|
|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 42345.XP_008802119.1 |
| Preferred name | CUL1 |
| PFAMs | Cullin,Cullin_Nedd8 |
| Max annot lvl | 35493|Streptophyta |
| KEGG ko | ko:K03347 |
| KEGG Pathway | ko04110,ko04111,ko04114,ko04120,ko04141,ko04310,ko04340,ko04341,ko04350,ko04710,ko05168,ko05200,map04110,map04111,map04114,map04120,map04141,map04310,map04340,map04341,map04350,map04710,map05168,map05200 |
| KEGG Module | M00379,M00380,M00381,M00382,M00387,M00407,M00411 |
| GOs | GO:0000003,GO:0000151,GO:0000228,GO:0000793,GO:0000794,GO:0001101,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005819,GO:0005829,GO:0005856,GO:0007154,GO:0007165,GO:0007275,GO:0008150,GO:0009524,GO:0009719,GO:0009725,GO:0009733,GO:0009753,GO:0009755,GO:0009790,GO:0009791,GO:0009793,GO:0009867,GO:0009888,GO:0009987,GO:0010033,GO:0010087,GO:0010154,GO:0015630,GO:0019899,GO:0022414,GO:0023052,GO:0031461,GO:0031625,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032870,GO:0032991,GO:0042221,GO:0042752,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044389,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0048316,GO:0048366,GO:0048367,GO:0048608,GO:0048731,GO:0048827,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0061458,GO:0065007,GO:0070013,GO:0070887,GO:0071229,GO:0071310,GO:0071395,GO:0071495,GO:0099402,GO:1901700,GO:1901701,GO:1902494,GO:1990234 |
| Evalue | 3.05e-194 |
| EggNOG OGs | COG5647@1|root,KOG2166@2759|Eukaryota,37NXT@33090|Viridiplantae,3GAB6@35493|Streptophyta,3KMI3@4447|Liliopsida |
| Description | Belongs to the cullin family |
| COG category | D |
| BRITE | ko00000,ko00001,ko00002,ko04121 |
Relationships
This mRNA is a part of the following gene feature(s):
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud8721.t1.stop1 | Gcaud8721.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_61_length_58397_cov_4.831458 27978..27980 - |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud8721.t1.start1 | Gcaud8721.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_61_length_58397_cov_4.831458 30393..30395 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud8721.t1 ID=Gcaud8721.t1|Name=Gcaud8721.