaud2985.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2985.t1
Unique NameGcaud2985.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length211
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_641_length_20422_cov_4.560720contigNODE_641_length_20422_cov_4.560720:2831..3463 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705505.1
Preferred nameSTX6
PFAMsSNARE,Syntaxin-6_N
Max annot lvl2759|Eukaryota
KEGG koko:K02925,ko:K03691,ko:K08498,ko:K08499,ko:K08500
KEGG ReactionR09295
KEGG Pathwayko00514,ko03010,ko04130,map00514,map03010,map04130
KEGG ModuleM00177
GOsGO:0000138,GO:0000139,GO:0000149,GO:0001505,GO:0003674,GO:0003824,GO:0005484,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005768,GO:0005769,GO:0005770,GO:0005783,GO:0005794,GO:0005795,GO:0005802,GO:0005829,GO:0005886,GO:0006464,GO:0006486,GO:0006493,GO:0006807,GO:0006810,GO:0006836,GO:0006886,GO:0006887,GO:0006897,GO:0006904,GO:0006906,GO:0006996,GO:0007030,GO:0007032,GO:0007154,GO:0007267,GO:0007268,GO:0007269,GO:0008021,GO:0008104,GO:0008150,GO:0008152,GO:0008417,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0010008,GO:0010256,GO:0012505,GO:0012506,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016079,GO:0016081,GO:0016192,GO:0016197,GO:0016482,GO:0016740,GO:0016757,GO:0016758,GO:0017156,GO:0019538,GO:0019905,GO:0022406,GO:0023052,GO:0023061,GO:0030133,GO:0030135,GO:0030136,GO:0030139,GO:0030285,GO:0030424,GO:0030658,GO:0030659,GO:0030672,GO:0031090,GO:0031201,GO:0031224,GO:0031300,GO:0031301,GO:0031410,GO:0031902,GO:0031974,GO:0031981,GO:0031982,GO:0031984,GO:0031985,GO:0032456,GO:0032588,GO:0032879,GO:0032880,GO:0032940,GO:0032991,GO:0033036,GO:0033267,GO:0034613,GO:0034645,GO:0036065,GO:0036066,GO:0036211,GO:0042147,GO:0042886,GO:0042995,GO:0043005,GO:0043170,GO:0043195,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043413,GO:0043679,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044306,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044456,GO:0044463,GO:0044464,GO:0045055,GO:0045184,GO:0045202,GO:0045335,GO:0046903,GO:0046907,GO:0046922,GO:0048278,GO:0048284,GO:0048471,GO:0048489,GO:0050789,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0055037,GO:0060341,GO:0061024,GO:0061025,GO:0065007,GO:0065008,GO:0070013,GO:0070085,GO:0070382,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0090161,GO:0090174,GO:0097458,GO:0097479,GO:0097480,GO:0097708,GO:0098563,GO:0098588,GO:0098657,GO:0098791,GO:0098793,GO:0098796,GO:0098805,GO:0098916,GO:0099003,GO:0099501,GO:0099503,GO:0099504,GO:0099536,GO:0099537,GO:0099643,GO:0120025,GO:0120038,GO:0140029,GO:0140056,GO:0140096,GO:0150034,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1903827
Evalue8.02e-26
EggNOG OGsKOG3202@1|root,KOG3202@2759|Eukaryota
EC2.4.1.221
DescriptionSNAP receptor activity
COG categoryU
CAZyGT65,GT68
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko01003,ko03011,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2985Gcaud2985Gracilaria caudata M_176_S67 malegeneNODE_641_length_20422_cov_4.560720 2831..3463 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2985.t1.start1Gcaud2985.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_641_length_20422_cov_4.560720 2831..2833 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2985.t1.CDS1Gcaud2985.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_641_length_20422_cov_4.560720 2831..3463 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2985.t1.exon1Gcaud2985.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_641_length_20422_cov_4.560720 2831..3463 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2985.t1.stop1Gcaud2985.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_641_length_20422_cov_4.560720 3461..3463 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2985.t1Gcaud2985.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_641_length_20422_cov_4.560720 2831..3463 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2985.t1 ID=Gcaud2985.t1|Name=Gcaud2985.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=211bp
MTQEDPFPIVQEEVRAAWASLSKDISHISEAQYQSRLQALECDVNDLSDA
IQVARQDRQRFGLSEHEIASRQHFVSDMQRNILALRKRAEFTPTTSASRA
EEVRRANDSFIGSELRQQEVLMEHQDVQLGELANAVERIGIMGRDMHQEL
EEQGQMLDDLGGEMVDARSRMKAVHRKLNKFIEETGPRNFCTIVGLCITF
VVLTFLVVTT*
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spliced messenger RNA

