Gcaud8034.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8034.t1
Unique NameGcaud8034.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length146
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_612_length_20883_cov_4.409052contigNODE_612_length_20883_cov_4.409052:404..948 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8034Gcaud8034Gracilaria caudata M_176_S67 malegeneNODE_612_length_20883_cov_4.409052 404..948 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8034.t1Gcaud8034.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_612_length_20883_cov_4.409052 404..948 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8034.t1.CDS1Gcaud8034.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_612_length_20883_cov_4.409052 404..820 -
Gcaud8034.t1.CDS2Gcaud8034.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_612_length_20883_cov_4.409052 928..948 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8034.t1.exon1Gcaud8034.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_612_length_20883_cov_4.409052 404..820 -
Gcaud8034.t1.exon2Gcaud8034.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_612_length_20883_cov_4.409052 928..948 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8034.t1.intron1Gcaud8034.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_612_length_20883_cov_4.409052 821..927 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8034.t1.start1Gcaud8034.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_612_length_20883_cov_4.409052 946..948 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8034.t1 ID=Gcaud8034.t1|Name=Gcaud8034.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=146bp
MKRVLRVHYEAAKALRALPTADCEIWTDGSVGKPQWLSHAKPLRAAVEWD
EGWYAGMIQQRDQFDQSSAPIRQFVTQRGHLPAIVIAYDDNVTLAYDIIQ
NGGAVVDKEGDVLKMKVLSVQEVGAGAYAIWWNREEQPDVGKAPAG
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spliced messenger RNA

>Gcaud8034.t1 ID=Gcaud8034.t1|Name=Gcaud8034.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=438bp|location=Sequence derived from alignment at NODE_612_length_20883_cov_4.409052:404..948- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGAGGGTGTTGAGGGTACACTACGAAGCTGCGAAAGCCTTACGGGC
TTTGCCGACTGCAGATTGCGAGATATGGACGGACGGATCGGTTGGCAAGC
CGCAGTGGCTTTCGCACGCTAAGCCTCTCAGAGCTGCTGTAGAGTGGGAT
GAAGGCTGGTACGCTGGCATGATACAACAACGAGATCAGTTCGATCAAAG
CAGCGCACCGATACGACAGTTTGTGACACAGCGTGGCCATTTGCCAGCCA
TCGTCATTGCTTATGATGATAATGTTACGCTTGCTTACGATATCATTCAG
AATGGGGGTGCCGTGGTAGACAAAGAGGGTGATGTACTGAAAATGAAAGT
TCTTTCTGTTCAGGAAGTTGGTGCTGGCGCATACGCCATATGGTGGAATC
GAGAAGAACAACCAGATGTCGGAAAGGCACCTGCAGGA
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protein sequence of Gcaud8034.t1

>Gcaud8034.t1 ID=Gcaud8034.t1|Name=Gcaud8034.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=146bp
MKRVLRVHYEAAKALRALPTADCEIWTDGSVGKPQWLSHAKPLRAAVEWD
EGWYAGMIQQRDQFDQSSAPIRQFVTQRGHLPAIVIAYDDNVTLAYDIIQ
NGGAVVDKEGDVLKMKVLSVQEVGAGAYAIWWNREEQPDVGKAPAG
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mRNA from alignment at NODE_612_length_20883_cov_4.409052:404..948-

Legend: polypeptideCDSexonstart_codonintron
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8034.t1 ID=Gcaud8034.t1|Name=Gcaud8034.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=545bp|location=Sequence derived from alignment at NODE_612_length_20883_cov_4.409052:404..948- (Gracilaria caudata M_176_S67 male)
ATGAAGAGGGTGTTGAGGGTAGTGAGTGTGAAGAAATCGATAGATCACAC
TAGTCTTCTCTCTCTCGCATGATGGCGTTGAAATGAGCGGATTAACCCAA
GGTCTTTGATGATCCTATTCACAAGCAGCACTACGAAGCTGCGAAAGCCT
TACGGGCTTTGCCGACTGCAGATTGCGAGATATGGACGGACGGATCGGTT
GGCAAGCCGCAGTGGCTTTCGCACGCTAAGCCTCTCAGAGCTGCTGTAGA
GTGGGATGAAGGCTGGTACGCTGGCATGATACAACAACGAGATCAGTTCG
ATCAAAGCAGCGCACCGATACGACAGTTTGTGACACAGCGTGGCCATTTG
CCAGCCATCGTCATTGCTTATGATGATAATGTTACGCTTGCTTACGATAT
CATTCAGAATGGGGGTGCCGTGGTAGACAAAGAGGGTGATGTACTGAAAA
TGAAAGTTCTTTCTGTTCAGGAAGTTGGTGCTGGCGCATACGCCATATGG
TGGAATCGAGAAGAACAACCAGATGTCGGAAAGGCACCTGCAGGA
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Coding sequence (CDS) from alignment at NODE_612_length_20883_cov_4.409052:404..948-

>Gcaud8034.t1 ID=Gcaud8034.t1|Name=Gcaud8034.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=438bp|location=Sequence derived from alignment at NODE_612_length_20883_cov_4.409052:404..948- (Gracilaria caudata M_176_S67 male)
ATGAAGAGGGTGTTGAGGGTACACTACGAAGCTGCGAAAGCCTTACGGGC
TTTGCCGACTGCAGATTGCGAGATATGGACGGACGGATCGGTTGGCAAGC
CGCAGTGGCTTTCGCACGCTAAGCCTCTCAGAGCTGCTGTAGAGTGGGAT
GAAGGCTGGTACGCTGGCATGATACAACAACGAGATCAGTTCGATCAAAG
CAGCGCACCGATACGACAGTTTGTGACACAGCGTGGCCATTTGCCAGCCA
TCGTCATTGCTTATGATGATAATGTTACGCTTGCTTACGATATCATTCAG
AATGGGGGTGCCGTGGTAGACAAAGAGGGTGATGTACTGAAAATGAAAGT
TCTTTCTGTTCAGGAAGTTGGTGCTGGCGCATACGCCATATGGTGGAATC
GAGAAGAACAACCAGATGTCGGAAAGGCACCTGCAGGA
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