Gcaud7322.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud7322.t1
Unique NameGcaud7322.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length334
Homology
BLAST of Gcaud7322.t1 vs. uniprot
Match: A0A2V3IZC5_9FLOR (Copine-3 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IZC5_9FLOR)

HSP 1 Score: 566 bits (1458), Expect = 3.270e-202
Identity = 281/333 (84.38%), Postives = 310/333 (93.09%), Query Frame = 0
Query:    1 MGLDASFSHDSLLDEQELSSIRLQYPKSSRLLLGTTANLQQPAFLKALETRYPLELSVECRQLQAPSRLLPFRQVRPFAVFLYSEGPNAPWELIGRTETVLYDEYPRFVTKLKVCCATERDRQKILRVEVFDRRNRSEHIEDQTFIGATQCTLEDIIAEPLLRKEMQMNESRVMRPGRVIVCADAIRASERSMRLVLKLDMASGTKRNHRVFYVLSRQLQSGDYTPVYRSEVLTREQRRFESMTRDLTAVTAGVDDKLLRLELYQFSNRGAHIRLGFMQTSIEKLKSTERHSRLLWWPNAVGDGDSVIEVGRIVLIESVVSSVLLQFRLRVTQ 333
            MGL+A+ SHDS LD+ EL+SIRLQYPKSSRL+LGTTANLQQPAFLKALETRYPLELS+ECR+L  P RLLPFRQ RPFAVFLYSE PNAPWELIGRTETVLYDEY RFVTKLKVCCATERDRQKILRVE+FDRR++SEHIEDQTF+GA QCTLEDIIAEPLLRKEM + ESRVM+PG++IV ADAIRA+E+  RL+L LDM S TKR+HRVFYVLSRQLQSGDYTPVYRSEVL+REQ+RF+ MTRDLTAVTAGVDDKLLRLELYQFSNRG+HIRLGFMQTSI+KL+S ERHSRLLWWPNA GDGD+VIEVGR+VLIE+VVS  +LQFRLRVTQ
Sbjct:    1 MGLEAAMSHDSFLDDDELTSIRLQYPKSSRLMLGTTANLQQPAFLKALETRYPLELSLECRELHVPLRLLPFRQARPFAVFLYSEAPNAPWELIGRTETVLYDEYIRFVTKLKVCCATERDRQKILRVELFDRRSKSEHIEDQTFVGAAQCTLEDIIAEPLLRKEMALGESRVMQPGKIIVSADAIRANEKCARLILNLDMGSSTKRHHRVFYVLSRQLQSGDYTPVYRSEVLSREQKRFQPMTRDLTAVTAGVDDKLLRLELYQFSNRGSHIRLGFMQTSIDKLRSCERHSRLLWWPNAAGDGDNVIEVGRVVLIETVVSEEVLQFRLRVTQ 333          
BLAST of Gcaud7322.t1 vs. uniprot
Match: A0A7S0ZGD5_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZGD5_9RHOD)

HSP 1 Score: 114 bits (286), Expect = 1.320e-25
Identity = 75/246 (30.49%), Postives = 129/246 (52.44%), Query Frame = 0
Query:   53 PLELSVECRQLQAPSRLLPFRQVRPFAV-FLYSEGPNAPWELIGRTETVLYDEYPRFVTKLKVCCATERDRQKILRVEVFDRRNRS-EHIEDQTFIGATQCTLEDIIAEPLLRKEMQMNE-SRVMRPGRVIVCADAIRASERSMRLVLKLDMASGTKRNHRVFYVLSRQLQSGDYTPVYRSEVLTREQR-RFESMTRDLTAVTAGVDDKLLRLELYQFSNRGAHIRLGFMQTSIEKLKSTERHSRL 294
            PLEL++E   L A + L  F++  PFAV +L    PNA WE  G TE +     P+FV   ++ C+++ +R++ LRVE ++R ++  + +  Q FIG+  C L +I++ P    ++++   S+    G   V  D +   +    + L +   + +    + ++V+SR L+ G++TPVY SE   +     +E +T     +TAG DD+  R+E Y  S  G H  +G   T  E LK  +  ++L
Sbjct:   74 PLELNLEGNNL-ANAGL--FKKKAPFAVVYLKGVAPNAEWERFGDTEAIQNVLNPKFVASFRMACSSDEEREQSLRVEFYNRAHKDKDDLSKQDFIGSATCKLGEILSAPGQTLQLELKHPSKSNFRGNATVFIDTLLTRDPPFEIALCVKSEALSTEKKKSYFVISRALRKGNWTPVYMSETAKQGASISWEPITLAQERLTAGADDRAFRIEFYTKSMLGQHEYIGSFSTKYESLKGMKAGNKL 316          
BLAST of Gcaud7322.t1 vs. uniprot
Match: A0A2V3IHX9_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IHX9_9FLOR)

