Gcaud1986.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1986.t1
Unique Name	Gcaud1986.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	211

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_5_length_105932_cov_4.447794	contig	NODE_5_length_105932_cov_4.447794:22697..23329 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	109760.SPPG_00368T0
Preferred name	TSR3
PFAMs	RLI,Ribo_biogen_C
Max annot lvl	4751\|Fungi
KEGG ko	ko:K09140
GOs	GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016740,GO:0022613,GO:0030490,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0046872,GO:0071704,GO:0071840,GO:0090304,GO:1901360
Evalue	1.38e-51
EggNOG OGs	COG2042@1\|root,KOG3154@2759\|Eukaryota,38FB5@33154\|Opisthokonta,3NUW8@4751\|Fungi
Description	Ribosome biogenesis protein required for processing 35S pre-rRNA at site D
COG category	S
BRITE	ko00000,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1986	Gcaud1986	Gracilaria caudata M_176_S67 male	gene	NODE_5_length_105932_cov_4.447794 22697..23329 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1986.t1.start1	Gcaud1986.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_5_length_105932_cov_4.447794 22697..22699 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1986.t1.CDS1	Gcaud1986.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_5_length_105932_cov_4.447794 22697..23329 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1986.t1.exon1	Gcaud1986.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_5_length_105932_cov_4.447794 22697..23329 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1986.t1.stop1	Gcaud1986.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_5_length_105932_cov_4.447794 23327..23329 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1986.t1	Gcaud1986.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_5_length_105932_cov_4.447794 22697..23329 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_5_length_105932_cov_4.447794:22697..23329+
coding sequence from alignment at NODE_5_length_105932_cov_4.447794:22697..23329+

mRNA sequence

>Gcaud1986.t1 ID=Gcaud1986.t1|Name=Gcaud1986.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=211bp
MLRTLRISQRHPGVVLTPVGTRAISKTDASLVESCGLGVVDCSWARVDEV
SFDRLKSGADRLLPFLIAANPVNYGKPLRLTCAEALAGGLYIMGFTNSAH
QVLSKFVWGDSFWQLNGDLLEQYRNCNKSEEVVAVQNAYIAACEKEVEER
KQSDDPFWGLGNSDDEESRSEDYGADVESEVDKEVCNANVEIMLDAMRVT
TDEGEVHSRN*

spliced messenger RNA

>Gcaud1986.t1 ID=Gcaud1986.t1|Name=Gcaud1986.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=633bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:22697..23329+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTACGCACTCTAAGAATCTCTCAAAGACACCCTGGAGTCGTGTTAAC
ACCAGTAGGGACTCGTGCAATCTCAAAAACAGATGCTTCTCTCGTAGAAA
GTTGTGGACTGGGAGTTGTTGATTGCTCATGGGCGAGGGTTGACGAAGTA
TCGTTTGACAGATTAAAGAGTGGTGCTGACCGACTTCTCCCATTCCTAAT
TGCCGCGAACCCTGTGAATTATGGCAAACCTCTCCGGCTGACATGCGCCG
AAGCCTTGGCAGGGGGTTTGTACATCATGGGCTTCACGAACTCAGCCCAT
CAAGTTCTGAGCAAATTCGTTTGGGGGGATTCGTTCTGGCAGTTGAACGG
GGATTTATTGGAACAGTACCGCAACTGCAACAAAAGTGAAGAGGTTGTAG
CGGTTCAGAACGCATACATTGCGGCTTGTGAAAAAGAAGTGGAAGAAAGA
AAGCAAAGTGATGATCCTTTTTGGGGGTTAGGAAATAGTGATGATGAAGA
AAGTAGAAGTGAGGATTATGGCGCCGATGTTGAAAGCGAAGTAGACAAAG
AAGTGTGCAATGCTAATGTGGAGATAATGCTGGATGCCATGCGCGTGACT
ACTGACGAAGGGGAGGTTCATTCTCGTAATTAG

