Gcaud1982.t2 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1982.t2
Unique NameGcaud1982.t2
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length219
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_5_length_105932_cov_4.447794contigNODE_5_length_105932_cov_4.447794:11819..12475 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1982Gcaud1982Gracilaria caudata M_176_S67 malegeneNODE_5_length_105932_cov_4.447794 11819..14263 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1982.t2.stop1Gcaud1982.t2.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_5_length_105932_cov_4.447794 11819..11821 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1982.t2.CDS1Gcaud1982.t2.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_5_length_105932_cov_4.447794 11819..12475 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1982.t2.exon1Gcaud1982.t2.exon1Gracilaria caudata M_176_S67 maleexonNODE_5_length_105932_cov_4.447794 11819..12475 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1982.t2.start1Gcaud1982.t2.start1Gracilaria caudata M_176_S67 malestart_codonNODE_5_length_105932_cov_4.447794 12473..12475 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1982.t2Gcaud1982.t2Gracilaria caudata M_176_S67 malepolypeptideNODE_5_length_105932_cov_4.447794 11819..12475 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1982.t2 ID=Gcaud1982.t2|Name=Gcaud1982.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=219bp
MRSTGTFVGRGPAPLRNYSESTITGDWMRAPLQPREEDEDGEEDEDEGRG
KGGGNFEPASGASLLDADEDPLELPKHSSPRSPGDRRRGIYRSRSKSSVR
QYAQGNGSTRDPRSFSWKSMFPKETEVDPSAGDKQPDRGEDMQNPSKGAV
FGKATGDEWDSYRSGEDPLVSAGEMDPLEENGGEGLGPEVSLEKGSEEQE
RLRAWRMSAEEASSSVRR*
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spliced messenger RNA

>Gcaud1982.t2 ID=Gcaud1982.t2|Name=Gcaud1982.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=657bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:11819..12475- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTTCTACTGGAACTTTTGTAGGGCGCGGGCCTGCTCCTTTGAGAAA
TTATTCAGAATCTACTATTACAGGTGATTGGATGCGTGCTCCACTGCAGC
CTCGAGAAGAGGATGAGGATGGGGAAGAGGATGAGGATGAGGGGAGAGGT
AAGGGAGGAGGTAACTTTGAACCTGCCAGCGGAGCAAGCTTGCTAGACGC
CGACGAAGACCCACTGGAACTACCAAAGCACAGCTCTCCGCGGTCCCCGG
GTGACCGAAGACGTGGTATCTACAGAAGCAGGAGTAAATCCTCAGTAAGG
CAGTATGCACAGGGAAACGGCTCGACTCGAGACCCAAGGTCATTCTCATG
GAAAAGTATGTTCCCGAAAGAGACTGAAGTCGATCCATCAGCAGGAGACA
AGCAACCTGACCGAGGTGAGGATATGCAGAACCCGTCAAAGGGGGCTGTT
TTCGGGAAGGCCACCGGCGACGAATGGGACTCGTACAGAAGTGGGGAGGA
TCCACTAGTTTCAGCAGGGGAAATGGACCCTCTTGAAGAGAACGGAGGGG
AAGGCCTGGGACCTGAAGTGAGTTTGGAGAAAGGTAGCGAGGAACAAGAG
CGGTTAAGGGCCTGGAGAATGTCTGCGGAAGAAGCGTCAAGCAGTGTTCG
TCGATGA
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protein sequence of Gcaud1982.t2

>Gcaud1982.t2 ID=Gcaud1982.t2|Name=Gcaud1982.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=219bp
MRSTGTFVGRGPAPLRNYSESTITGDWMRAPLQPREEDEDGEEDEDEGRG
KGGGNFEPASGASLLDADEDPLELPKHSSPRSPGDRRRGIYRSRSKSSVR
QYAQGNGSTRDPRSFSWKSMFPKETEVDPSAGDKQPDRGEDMQNPSKGAV
FGKATGDEWDSYRSGEDPLVSAGEMDPLEENGGEGLGPEVSLEKGSEEQE
RLRAWRMSAEEASSSVRR*
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mRNA from alignment at NODE_5_length_105932_cov_4.447794:11819..12475-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1982.t2 ID=Gcaud1982.t2|Name=Gcaud1982.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=657bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:11819..12475- (Gracilaria caudata M_176_S67 male)
ATGCGTTCTACTGGAACTTTTGTAGGGCGCGGGCCTGCTCCTTTGAGAAA
TTATTCAGAATCTACTATTACAGGTGATTGGATGCGTGCTCCACTGCAGC
CTCGAGAAGAGGATGAGGATGGGGAAGAGGATGAGGATGAGGGGAGAGGT
AAGGGAGGAGGTAACTTTGAACCTGCCAGCGGAGCAAGCTTGCTAGACGC
CGACGAAGACCCACTGGAACTACCAAAGCACAGCTCTCCGCGGTCCCCGG
GTGACCGAAGACGTGGTATCTACAGAAGCAGGAGTAAATCCTCAGTAAGG
CAGTATGCACAGGGAAACGGCTCGACTCGAGACCCAAGGTCATTCTCATG
GAAAAGTATGTTCCCGAAAGAGACTGAAGTCGATCCATCAGCAGGAGACA
AGCAACCTGACCGAGGTGAGGATATGCAGAACCCGTCAAAGGGGGCTGTT
TTCGGGAAGGCCACCGGCGACGAATGGGACTCGTACAGAAGTGGGGAGGA
TCCACTAGTTTCAGCAGGGGAAATGGACCCTCTTGAAGAGAACGGAGGGG
AAGGCCTGGGACCTGAAGTGAGTTTGGAGAAAGGTAGCGAGGAACAAGAG
CGGTTAAGGGCCTGGAGAATGTCTGCGGAAGAAGCGTCAAGCAGTGTTCG
TCGATGA
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Coding sequence (CDS) from alignment at NODE_5_length_105932_cov_4.447794:11819..12475-

>Gcaud1982.t2 ID=Gcaud1982.t2|Name=Gcaud1982.t2|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=657bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:11819..12475- (Gracilaria caudata M_176_S67 male)
ATGCGTTCTACTGGAACTTTTGTAGGGCGCGGGCCTGCTCCTTTGAGAAA
TTATTCAGAATCTACTATTACAGGTGATTGGATGCGTGCTCCACTGCAGC
CTCGAGAAGAGGATGAGGATGGGGAAGAGGATGAGGATGAGGGGAGAGGT
AAGGGAGGAGGTAACTTTGAACCTGCCAGCGGAGCAAGCTTGCTAGACGC
CGACGAAGACCCACTGGAACTACCAAAGCACAGCTCTCCGCGGTCCCCGG
GTGACCGAAGACGTGGTATCTACAGAAGCAGGAGTAAATCCTCAGTAAGG
CAGTATGCACAGGGAAACGGCTCGACTCGAGACCCAAGGTCATTCTCATG
GAAAAGTATGTTCCCGAAAGAGACTGAAGTCGATCCATCAGCAGGAGACA
AGCAACCTGACCGAGGTGAGGATATGCAGAACCCGTCAAAGGGGGCTGTT
TTCGGGAAGGCCACCGGCGACGAATGGGACTCGTACAGAAGTGGGGAGGA
TCCACTAGTTTCAGCAGGGGAAATGGACCCTCTTGAAGAGAACGGAGGGG
AAGGCCTGGGACCTGAAGTGAGTTTGGAGAAAGGTAGCGAGGAACAAGAG
CGGTTAAGGGCCTGGAGAATGTCTGCGGAAGAAGCGTCAAGCAGTGTTCG
TCGATGA
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