HSP 1 Score: 107 bits (268), Expect = 7.240e-23
Identity = 75/265 (28.30%), Postives = 131/265 (49.43%), Query Frame = 0
Query:   72 FRQVRPFAVFLYSEGP-NAPWELIGRTETVLYDEYPRFVTKLKVCCATERDRQKILRVEVFDRRNRSEHIEDQTFIGATQCTLEDIIAEPLLRKEMQMNESRVMRPG--RVIVCADAIRASERSMRLVLKLDMASGTKRNHRVFYVLSRQLQSGDYTPVYRSEVLTREQRR-FESMTRDLTAVTAGVDDKLLRLELYQFSNRGAHIRLGFMQTSIEKLKSTERHSRLLWWPNAVGDGDSVIEVGRIVLIESVVSSVLLQFRLRVT 332
            F     FAV L+SEG     WE+ G++E V    + + V K ++  ATE DR + + +  F+    S  +     +G    +  ++I    L  + ++   R    G  +V++  D I+   +   + ++  + S   R +R+F+VLSR L  G ++P+Y+SEV TR+    F ++  +      G + K  RLEL+++   G    LGF+QTS+EKLK+    + L WWP      D  I   ++ L+ ++ S    +F+  +T
Sbjct:  124 FSPAECFAV-LFSEGAVPGTWEVTGKSEAVRCSPHIKLVKKFRLRAATELDRSEKIVIAFFNSSTPSHLLSPSRALGYEVFSASELIEAKRLTLKRRLRNDRWNFWGNAQVVLSLDVIKHVSKKEMITIEFGLTSDAPRRNRMFFVLSRGLPQGTWSPIYKSEVRTRDDMASFNAVCLECLDFHGGDESKNFRLELHRWYKNGRTRPLGFIQTSLEKLKTMHASTYLYWWP-----ADDGITSAKVTLVRALASPSECRFQFSLT 382          
BLAST of Gcaud7322.t1 vs. uniprot
Match: A0A1D2NCV0_ORCCI (Copine-5 n=1 Tax=Orchesella cincta TaxID=48709 RepID=A0A1D2NCV0_ORCCI)

HSP 1 Score: 82.4 bits (202), Expect = 1.210e-13
Identity = 63/219 (28.77%), Postives = 104/219 (47.49%), Query Frame = 0
Query:   88 NAPWELIGRTETVLYDEYPRFVTKLKVCCATERDRQKILRVEVFDRRNRSEHIEDQTFIGATQCTLEDIIAE-------PLLRKEMQMN----ESRVMRPGRVIVCADAIRASERSMRLVLKLDMASGTKR---NHRVFYVLSRQLQSGDYTPVYRSEVLTREQRRFESMTRDLTAVTAGVDDKLLRLELYQFSNRGAHIRLGFMQTSIEKLKSTERHS 292
            N+ W  + RTE +     P F+TK+ +    E +  +ILR EV+D  N S  ++   FIG  +CTL  I+A        PL +K+ + N    +      GR+I+ A+ +   +  + L LK      T+       +FYVLS+  + G Y  VYRSE    +   +  +T  + ++  G  D+ L+   +Q    G H  LGF+ TS+ +++     S
Sbjct:   40 NSHWVELLRTEVIWDTLNPDFITKVTLDYRFEEE--QILRFEVYDIDNPSATLDLHDFIGFAECTLGQIVAAGYAGLTLPLTQKKSRFNPKVPKQVKQSKGRIILTAEELVQFKEEVTLRLKGHGMGSTRCCIFPPAIFYVLSKVNEDGSYIVVYRSETAPGDNPSWLPVTISIRSLCNGDKDRGLQFHFFQEGFNGYHTSLGFVLTSVNRMRGAPEGS 256          
BLAST of Gcaud7322.t1 vs. uniprot
Match: A0A7T8KKF0_CALRO (Copine VIII n=1 Tax=Caligus rogercresseyi TaxID=217165 RepID=A0A7T8KKF0_CALRO)