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=806bp MEEPGIDIDAGWAIIESRGFEPLAAVLDADGDYRRRHGTDGPKEWNHIYT TVYKMCIQKTPRSYAKDLYQRVQGTLKAYLRSSCLPAIQRTIGEESMLRE LRRRWSNHKLMVKWVTRTFSYIDRYYVKRNEEPSLEHAGYMCFRIEVFDN IVASVRKAALNIVQRERDGDNVDRSLLRGVLDIFVEMGMGKLDVYTFEWE APFLEETADFYRRTSAKWAEEDSFPDFMRKADSNIIEELERATQYLNGQT QERLLRVYEEEVLIVHQKKMLSKDNSGLVALLENNKKDDLMRLYRLYSRV PNGLVPVGQILKNHIQKEGMELVREQRSFIENSKTESTQKGMRDEAQTPT TPSRHGPSSSADKPEYIQRLIALHDRYTELVTNCFSKHAVFTKAMKEAFE RFVNEQVGDSSTAQLFANYCDSLLNSGGRGAKMAEADVETQLEKLVKLFT YLTEKDVFQEFCRKQLAKRLLLDRSHSDDAERHLISKLKQSCGAHFTSKL EGMITDINVSRDTQTQFREWNIGLNRESSGTAGRSLSGTSSSAVVIGSVE FSVRVLTTGHWPTYSEDIVVLPAQLELCERRFKEFYDKRTSQRVLRWVHS LGKGSLETSLFTGKRAYQRIELHVSTHQLCILVLFNFTDHVTYAQILETL HDKSRKANSNARDSEDLLKASLVSLMSRKTPLLLKEPKSREFSRTDMFTL NTQFVSPKRRLTVPMPMARINEQEKEAAHDTVVEDRRHAIEAAIVRVMKQ NKTLDHQRLIMEVSKLCNPVFKPEPRAIKNRIEELISREYLARDDSSNSS YRYLA* back to topspliced messenger RNA >Gcaud8721.t1 ID=Gcaud8721.t1|Name=Gcaud8721.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2418bp|location=Sequence derived from alignment at NODE_61_length_58397_cov_4.831458:27978..30395- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGGAGGAGCCAGGGATCGACATCGACGCTGGTTGGGCGATCATTGAGTC GCGTGGTTTCGAGCCTCTCGCCGCAGTTCTTGACGCAGATGGTGATTACA GACGACGTCATGGCACAGATGGGCCAAAGGAGTGGAATCACATCTATACC ACTGTTTACAAAATGTGCATTCAGAAGACGCCGCGCTCCTACGCCAAAGA CCTCTATCAAAGAGTTCAAGGCACATTGAAAGCGTATCTTCGATCATCAT GTCTCCCCGCCATTCAACGTACTATAGGCGAGGAGTCGATGTTGCGAGAG CTTCGCCGAAGATGGTCCAATCACAAGTTGATGGTGAAGTGGGTCACAAG AACATTCTCATATATAGATAGGTACTATGTTAAGCGCAATGAAGAGCCAT CTCTTGAGCACGCGGGATACATGTGCTTCAGAATAGAGGTGTTTGACAAT ATTGTGGCTTCTGTGAGGAAGGCTGCTCTGAATATTGTGCAACGTGAGCG AGATGGTGATAATGTTGATCGGTCTCTTCTACGCGGGGTCTTGGATATCT TTGTGGAGATGGGCATGGGGAAGCTTGATGTGTACACTTTCGAGTGGGAG GCTCCGTTTTTGGAAGAAACTGCTGACTTTTATAGAAGAACTTCAGCAAA ATGGGCGGAGGAAGACTCGTTTCCTGATTTCATGCGAAAAGCCGACTCTA ATATCATTGAAGAACTGGAGCGTGCAACACAATATTTAAATGGACAAACC CAGGAACGTCTCCTAAGAGTATACGAGGAGGAGGTTTTAATAGTTCATCA