Gcaud2146.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2146.t1
Unique NameGcaud2146.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length521
Homology
BLAST of Gcaud2146.t1 vs. uniprot
Match: R7QKY7_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QKY7_CHOCR)

HSP 1 Score: 271 bits (694), Expect = 1.070e-80
Identity = 168/323 (52.01%), Postives = 212/323 (65.63%), Query Frame = 0
Query:  135 QAQQPGAQQQQQIEITLRTRISELPQNFQNDLFAVERHLREQRNKASLLWSKRGDVDAKLLQTKTNASDISRLLVKLRAELDALEANGNSLKAAVRLERASAQPVMTALENLSRRGY--SGYVDQNGLPYMDSGGRVQ----AAHVPDGYFTRIVEELEARATEYKAEVDEIAAFLKAQGVMMS----------SGASGFGGASASLLDNLSQRYVDIGLSGSDAKSVPRG-TIEDIIRRQYEYFMVVASHIAGVHENLRAVREQFLQVLMERDSDVPNPFQQADMREKVEKERQRLQTEKRAADGALQFVSQMNSLNQPSSA 440
            Q QQP   Q Q  EI LRTR+ +LPQNFQ DLFAVERHLREQR K + L S   + D+ + QTKT +++I+R L KLRA L+AL AN  +LKAAVR+ER S +PV+ ALENLS+  +     +  +   +   G  VQ      HVP+ YF+R ++ELE+RA EYK E+DEIA FL+A+G+++S          S  S  G A+ SLLD++SQR   IGL  +D     RG TIEDIIRRQYEYFMVVASHI GVHENL A+REQFLQ+L  RD D  NPF+ AD REK E++R R   E +AA+    F   MN    P++A
Sbjct:  172 QQQQPQQSQSQTSEINLRTRVWQLPQNFQTDLFAVERHLREQRIKGTQLLSTGSNFDSDIAQTKTRSTNITRRLAKLRAVLEALRANSETLKAAVRIERGSTEPVVLALENLSKNSFRSEAVLFDDAFSFNYHGSSVQMRDRVTHVPEDYFSRTLDELESRAHEYKREIDEIAEFLRAKGLVLSRSGGKSAIAPSSHSATGTANGSLLDSISQRQFGIGLGANDMSMESRGKTIEDIIRRQYEYFMVVASHIGGVHENLWALREQFLQLLRVRDPDALNPFELADRREKAEEQR-RQSAENKAAENGFGF--SMNESANPAAA 491          
BLAST of Gcaud2146.t1 vs. uniprot
Match: A0A2V3IH16_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IH16_9FLOR)

HSP 1 Score: 256 bits (655), Expect = 7.370e-79
Identity = 145/198 (73.23%), Postives = 168/198 (84.85%), Query Frame = 0
Query:  269 VQAAHVPDGYFTRIVEELEARATEYKAEVDEIAAFLKAQGVMMSSGASGFG-GASASLLDNLSQRYVDIGLSGSDAKSVPRG-TIEDIIRRQYEYFMVVASHIAGVHENLRAVREQFLQVLMERDSDVPNPFQQADMREKVEKERQRLQTEKRAADGALQFVSQMNSLNQPSSAPGTF---VTATGFGASSAAAISST 461
            +QAAHVPD YFTR+VEELEARATEYKAE+DE+A FLKAQG+++SSGASGFG G SASLLDNLSQRY+DIGLS SD  ++PRG TIEDIIRRQY+YFMVVASHIA V+ENLRAV+EQ+LQVL ERDSDV NPFQQADMREKVEK+RQRL  EKRAA GAL FV+ +N+L Q S+A G+    +   G G+SSAA   +T
Sbjct:    1 MQAAHVPDEYFTRVVEELEARATEYKAEIDEVAEFLKAQGIVLSSGASGFGNGMSASLLDNLSQRYMDIGLSASDMGNIPRGRTIEDIIRRQYDYFMVVASHIANVNENLRAVKEQYLQVLRERDSDVLNPFQQADMREKVEKDRQRLLAEKRAAVGALSFVNSVNALPQSSAATGSAFGNLGTIGIGSSSAAGTLTT 198          
BLAST of Gcaud2146.t1 vs. uniprot
Match: A0A5J4Z7G7_PORPP (Nucleoporin p58/p45 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z7G7_PORPP)