HSP 1 Score: 64.7 bits (156), Expect = 6.760e-8
Identity = 54/243 (22.22%), Postives = 120/243 (49.38%), Query Frame = 0
Query:   54 LELSVECRQLQAPSRLLPFRQVRPFAVFLYSEGPNAPWELIGRTETVLYDEYPRFVTKLKVCCATERDRQKILRVEVFDRRNRSEHIEDQTFIGATQCTLEDIIAEPLLRKEMQMNESRVMRPGRVIVCADAIRASERSMRLVLKLDMASGTKRNHR-------VFYVLSRQLQSGDYTPVYRSEVLTREQR-RFESMTRDLTAVTAGVDDKLLRLELYQFSNRGAHIRLGFMQTSIEKLKST 288
            +EL+++C+++     +    +  P  +     G N  +E +GRTE +  +  P F+ K+ +    E +RQ+ LR E++D     + +EDQ  +G    +L  I+    +  +++  +  +     +IV  +A  A     +L LK      TK +++        F+++ + + + D+  VY SE +  +    ++  +  L+ +  G  ++LL++++Y +S+ G H  +G  +TS+ ++ +T
Sbjct:   13 VELAIKCKEIMNKDMM---SKSDPICLVKQKTGVNK-FEELGRTEQLKDNLSPEFMKKIVIPYNFE-ERQE-LRFELWDVDKPDKKVEDQKLLGYVDVSLGKIVNARGIEAKIEKGKGSM-----IIVAKEASSAQSSEGKLHLKFG---ATKLDNKDTFGKSDPFFIIHKSISATDFMKVYESEWIKNDLNPTWKPFSISLSDLCDGEFNRLLKIDVYDYSSNGKHDLIGSFETSVGQMVNT 241          
BLAST of Gcaud7322.t1 vs. uniprot
Match: UPI0005151B8F (copine-1-like n=1 Tax=Phalacrocorax carbo TaxID=9209 RepID=UPI0005151B8F)

HSP 1 Score: 63.2 bits (152), Expect = 7.070e-8
Identity = 57/239 (23.85%), Postives = 114/239 (47.70%), Query Frame = 0
Query:   54 LELSVECRQLQAPSRLLPFRQVRPFAVFLYSEGPNAPWELIGRTETVLYDEYPRFVTKLKVCCATERDRQKILRVEVFDRRNRSEHIEDQTFIGATQCTLEDIIAEPLLRKEMQMNESRVMRPGRVIVCADAIRASERSMRLV-LKLDMASGTKRNHR----VFYVLSRQLQSGDYTPVYRSEVLTREQRR-FESMTRDLTAVTAGVDDKLLRLELYQFSNRGAHIRLGFMQTSIEKLK 286
            +ELSV CR L    R L  +   P  V L   G    W  + RTE +   + P F  KL V    E+ ++  L+  V+D  N+S  + D  ++G T+CTL  +++  +  + +++ + +    G + + A+ I+ +    R+V ++++  +  K++       F    +Q  +G +  VYRSEV+       +   +  L     G  +K ++++     + G+H  +G  +T++ +L+
Sbjct:    8 VELSVSCRGLL--DRDLGSKS-DPLCVLLQDAG-GGRWAELDRTERIKNCQNPEFCKKLVVDYYFEKVQK--LKFGVYDIDNKSFDLNDDDYLGGTECTLGQVVSSSVFTRPLELKQGKPAGKGTITISAEEIKDT----RVVYMEIEAQNLDKKDFLGKSDPFLEFYKQSGAGMWQLVYRSEVIKNNLNPCWRKFSVPLQTFCGGDFNKPVKVQCADHDSDGSHDLIGTFETNLTQLQ 236          
BLAST of Gcaud7322.t1 vs. uniprot
Match: A0A1U7SM23_ALLSI (copine-1 n=8 Tax=Crocodylia TaxID=1294634 RepID=A0A1U7SM23_ALLSI)