AAAGAAAATGCTGTCCAAAGACAATTCGGGTCTAGTTGCTCTGCTAGAGA ACAACAAGAAGGACGATCTCATGCGGCTCTATCGCCTGTACTCTCGCGTT CCTAATGGATTGGTTCCAGTTGGACAGATCTTGAAGAACCACATACAGAA GGAAGGAATGGAACTAGTACGAGAACAAAGGAGTTTCATTGAGAATTCAA AAACTGAGTCAACCCAGAAGGGCATGAGAGACGAAGCGCAAACCCCTACG ACACCAAGCCGACATGGTCCGAGTAGCTCAGCAGACAAACCAGAGTACAT CCAAAGACTCATTGCTTTGCATGACAGGTATACGGAGTTGGTCACAAATT GTTTCTCGAAACATGCGGTGTTTACCAAAGCAATGAAAGAAGCGTTTGAG AGGTTTGTAAACGAACAAGTTGGTGACTCTTCAACTGCACAATTGTTTGC GAATTACTGCGACTCACTTCTGAACTCTGGAGGACGAGGTGCAAAAATGG CCGAGGCGGATGTTGAAACCCAACTGGAAAAGCTCGTCAAGTTGTTCACA TACCTCACGGAGAAGGATGTCTTCCAAGAATTCTGTCGGAAACAGTTGGC AAAGCGCCTGCTGTTGGATCGCTCTCATTCTGATGATGCTGAGCGGCACC TCATCAGTAAGTTGAAACAGAGTTGTGGAGCACATTTCACCTCAAAACTG GAGGGGATGATAACCGACATCAATGTTAGCAGGGATACCCAAACTCAATT TCGAGAATGGAACATTGGCCTCAACCGCGAGTCTTCTGGAACTGCAGGCC GCTCTTTGTCTGGCACATCATCGTCAGCGGTAGTTATTGGTTCCGTTGAG TTCTCGGTCAGAGTTTTGACCACTGGGCACTGGCCTACATATTCTGAGGA TATAGTTGTTCTTCCTGCTCAGCTCGAATTATGCGAACGACGTTTTAAGG AATTCTACGATAAGAGAACGTCACAACGAGTACTCAGATGGGTACATTCT CTTGGAAAGGGATCATTAGAAACGAGCTTGTTCACTGGGAAACGTGCTTA CCAACGAATCGAGCTTCATGTTTCGACTCATCAGCTTTGCATTCTTGTCC TGTTCAATTTTACCGATCACGTCACCTACGCGCAAATTCTTGAGACGTTG CATGACAAATCGCGGAAAGCAAACTCGAACGCACGTGATAGCGAAGATCT ACTGAAGGCCTCTCTCGTTTCGTTAATGTCTCGCAAGACCCCTCTGCTCC TTAAGGAACCCAAGAGCCGCGAGTTTAGTCGTACGGATATGTTTACTTTG AACACCCAGTTTGTGTCCCCGAAGAGAAGGCTTACCGTGCCGATGCCGAT GGCCAGAATCAACGAACAGGAAAAAGAAGCGGCGCACGATACCGTTGTTG AAGACAGGCGCCATGCTATTGAGGCTGCTATCGTGAGGGTTATGAAGCAG AATAAGACCTTGGACCATCAACGACTAATAATGGAAGTAAGCAAGCTGTG CAATCCTGTTTTCAAGCCCGAGCCACGTGCCATTAAGAACAGGATTGAAG AGCTGATTAGTCGAGAATACCTGGCTCGAGATGATTCAAGCAATTCTAGT TATAGGTATCTTGCTTAG back to topprotein sequence of Gcaud8721.t1 >Gcaud8721.t1 ID=Gcaud8721.t1|Name=Gcaud8721.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=806bp