HSP 1 Score: 100 bits (248), Expect = 1.450e-18
Identity = 85/273 (31.14%), Postives = 134/273 (49.08%), Query Frame = 0
Query:  153 TRISELPQNFQNDLFAVERHLREQRNKASLLWSKRG---DVDAKLLQTKTNASDISRLLVKLRAELDALEANGNSLKAAVRLERASAQPVMTALEN--LSRRGYSGYVD---QNGLPYMDSGGRVQAAHVPDGYFTRIVEELEARATEYKAEVDEIAAFLKAQGVMMSSGASGFGGASASLLDNLSQRYVDIGLSGSDAKSVPRGT-----IEDIIRRQYEYFMVVASHIAGVHENLRAVREQFLQVLMERDSDVPNPFQQADMREKVEKERQ 412
            T+I++LP + Q+ L+ +E+H+REQ+ KAS +    G   DV  +     T  + +  +L K RA + AL       K  VR +  SA+    ALEN  L+++  S Y     + G  Y   GG  Q   +P  +   +V  LE RA EYK EVDEI  FL+   + +           A L    ++     G   +  +S P        +E +IRR YEYF++VAS    +H+ +  ++ +++Q L E + D P+PF++A  R    K R+
Sbjct:  251 TKIADLPPHAQSLLYGLEKHMREQKKKASRMPQHEGLFRDVGERCDHVATACASVKNVLDKERAAVGAL-------KYDVRAQLKSAENAAIALENDRLNKQHASMYGTTTLRGGSLYQIRGGFEQ--RLPSDFILSMVAGLEKRALEYKKEVDEIDKFLRTAHLDLD----------APLETTYNEVLSRAGGRAAPVRSGPAHVSKAKKLEQVIRRMYEYFLLVASQYGNLHDAVDGLKAEYMQWLQETNPDAPDPFEEARRRAVAAKARE 504          
The following BLAST results are available for this feature:
BLAST of Gcaud2146.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
R7QKY7_CHOCR1.070e-8052.01Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A2V3IH16_9FLOR7.370e-7973.23Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A5J4Z7G7_PORPP1.450e-1831.14Nucleoporin p58/p45 n=1 Tax=Porphyridium purpureum... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 283..303
NoneNo IPR availableCOILSCoilCoilcoord: 201..228
NoneNo IPR availableCOILSCoilCoilcoord: 400..424
NoneNo IPR availableGENE3D6.10.140.1350coord: 272..393
e-value: 8.3E-14
score: 53.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 491..520
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 491..508
IPR024882Nucleoporin p58/p45PANTHERPTHR13437NUCLEOPORIN P58/P45 NUCLEOPORIN-LIKE PROTEIN 1coord: 118..496

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_116_length_48691_cov_4.274671contigNODE_116_length_48691_cov_4.274671:45763..47325 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2146.t1Gcaud2146.t1Gracilaria caudata M_176_S67 malemRNANODE_116_length_48691_cov_4.274671 45763..47325 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2146.t1 ID=Gcaud2146.t1|Name=Gcaud2146.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=521bp
MFGTAQSTPSLFASSQAQSTSLFGAASSSSLFGGGSAQQSSSSFLFGGAA
PQSTAGTLFGGAASSSSLFVGGASSSSLFGGGASSSSLFGSASSSSLFGG
SASSSSLFGGVSASSSSLFGQPSGGSLFGSAPSTQAQQPGAQQQQQIEIT
LRTRISELPQNFQNDLFAVERHLREQRNKASLLWSKRGDVDAKLLQTKTN
ASDISRLLVKLRAELDALEANGNSLKAAVRLERASAQPVMTALENLSRRG
YSGYVDQNGLPYMDSGGRVQAAHVPDGYFTRIVEELEARATEYKAEVDEI
AAFLKAQGVMMSSGASGFGGASASLLDNLSQRYVDIGLSGSDAKSVPRGT
IEDIIRRQYEYFMVVASHIAGVHENLRAVREQFLQVLMERDSDVPNPFQQ
ADMREKVEKERQRLQTEKRAADGALQFVSQMNSLNQPSSAPGTFVTATGF
GASSAAAISSTQSSLFQSSATTSSLFGGASSSAGSSSGSLFGGGFSFGGS
TPASATDGGEPNRATRRKRE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR024882Nucleoporin_p58/p45