HSP 1 Score: 64.7 bits (156), Expect = 7.420e-8
Identity = 61/242 (25.21%), Postives = 114/242 (47.11%), Query Frame = 0
Query:   54 LELSVECRQLQAPSRLLPFRQVRPFAVFLYSEGPNAPWELIGRTETVLYDEYPRFVTKLKVCCATERDRQKILRVEVFDRRNRSEHIEDQTFIGATQCTLEDIIAEPLLRKEMQMNESRVMRPGRVIVCADAIRASERSMRLV-LKLDMASGTKRNHR----VFYVLSRQLQSGDYTPVYRSEVLTREQ----RRFESMTRDLTAVTAGVDDKLLRLELYQFSNRGAHIRLGFMQTSIEKLK 286
            +ELS+ C  L          +  P  V L + G +  W  + RTE +   + P F  KL +    E+  QKI +  V+D  N+S  + D  ++G T+C+L  I++   L + +++ + +    G +++ A+ I+ +    R+V L+++  S  K++       F    +Q  SG +  VYRSEV+        RRF      L     G   K +++    + + G+H  +G  +T++ +L+
Sbjct:    8 IELSISCENLLDKD---VGSKSDPLCVLLQNIGDDQ-WAELDRTERIKNCQKPEFSKKLLIDYYFEKV-QKI-KFGVYDIDNKSIDLNDDDYLGGTECSLGQIVSSKKLTRPLELKKGKPAGKGTIMISAEEIKDT----RVVNLEIEARSLDKKDFLGKSDPFLEFYKQSDSGPWQLVYRSEVIKNNLNPCWRRFSV---PLHTFCGGDFSKPIKVHCTDYDSDGSHDLIGSFETNLSQLQ 236          
BLAST of Gcaud7322.t1 vs. uniprot
Match: A0A1X6NPL0_PORUM (C2 domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NPL0_PORUM)

HSP 1 Score: 62.8 bits (151), Expect = 2.860e-7
Identity = 47/129 (36.43%), Postives = 62/129 (48.06%), Query Frame = 0
Query:  177 GRVIVCADAIRASE--RSMRLVLKLDMASGTKRNHRVFYVLSRQLQSGDYTPVYRSEVLTR-EQRRFESMTRDLTAVTAGVDDKLLRLELYQFSNRGAHIRLGFMQTSIEKLKSTERHSRLLWWPNAVG 302
            G + + AD IR      S+ +   +D      RN   F VL R L+ G +  VYRSE   R E   F         +  G   +LLRLE+Y++   G    LGF+Q S+EKL+S      L WWP AVG
Sbjct:  311 GALTIDADLIRHVHPPSSVTIGFGIDGGEALARNRSQF-VLCRALRRGRWAAVYRSEPRVRAEAGAFIPAVLPTDVLCGGEAGRLLRLEVYRYYLNGETALLGFVQVSMEKLRSMREGGELYWWP-AVG 437          
BLAST of Gcaud7322.t1 vs. uniprot
Match: UPI001C4D7C39 (protein BONZAI 3-like n=2 Tax=Zingiber officinale TaxID=94328 RepID=UPI001C4D7C39)