MEEPGIDIDAGWAIIESRGFEPLAAVLDADGDYRRRHGTDGPKEWNHIYT TVYKMCIQKTPRSYAKDLYQRVQGTLKAYLRSSCLPAIQRTIGEESMLRE LRRRWSNHKLMVKWVTRTFSYIDRYYVKRNEEPSLEHAGYMCFRIEVFDN IVASVRKAALNIVQRERDGDNVDRSLLRGVLDIFVEMGMGKLDVYTFEWE APFLEETADFYRRTSAKWAEEDSFPDFMRKADSNIIEELERATQYLNGQT QERLLRVYEEEVLIVHQKKMLSKDNSGLVALLENNKKDDLMRLYRLYSRV PNGLVPVGQILKNHIQKEGMELVREQRSFIENSKTESTQKGMRDEAQTPT TPSRHGPSSSADKPEYIQRLIALHDRYTELVTNCFSKHAVFTKAMKEAFE RFVNEQVGDSSTAQLFANYCDSLLNSGGRGAKMAEADVETQLEKLVKLFT YLTEKDVFQEFCRKQLAKRLLLDRSHSDDAERHLISKLKQSCGAHFTSKL EGMITDINVSRDTQTQFREWNIGLNRESSGTAGRSLSGTSSSAVVIGSVE FSVRVLTTGHWPTYSEDIVVLPAQLELCERRFKEFYDKRTSQRVLRWVHS LGKGSLETSLFTGKRAYQRIELHVSTHQLCILVLFNFTDHVTYAQILETL HDKSRKANSNARDSEDLLKASLVSLMSRKTPLLLKEPKSREFSRTDMFTL NTQFVSPKRRLTVPMPMARINEQEKEAAHDTVVEDRRHAIEAAIVRVMKQ NKTLDHQRLIMEVSKLCNPVFKPEPRAIKNRIEELISREYLARDDSSNSS YRYLA* back to topmRNA from alignment at NODE_61_length_58397_cov_4.831458:27978..30395- Legend: polypeptideCDSexonstart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud8721.t1 ID=Gcaud8721.t1|Name=Gcaud8721.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2418bp|location=Sequence derived from alignment at NODE_61_length_58397_cov_4.831458:27978..30395- (Gracilaria caudata M_176_S67 male) ATGGAGGAGCCAGGGATCGACATCGACGCTGGTTGGGCGATCATTGAGTC
GCGTGGTTTCGAGCCTCTCGCCGCAGTTCTTGACGCAGATGGTGATTACA
GACGACGTCATGGCACAGATGGGCCAAAGGAGTGGAATCACATCTATACC
ACTGTTTACAAAATGTGCATTCAGAAGACGCCGCGCTCCTACGCCAAAGA
CCTCTATCAAAGAGTTCAAGGCACATTGAAAGCGTATCTTCGATCATCAT
GTCTCCCCGCCATTCAACGTACTATAGGCGAGGAGTCGATGTTGCGAGAG
CTTCGCCGAAGATGGTCCAATCACAAGTTGATGGTGAAGTGGGTCACAAG
AACATTCTCATATATAGATAGGTACTATGTTAAGCGCAATGAAGAGCCAT
CTCTTGAGCACGCGGGATACATGTGCTTCAGAATAGAGGTGTTTGACAAT
ATTGTGGCTTCTGTGAGGAAGGCTGCTCTGAATATTGTGCAACGTGAGCG
AGATGGTGATAATGTTGATCGGTCTCTTCTACGCGGGGTCTTGGATATCT
TTGTGGAGATGGGCATGGGGAAGCTTGATGTGTACACTTTCGAGTGGGAG
GCTCCGTTTTTGGAAGAAACTGCTGACTTTTATAGAAGAACTTCAGCAAA
ATGGGCGGAGGAAGACTCGTTTCCTGATTTCATGCGAAAAGCCGACTCTA
ATATCATTGAAGAACTGGAGCGTGCAACACAATATTTAAATGGACAAACC
CAGGAACGTCTCCTAAGAGTATACGAGGAGGAGGTTTTAATAGTTCATCA
AAAGAAAATGCTGTCCAAAGACAATTCGGGTCTAGTTGCTCTGCTAGAGA
ACAACAAGAAGGACGATCTCATGCGGCTCTATCGCCTGTACTCTCGCGTT
CCTAATGGATTGGTTCCAGTTGGACAGATCTTGAAGAACCACATACAGAA
GGAAGGAATGGAACTAGTACGAGAACAAAGGAGTTTCATTGAGAATTCAA
AAACTGAGTCAACCCAGAAGGGCATGAGAGACGAAGCGCAAACCCCTACG
ACACCAAGCCGACATGGTCCGAGTAGCTCAGCAGACAAACCAGAGTACAT