protein sequence of Gcaud1986.t1

>Gcaud1986.t1 ID=Gcaud1986.t1|Name=Gcaud1986.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=211bp
MLRTLRISQRHPGVVLTPVGTRAISKTDASLVESCGLGVVDCSWARVDEV
SFDRLKSGADRLLPFLIAANPVNYGKPLRLTCAEALAGGLYIMGFTNSAH
QVLSKFVWGDSFWQLNGDLLEQYRNCNKSEEVVAVQNAYIAACEKEVEER
KQSDDPFWGLGNSDDEESRSEDYGADVESEVDKEVCNANVEIMLDAMRVT
TDEGEVHSRN*

mRNA from alignment at NODE_5_length_105932_cov_4.447794:22697..23329+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1986.t1 ID=Gcaud1986.t1|Name=Gcaud1986.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=633bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:22697..23329+ (Gracilaria caudata M_176_S67 male)
ATGCTACGCACTCTAAGAATCTCTCAAAGACACCCTGGAGTCGTGTTAAC
ACCAGTAGGGACTCGTGCAATCTCAAAAACAGATGCTTCTCTCGTAGAAA
GTTGTGGACTGGGAGTTGTTGATTGCTCATGGGCGAGGGTTGACGAAGTA
TCGTTTGACAGATTAAAGAGTGGTGCTGACCGACTTCTCCCATTCCTAAT
TGCCGCGAACCCTGTGAATTATGGCAAACCTCTCCGGCTGACATGCGCCG
AAGCCTTGGCAGGGGGTTTGTACATCATGGGCTTCACGAACTCAGCCCAT
CAAGTTCTGAGCAAATTCGTTTGGGGGGATTCGTTCTGGCAGTTGAACGG
GGATTTATTGGAACAGTACCGCAACTGCAACAAAAGTGAAGAGGTTGTAG
CGGTTCAGAACGCATACATTGCGGCTTGTGAAAAAGAAGTGGAAGAAAGA
AAGCAAAGTGATGATCCTTTTTGGGGGTTAGGAAATAGTGATGATGAAGA
AAGTAGAAGTGAGGATTATGGCGCCGATGTTGAAAGCGAAGTAGACAAAG
AAGTGTGCAATGCTAATGTGGAGATAATGCTGGATGCCATGCGCGTGACT
ACTGACGAAGGGGAGGTTCATTCTCGTAATTAG

Coding sequence (CDS) from alignment at NODE_5_length_105932_cov_4.447794:22697..23329+

>Gcaud1986.t1 ID=Gcaud1986.t1|Name=Gcaud1986.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=633bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:22697..23329+ (Gracilaria caudata M_176_S67 male)
ATGCTACGCACTCTAAGAATCTCTCAAAGACACCCTGGAGTCGTGTTAAC
ACCAGTAGGGACTCGTGCAATCTCAAAAACAGATGCTTCTCTCGTAGAAA
GTTGTGGACTGGGAGTTGTTGATTGCTCATGGGCGAGGGTTGACGAAGTA
TCGTTTGACAGATTAAAGAGTGGTGCTGACCGACTTCTCCCATTCCTAAT
TGCCGCGAACCCTGTGAATTATGGCAAACCTCTCCGGCTGACATGCGCCG
AAGCCTTGGCAGGGGGTTTGTACATCATGGGCTTCACGAACTCAGCCCAT
CAAGTTCTGAGCAAATTCGTTTGGGGGGATTCGTTCTGGCAGTTGAACGG
GGATTTATTGGAACAGTACCGCAACTGCAACAAAAGTGAAGAGGTTGTAG
CGGTTCAGAACGCATACATTGCGGCTTGTGAAAAAGAAGTGGAAGAAAGA
AAGCAAAGTGATGATCCTTTTTGGGGGTTAGGAAATAGTGATGATGAAGA
AAGTAGAAGTGAGGATTATGGCGCCGATGTTGAAAGCGAAGTAGACAAAG
AAGTGTGCAATGCTAATGTGGAGATAATGCTGGATGCCATGCGCGTGACT
ACTGACGAAGGGGAGGTTCATTCTCGTAATTAG