HSP 1 Score: 58.9 bits (141), Expect = 5.880e-6
Identity = 54/250 (21.60%), Postives = 114/250 (45.60%), Query Frame = 0
Query:   54 LELSVECRQLQAPSRLLPFRQVRPFAVFLYSEGPNAPWELIGRTETVLYDEYPRFVTKLKVCCATERDRQKILRVEVFDRRN-----RSEHIEDQTFIGATQCTLEDIIAEP---LLRKEMQMNESRVMRPGRVIVCADAIRASERSMRLVLKLDMASGTK--RNHRVFYVLSRQLQSGDYTPVYRSEVLTREQRR-FESMTRDLTAVTAGVDDKLLRLELYQFSNRGAHIRLGFMQTSIEKLKSTERHS 292
            LELS+   +LQ    +    +  P AV LY +  +   E +GRTE ++ +  P ++TK  +    E  +  ++RV   D +      ++ ++ +Q ++G     + +++ +P   L     Q N       G + + A+   AS  +  +  +               F ++S+ ++SG   P+++SEV+  +    ++ +T  +    +   +  L +E + F++ G H +LG +QTS+  L+   R +
Sbjct:   51 LELSLSASRLQNHDIM---SKSDPLAV-LYLKRRDGMLEELGRTEVIMNNLSPSWITKFTINYQFEIVQHLVIRVYDVDTKYFNIPVKTINLNEQDYLGEASFAMSELVTKPNRSLTLNLQQKNGHPNAHSGTITIHAEEPIASRTAFEITFRCSKLENKDVFSKSDPFLIISKFVESGISIPIWKSEVINNDLNPVWKPVTLSMQQFLS--KENPLIIECFDFNDSGKHDQLGLLQTSVADLEKLAREN 294          
The following BLAST results are available for this feature:
BLAST of Gcaud7322.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A2V3IZC5_9FLOR3.270e-20284.38Copine-3 n=1 Tax=Gracilariopsis chorda TaxID=44838... [more]
A0A7S0ZGD5_9RHOD1.320e-2530.49Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A2V3IHX9_9FLOR7.240e-2328.30Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A1D2NCV0_ORCCI1.210e-1328.77Copine-5 n=1 Tax=Orchesella cincta TaxID=48709 Rep... [more]
A0A7T8KKF0_CALRO6.760e-822.22Copine VIII n=1 Tax=Caligus rogercresseyi TaxID=21... [more]
UPI0005151B8F7.070e-823.85copine-1-like n=1 Tax=Phalacrocorax carbo TaxID=92... [more]
A0A1U7SM23_ALLSI7.420e-825.21copine-1 n=8 Tax=Crocodylia TaxID=1294634 RepID=A0... [more]
A0A1X6NPL0_PORUM2.860e-736.43C2 domain-containing protein n=1 Tax=Porphyra umbi... [more]
UPI001C4D7C395.880e-621.60protein BONZAI 3-like n=2 Tax=Zingiber officinale ... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000008C2 domainPFAMPF00168C2coord: 59..159
e-value: 0.0015
score: 18.8
IPR035892C2 domain superfamilyGENE3D2.60.40.150C2 domaincoord: 56..183
e-value: 1.8E-5
score: 26.7
IPR035892C2 domain superfamilySUPERFAMILY49562C2 domain (Calcium/lipid-binding domain, CaLB)coord: 56..165
IPR045052CopinePANTHERPTHR10857COPINEcoord: 53..289

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_605_length_21023_cov_4.463214contigNODE_605_length_21023_cov_4.463214:7151..8152 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7322.t1Gcaud7322.t1Gracilaria caudata M_176_S67 malemRNANODE_605_length_21023_cov_4.463214 7151..8152 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud7322.t1 ID=Gcaud7322.t1|Name=Gcaud7322.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=334bp
MGLDASFSHDSLLDEQELSSIRLQYPKSSRLLLGTTANLQQPAFLKALET
RYPLELSVECRQLQAPSRLLPFRQVRPFAVFLYSEGPNAPWELIGRTETV
LYDEYPRFVTKLKVCCATERDRQKILRVEVFDRRNRSEHIEDQTFIGATQ
CTLEDIIAEPLLRKEMQMNESRVMRPGRVIVCADAIRASERSMRLVLKLD
MASGTKRNHRVFYVLSRQLQSGDYTPVYRSEVLTREQRRFESMTRDLTAV
TAGVDDKLLRLELYQFSNRGAHIRLGFMQTSIEKLKSTERHSRLLWWPNA
VGDGDSVIEVGRIVLIESVVSSVLLQFRLRVTQ*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000008C2_dom
IPR035892C2_domain_sf
IPR045052Copine