>Gcaud2985.t1 ID=Gcaud2985.t1|Name=Gcaud2985.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=633bp|location=Sequence derived from alignment at NODE_641_length_20422_cov_4.560720:2831..3463+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGCAAGAAGACCCGTTCCCAATCGTACAGGAGGAGGTGCGTGCCGC
CTGGGCATCGCTATCAAAAGACATATCGCACATTTCTGAAGCTCAATATC
AATCACGTCTACAAGCGCTGGAATGCGACGTCAATGATCTTTCCGACGCC
ATCCAGGTCGCGCGACAAGATAGACAGCGCTTCGGATTATCGGAACATGA
GATTGCCTCACGTCAGCATTTTGTGTCCGACATGCAAAGAAACATCTTGG
CGTTGCGCAAACGAGCCGAGTTTACTCCCACCACTTCTGCGTCACGTGCC
GAGGAGGTTCGTCGCGCAAATGATTCGTTCATTGGAAGTGAACTGAGACA
GCAGGAGGTGTTAATGGAACATCAAGACGTTCAGCTGGGAGAGCTAGCAA
ACGCAGTTGAAAGAATTGGCATAATGGGAAGAGATATGCATCAGGAGCTC
GAAGAACAAGGACAAATGCTCGATGATCTTGGTGGTGAAATGGTTGACGC
ACGTTCCAGAATGAAGGCCGTACATCGCAAGTTGAACAAGTTCATCGAAG
AAACAGGACCTAGAAATTTCTGCACCATTGTTGGCTTGTGCATCACATTC
GTCGTGCTCACCTTTCTGGTAGTGACCACGTGA
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protein sequence of Gcaud2985.t1

>Gcaud2985.t1 ID=Gcaud2985.t1|Name=Gcaud2985.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=211bp
MTQEDPFPIVQEEVRAAWASLSKDISHISEAQYQSRLQALECDVNDLSDA
IQVARQDRQRFGLSEHEIASRQHFVSDMQRNILALRKRAEFTPTTSASRA
EEVRRANDSFIGSELRQQEVLMEHQDVQLGELANAVERIGIMGRDMHQEL
EEQGQMLDDLGGEMVDARSRMKAVHRKLNKFIEETGPRNFCTIVGLCITF
VVLTFLVVTT*
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mRNA from alignment at NODE_641_length_20422_cov_4.560720:2831..3463+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2985.t1 ID=Gcaud2985.t1|Name=Gcaud2985.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=633bp|location=Sequence derived from alignment at NODE_641_length_20422_cov_4.560720:2831..3463+ (Gracilaria caudata M_176_S67 male)
ATGACGCAAGAAGACCCGTTCCCAATCGTACAGGAGGAGGTGCGTGCCGC
CTGGGCATCGCTATCAAAAGACATATCGCACATTTCTGAAGCTCAATATC
AATCACGTCTACAAGCGCTGGAATGCGACGTCAATGATCTTTCCGACGCC
ATCCAGGTCGCGCGACAAGATAGACAGCGCTTCGGATTATCGGAACATGA
GATTGCCTCACGTCAGCATTTTGTGTCCGACATGCAAAGAAACATCTTGG
CGTTGCGCAAACGAGCCGAGTTTACTCCCACCACTTCTGCGTCACGTGCC
GAGGAGGTTCGTCGCGCAAATGATTCGTTCATTGGAAGTGAACTGAGACA
GCAGGAGGTGTTAATGGAACATCAAGACGTTCAGCTGGGAGAGCTAGCAA
ACGCAGTTGAAAGAATTGGCATAATGGGAAGAGATATGCATCAGGAGCTC
GAAGAACAAGGACAAATGCTCGATGATCTTGGTGGTGAAATGGTTGACGC
ACGTTCCAGAATGAAGGCCGTACATCGCAAGTTGAACAAGTTCATCGAAG
AAACAGGACCTAGAAATTTCTGCACCATTGTTGGCTTGTGCATCACATTC
GTCGTGCTCACCTTTCTGGTAGTGACCACGTGA
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Coding sequence (CDS) from alignment at NODE_641_length_20422_cov_4.560720:2831..3463+

>Gcaud2985.t1 ID=Gcaud2985.t1|Name=Gcaud2985.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=633bp|location=Sequence derived from alignment at NODE_641_length_20422_cov_4.560720:2831..3463+ (Gracilaria caudata M_176_S67 male)
ATGACGCAAGAAGACCCGTTCCCAATCGTACAGGAGGAGGTGCGTGCCGC
CTGGGCATCGCTATCAAAAGACATATCGCACATTTCTGAAGCTCAATATC
AATCACGTCTACAAGCGCTGGAATGCGACGTCAATGATCTTTCCGACGCC
ATCCAGGTCGCGCGACAAGATAGACAGCGCTTCGGATTATCGGAACATGA
GATTGCCTCACGTCAGCATTTTGTGTCCGACATGCAAAGAAACATCTTGG
CGTTGCGCAAACGAGCCGAGTTTACTCCCACCACTTCTGCGTCACGTGCC
GAGGAGGTTCGTCGCGCAAATGATTCGTTCATTGGAAGTGAACTGAGACA
GCAGGAGGTGTTAATGGAACATCAAGACGTTCAGCTGGGAGAGCTAGCAA
ACGCAGTTGAAAGAATTGGCATAATGGGAAGAGATATGCATCAGGAGCTC
GAAGAACAAGGACAAATGCTCGATGATCTTGGTGGTGAAATGGTTGACGC
ACGTTCCAGAATGAAGGCCGTACATCGCAAGTTGAACAAGTTCATCGAAG
AAACAGGACCTAGAAATTTCTGCACCATTGTTGGCTTGTGCATCACATTC
GTCGTGCTCACCTTTCTGGTAGTGACCACGTGA
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