CCAAAGACTCATTGCTTTGCATGACAGGTATACGGAGTTGGTCACAAATT
GTTTCTCGAAACATGCGGTGTTTACCAAAGCAATGAAAGAAGCGTTTGAG
AGGTTTGTAAACGAACAAGTTGGTGACTCTTCAACTGCACAATTGTTTGC
GAATTACTGCGACTCACTTCTGAACTCTGGAGGACGAGGTGCAAAAATGG
CCGAGGCGGATGTTGAAACCCAACTGGAAAAGCTCGTCAAGTTGTTCACA
TACCTCACGGAGAAGGATGTCTTCCAAGAATTCTGTCGGAAACAGTTGGC
AAAGCGCCTGCTGTTGGATCGCTCTCATTCTGATGATGCTGAGCGGCACC
TCATCAGTAAGTTGAAACAGAGTTGTGGAGCACATTTCACCTCAAAACTG
GAGGGGATGATAACCGACATCAATGTTAGCAGGGATACCCAAACTCAATT
TCGAGAATGGAACATTGGCCTCAACCGCGAGTCTTCTGGAACTGCAGGCC
GCTCTTTGTCTGGCACATCATCGTCAGCGGTAGTTATTGGTTCCGTTGAG
TTCTCGGTCAGAGTTTTGACCACTGGGCACTGGCCTACATATTCTGAGGA
TATAGTTGTTCTTCCTGCTCAGCTCGAATTATGCGAACGACGTTTTAAGG
AATTCTACGATAAGAGAACGTCACAACGAGTACTCAGATGGGTACATTCT
CTTGGAAAGGGATCATTAGAAACGAGCTTGTTCACTGGGAAACGTGCTTA
CCAACGAATCGAGCTTCATGTTTCGACTCATCAGCTTTGCATTCTTGTCC
TGTTCAATTTTACCGATCACGTCACCTACGCGCAAATTCTTGAGACGTTG
CATGACAAATCGCGGAAAGCAAACTCGAACGCACGTGATAGCGAAGATCT
ACTGAAGGCCTCTCTCGTTTCGTTAATGTCTCGCAAGACCCCTCTGCTCC
TTAAGGAACCCAAGAGCCGCGAGTTTAGTCGTACGGATATGTTTACTTTG
AACACCCAGTTTGTGTCCCCGAAGAGAAGGCTTACCGTGCCGATGCCGAT
GGCCAGAATCAACGAACAGGAAAAAGAAGCGGCGCACGATACCGTTGTTG
AAGACAGGCGCCATGCTATTGAGGCTGCTATCGTGAGGGTTATGAAGCAG
AATAAGACCTTGGACCATCAACGACTAATAATGGAAGTAAGCAAGCTGTG
CAATCCTGTTTTCAAGCCCGAGCCACGTGCCATTAAGAACAGGATTGAAG
AGCTGATTAGTCGAGAATACCTGGCTCGAGATGATTCAAGCAATTCTAGT
TATAGGTATCTTGCTTAG back to topCoding sequence (CDS) from alignment at NODE_61_length_58397_cov_4.831458:27978..30395- >Gcaud8721.t1 ID=Gcaud8721.t1|Name=Gcaud8721.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2418bp|location=Sequence derived from alignment at NODE_61_length_58397_cov_4.831458:27978..30395- (Gracilaria caudata M_176_S67 male) ATGGAGGAGCCAGGGATCGACATCGACGCTGGTTGGGCGATCATTGAGTC GCGTGGTTTCGAGCCTCTCGCCGCAGTTCTTGACGCAGATGGTGATTACA GACGACGTCATGGCACAGATGGGCCAAAGGAGTGGAATCACATCTATACC ACTGTTTACAAAATGTGCATTCAGAAGACGCCGCGCTCCTACGCCAAAGA CCTCTATCAAAGAGTTCAAGGCACATTGAAAGCGTATCTTCGATCATCAT GTCTCCCCGCCATTCAACGTACTATAGGCGAGGAGTCGATGTTGCGAGAG CTTCGCCGAAGATGGTCCAATCACAAGTTGATGGTGAAGTGGGTCACAAG AACATTCTCATATATAGATAGGTACTATGTTAAGCGCAATGAAGAGCCAT CTCTTGAGCACGCGGGATACATGTGCTTCAGAATAGAGGTGTTTGACAAT ATTGTGGCTTCTGTGAGGAAGGCTGCTCTGAATATTGTGCAACGTGAGCG AGATGGTGATAATGTTGATCGGTCTCTTCTACGCGGGGTCTTGGATATCT TTGTGGAGATGGGCATGGGGAAGCTTGATGTGTACACTTTCGAGTGGGAG GCTCCGTTTTTGGAAGAAACTGCTGACTTTTATAGAAGAACTTCAGCAAA ATGGGCGGAGGAAGACTCGTTTCCTGATTTCATGCGAAAAGCCGACTCTA ATATCATTGAAGAACTGGAGCGTGCAACACAATATTTAAATGGACAAACC CAGGAACGTCTCCTAAGAGTATACGAGGAGGAGGTTTTAATAGTTCATCA AAAGAAAATGCTGTCCAAAGACAATTCGGGTCTAGTTGCTCTGCTAGAGA ACAACAAGAAGGACGATCTCATGCGGCTCTATCGCCTGTACTCTCGCGTT CCTAATGGATTGGTTCCAGTTGGACAGATCTTGAAGAACCACATACAGAA GGAAGGAATGGAACTAGTACGAGAACAAAGGAGTTTCATTGAGAATTCAA AAACTGAGTCAACCCAGAAGGGCATGAGAGACGAAGCGCAAACCCCTACG ACACCAAGCCGACATGGTCCGAGTAGCTCAGCAGACAAACCAGAGTACAT CCAAAGACTCATTGCTTTGCATGACAGGTATACGGAGTTGGTCACAAATT GTTTCTCGAAACATGCGGTGTTTACCAAAGCAATGAAAGAAGCGTTTGAG AGGTTTGTAAACGAACAAGTTGGTGACTCTTCAACTGCACAATTGTTTGC GAATTACTGCGACTCACTTCTGAACTCTGGAGGACGAGGTGCAAAAATGG CCGAGGCGGATGTTGAAACCCAACTGGAAAAGCTCGTCAAGTTGTTCACA TACCTCACGGAGAAGGATGTCTTCCAAGAATTCTGTCGGAAACAGTTGGC AAAGCGCCTGCTGTTGGATCGCTCTCATTCTGATGATGCTGAGCGGCACC TCATCAGTAAGTTGAAACAGAGTTGTGGAGCACATTTCACCTCAAAACTG GAGGGGATGATAACCGACATCAATGTTAGCAGGGATACCCAAACTCAATT TCGAGAATGGAACATTGGCCTCAACCGCGAGTCTTCTGGAACTGCAGGCC GCTCTTTGTCTGGCACATCATCGTCAGCGGTAGTTATTGGTTCCGTTGAG TTCTCGGTCAGAGTTTTGACCACTGGGCACTGGCCTACATATTCTGAGGA TATAGTTGTTCTTCCTGCTCAGCTCGAATTATGCGAACGACGTTTTAAGG AATTCTACGATAAGAGAACGTCACAACGAGTACTCAGATGGGTACATTCT CTTGGAAAGGGATCATTAGAAACGAGCTTGTTCACTGGGAAACGTGCTTA CCAACGAATCGAGCTTCATGTTTCGACTCATCAGCTTTGCATTCTTGTCC TGTTCAATTTTACCGATCACGTCACCTACGCGCAAATTCTTGAGACGTTG CATGACAAATCGCGGAAAGCAAACTCGAACGCACGTGATAGCGAAGATCT ACTGAAGGCCTCTCTCGTTTCGTTAATGTCTCGCAAGACCCCTCTGCTCC TTAAGGAACCCAAGAGCCGCGAGTTTAGTCGTACGGATATGTTTACTTTG AACACCCAGTTTGTGTCCCCGAAGAGAAGGCTTACCGTGCCGATGCCGAT GGCCAGAATCAACGAACAGGAAAAAGAAGCGGCGCACGATACCGTTGTTG AAGACAGGCGCCATGCTATTGAGGCTGCTATCGTGAGGGTTATGAAGCAG AATAAGACCTTGGACCATCAACGACTAATAATGGAAGTAAGCAAGCTGTG CAATCCTGTTTTCAAGCCCGAGCCACGTGCCATTAAGAACAGGATTGAAG AGCTGATTAGTCGAGAATACCTGGCTCGAGATGATTCAAGCAATTCTAGT TATAGGTATCTTGCTTAG back to top
|